UTP11 (UTP11 small subunit processome component)

Gene: UTP11 (UTP11 small subunit processome component) Homo sapiens

Analyze

Symbol:

UTP11

Name:

UTP11 small subunit processome component

RGD ID:

731994

HGNC Page

HGNC:24329

Description:

Enables RNA binding activity. Involved in nervous system development; positive regulation of apoptotic process; and ribosomal small subunit biogenesis. Located in cytoplasm; extracellular space; and nucleolus. Part of small-subunit processome.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CGI-94; CGI94; comparative gene identification transcript 94; probable U3 small nucleolar RNA-associated protein 11; U3 snoRNA-associated protein 11; UTP11, small subunit processome component; UTP11, small subunit processome component homolog; UTP11, small subunit processome component homolog (S. cerevisiae); UTP11-like protein; UTP11-like, U3 small nucleolar ribonucleoprotein; UTP11L

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Mus musculus (house mouse):	Utp11 (UTP11 small subunit processome component)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Rattus norvegicus (Norway rat):	Utp11 (UTP11, small subunit processome component)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Chinchilla lanigera (long-tailed chinchilla):	Utp11 (UTP11 small subunit processome component)	NCBI	Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):	UTP11 (UTP11 small subunit processome component)	NCBI	Ortholog
Canis lupus familiaris (dog):	UTP11 (UTP11 small subunit processome component)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Utp11 (UTP11 small subunit processome component)	NCBI	Ortholog
Sus scrofa (pig):	UTP11 (UTP11 small subunit processome component)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Chlorocebus sabaeus (green monkey):	UTP11 (UTP11 small subunit processome component)	NCBI	Ortholog
Heterocephalus glaber (naked mole-rat):	Utp11 (UTP11 small subunit processome component)	NCBI	Ortholog
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Utp11 (UTP11, small subunit processome component)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Utp11 (UTP11 small subunit processome component)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	utp11 (UTP11 small subunit processome component)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Drosophila melanogaster (fruit fly):	CG1789	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C16C10.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	UTP11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	utp11	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus laevis (African clawed frog):	utp11.L	Alliance	DIOPT (Xenbase)

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	38,012,734 - 38,024,820 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	38,009,258 - 38,024,820 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	38,478,406 - 38,490,492 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	38,250,971 - 38,263,084 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	36,757,020 - 36,769,134 (+)	NCBI		Celera
Cytogenetic Map	1	p34.3	NCBI
HuRef	1	36,596,946 - 36,609,059 (+)	NCBI		HuRef
CHM1_1	1	38,594,085 - 38,606,194 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	37,879,913 - 37,892,000 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease dominant intermediate C (IAGP)

genetic disease (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3-isobutyl-1-methyl-7H-xanthine (EXP)

4,4'-sulfonyldiphenol (EXP)

acrylamide (ISO)

all-trans-retinoic acid (EXP)

ammonium chloride (ISO)

aristolochic acid A (EXP)

Aroclor 1254 (ISO)

arsenite(3-) (EXP)

bisphenol A (EXP,ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) chloride (EXP)

copper(II) sulfate (EXP)

CU-O LINKAGE (EXP)

cyclosporin A (EXP)

dexamethasone (EXP)

disulfiram (EXP)

elemental selenium (EXP)

enzyme inhibitor (EXP)

folic acid (ISO)

FR900359 (EXP)

hydroquinone O-beta-D-glucopyranoside (EXP)

indometacin (EXP)

kojic acid (EXP)

ozone (EXP)

paracetamol (EXP)

paraquat (ISO)

perfluorohexanesulfonic acid (ISO)

piroxicam (EXP)

resveratrol (EXP,ISO)

selenium atom (EXP)

senecionine (ISO)

silicon dioxide (EXP)

sodium arsenate (ISO)

tetrachloromethane (ISO)

thioacetamide (ISO)

valproic acid (EXP)

vinclozolin (ISO)

vitamin E (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

nervous system development (IMP)

positive regulation of apoptotic process (IMP)

ribosomal small subunit biogenesis (IDA)

rRNA processing (IEA)

Cellular Component

cytoplasm (IDA)

extracellular space (IDA)

nucleolus (IBA,IDA,IEA)

nucleoplasm (TAS)

nucleus (IEA)

small-subunit processome (IBA,IDA,IEA)

Molecular Function

protein binding (IPI)

RNA binding (HDA)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7829101	PMID:10810093	PMID:11790298	PMID:11860508	PMID:12477932	PMID:12559088	PMID:14702039	PMID:15489334	PMID:15635413	PMID:16710414	PMID:17081983	PMID:21873635
PMID:22658674	PMID:22681889	PMID:25416956	PMID:25693804	PMID:26186194	PMID:26344197	PMID:26496610	PMID:27926873	PMID:28