Cysltr2 (cysteinyl leukotriene receptor 2) - Rat Genome Database

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Gene: Cysltr2 (cysteinyl leukotriene receptor 2) Mus musculus
Analyze
Symbol: Cysltr2
Name: cysteinyl leukotriene receptor 2
RGD ID: 732045
MGI Page MGI
Description: Enables cysteinyl leukotriene receptor activity. Predicted to be involved in several processes, including negative regulation of glial cell proliferation; neuropeptide signaling pathway; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Located in membrane. Human ortholog(s) of this gene implicated in aspirin-induced respiratory disease and asthma. Orthologous to human CYSLTR2 (cysteinyl leukotriene receptor 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2300001H05Rik; Cltr2; CysL; Cyslt2; CYSLT2R
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391473,263,043 - 73,286,554 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1473,263,043 - 73,286,554 (-)EnsemblGRCm39 Ensembl
GRCm381473,025,672 - 73,049,114 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1473,025,603 - 73,049,114 (-)EnsemblGRCm38mm10GRCm38
MGSCv371473,428,935 - 73,448,921 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361471,764,210 - 71,784,144 (-)NCBIMGSCv36mm8
Celera1470,545,510 - 70,565,476 (-)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1438.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IDA,ISS)
plasma membrane  (IBA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Targeted gene disruption reveals the role of the cysteinyl leukotriene 2 receptor in increased vascular permeability and in bleomycin-induced pulmonary fibrosis in mice. Beller TC, etal., J Biol Chem. 2004 Oct 29;279(44):46129-34. Epub 2004 Aug 24.
2. Association between a polymorphism in cysteinyl leukotriene receptor 2 on chromosome 13q14 and atopic asthma. Fukai H, etal., Pharmacogenetics. 2004 Oct;14(10):683-90.
3. Cysteinyl leukotriene receptors are expressed by tonsillar T cells of children with obstructive sleep apnea. Kaditis AG, etal., Chest. 2008 Aug;134(2):324-31. Epub 2008 May 19.
4. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
5. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. MGD IEA MGD IEA
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. Association analysis of cysteinyl-leukotriene receptor 2 (CYSLTR2) polymorphisms with aspirin intolerance in asthmatics. Park JS, etal., Pharmacogenet Genomics. 2005 Jul;15(7):483-92.
10. Expression of eicosanoid receptors subtypes and eosinophilic inflammation: implication on chronic rhinosinusitis. Perez-Novo CA, etal., Respir Res. 2006 May 12;7:75.
11. A coding polymorphism in the CYSLT2 receptor with reduced affinity to LTD4 is associated with asthma. Pillai SG, etal., Pharmacogenetics. 2004 Sep;14(9):627-33.
12. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
13. Mouse MP Annotation Import Pipeline RGD automated import pipeline
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Involvement of leukotrienes in the pathogenesis of silica-induced pulmonary fibrosis in mice. Shimbori C, etal., Exp Lung Res. 2010 Jun;36(5):292-301.
16. Expression of cysteinyl leukotriene receptor in brain tissues of rats with Streptococcus pneumoniae meningitis. Yu S, etal., Int J Clin Exp Pathol. 2019 Dec 1;12(12):4242-4252. eCollection 2019.
17. Cysteinyl leukotriene receptor 2 is spatiotemporally involved in neuron injury, astrocytosis and microgliosis after focal cerebral ischemia in rats. Zhao CZ, etal., Neuroscience. 2011 Jun 12.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11591709   PMID:11854273   PMID:12477932   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16756959   PMID:16920908   PMID:17693579  
PMID:18276782   PMID:18779380   PMID:18931305   PMID:19822647   PMID:20219953   PMID:21267068   PMID:21641390   PMID:21873635   PMID:22131271   PMID:22416124   PMID:23002438   PMID:23132680  
PMID:23504326   PMID:23505108   PMID:24244016   PMID:24269024   PMID:24285579   PMID:24361619   PMID:27185938   PMID:28011865   PMID:28476948   PMID:28667163   PMID:29282304   PMID:29628047  
PMID:30559191   PMID:30664709   PMID:31135881   PMID:32160525   PMID:33753496   PMID:34932383   PMID:35875660   PMID:37437602  


Genomics

Comparative Map Data
Cysltr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391473,263,043 - 73,286,554 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1473,263,043 - 73,286,554 (-)EnsemblGRCm39 Ensembl
GRCm381473,025,672 - 73,049,114 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1473,025,603 - 73,049,114 (-)EnsemblGRCm38mm10GRCm38
MGSCv371473,428,935 - 73,448,921 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361471,764,210 - 71,784,144 (-)NCBIMGSCv36mm8
Celera1470,545,510 - 70,565,476 (-)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1438.54NCBI
CYSLTR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381348,653,929 - 48,711,226 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1348,653,711 - 48,711,226 (+)EnsemblGRCh38hg38GRCh38
GRCh371349,228,065 - 49,285,362 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361348,178,952 - 48,181,499 (+)NCBINCBI36Build 36hg18NCBI36
Build 341348,178,951 - 48,181,499NCBI
Celera1330,335,737 - 30,338,284 (+)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1330,074,309 - 30,076,858 (+)NCBIHuRef
CHM1_11349,248,517 - 49,251,064 (+)NCBICHM1_1
T2T-CHM13v2.01347,874,204 - 47,931,486 (+)NCBIT2T-CHM13v2.0
Cysltr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81554,599,043 - 54,638,314 (-)NCBIGRCr8
mRatBN7.21548,189,476 - 48,228,750 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1548,189,073 - 48,304,136 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1552,335,467 - 52,371,705 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01553,447,041 - 53,483,279 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01550,280,153 - 50,323,717 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01554,903,290 - 54,941,742 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1554,905,274 - 54,906,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01558,626,639 - 58,627,568 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41553,647,500 - 53,648,429 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11553,663,279 - 53,664,209 (-)NCBI
Celera1547,842,400 - 47,878,749 (-)NCBICelera
Cytogenetic Map15p11NCBI
Cysltr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554312,263,698 - 2,282,635 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554312,203,342 - 2,282,635 (+)NCBIChiLan1.0ChiLan1.0
CYSLTR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21450,096,264 - 50,153,487 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11348,747,376 - 48,804,604 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01329,796,598 - 29,853,676 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11348,497,679 - 48,556,159 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1348,551,757 - 48,552,797 (+)Ensemblpanpan1.1panPan2
CYSLTR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1222,914,960 - 2,962,517 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl222,917,514 - 2,918,551 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha222,942,924 - 2,990,494 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0222,903,750 - 2,951,364 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl222,906,323 - 2,907,360 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1222,813,420 - 2,861,018 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,859,844 - 2,924,179 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,881,301 - 2,928,917 (-)NCBIUU_Cfam_GSD_1.0
Cysltr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945158,401,599 - 158,442,112 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365651,917,970 - 1,919,027 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYSLTR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,987,174 - 19,011,015 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11118,988,665 - 19,011,015 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21119,465,520 - 19,487,725 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYSLTR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1326,578,248 - 26,624,364 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605717,279,511 - 17,460,410 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cysltr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247486,040,564 - 6,043,454 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cysltr2
1012 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:140
Count of miRNA genes:67
Interacting mature miRNAs:70
Transcripts:ENSMUST00000044664, ENSMUST00000169168
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
12880400Emlq2_memotional learning QTL 2 (mouse)147083763373337633Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000044664   ⟹   ENSMUSP00000040715
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1473,266,568 - 73,286,512 (-)Ensembl
GRCm38.p6 Ensembl1473,029,128 - 73,049,072 (-)Ensembl
RefSeq Acc Id: ENSMUST00000169168   ⟹   ENSMUSP00000125958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1473,266,569 - 73,286,554 (-)Ensembl
GRCm38.p6 Ensembl1473,029,129 - 73,049,114 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226727
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1473,263,225 - 73,286,554 (-)Ensembl
GRCm38.p6 Ensembl1473,025,785 - 73,049,114 (-)Ensembl
RefSeq Acc Id: ENSMUST00000228154
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1473,263,043 - 73,263,599 (-)Ensembl
GRCm38.p6 Ensembl1473,025,603 - 73,026,159 (-)Ensembl
RefSeq Acc Id: ENSMUST00000228821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1473,285,498 - 73,286,554 (-)Ensembl
GRCm38.p6 Ensembl1473,048,058 - 73,049,114 (-)Ensembl
RefSeq Acc Id: NM_001162412   ⟹   NP_001155884
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391473,263,043 - 73,286,554 (-)NCBI
GRCm381473,029,128 - 73,049,114 (-)NCBI
MGSCv371473,428,935 - 73,448,921 (-)RGD
Celera1470,545,510 - 70,565,476 (-)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_133720   ⟹   NP_598481
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391473,263,043 - 73,286,554 (-)NCBI
GRCm381473,029,128 - 73,049,114 (-)NCBI
MGSCv371473,428,935 - 73,448,921 (-)RGD
Celera1470,545,510 - 70,565,476 (-)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030248001   ⟹   XP_030103861
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391473,263,515 - 73,267,838 (-)NCBI
GRCm381473,025,980 - 73,030,398 (-)NCBI
Sequence:
RefSeq Acc Id: NP_598481   ⟸   NM_133720
- UniProtKB: A2RT90 (UniProtKB/Swiss-Prot),   Q920A1 (UniProtKB/Swiss-Prot),   Q8R528 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155884   ⟸   NM_001162412
- UniProtKB: A2RT90 (UniProtKB/Swiss-Prot),   Q920A1 (UniProtKB/Swiss-Prot),   Q8R528 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030103861   ⟸   XM_030248001
- Peptide Label: isoform X1
- UniProtKB: Q920A1 (UniProtKB/Swiss-Prot),   A2RT90 (UniProtKB/Swiss-Prot),   Q8R528 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000125958   ⟸   ENSMUST00000169168
RefSeq Acc Id: ENSMUSP00000040715   ⟸   ENSMUST00000044664
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q920A1-F1-model_v2 AlphaFold Q920A1 1-309 view protein structure

Promoters
RGD ID:8682956
Promoter ID:EPDNEW_M19509
Type:initiation region
Name:Cysltr2_1
Description:Mus musculus cysteinyl leukotriene receptor 2 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381473,049,114 - 73,049,174EPDNEW
RGD ID:6824797
Promoter ID:MM_KWN:17425
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver
Transcripts:ENSMUST00000044664,   NM_001162412
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361473,448,901 - 73,449,662 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917336 AgrOrtholog
Ensembl Genes ENSMUSG00000033470 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000044664 ENTREZGENE
  ENSMUST00000044664.12 UniProtKB/Swiss-Prot
  ENSMUST00000169168 ENTREZGENE
  ENSMUST00000169168.3 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CLT2_recept UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyst_leuk_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:70086 UniProtKB/Swiss-Prot
MGD MGI:1917336 ENTREZGENE
NCBI Gene 70086 ENTREZGENE
PANTHER G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PURINOCEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cysltr2 PhenoGen
PRINTS CYSLT2RECPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CYSLTRECPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2RT90 ENTREZGENE
  CLTR2_MOUSE UniProtKB/Swiss-Prot
  Q8R528 ENTREZGENE, UniProtKB/TrEMBL
  Q920A1 ENTREZGENE
UniProt Secondary A2RT90 UniProtKB/Swiss-Prot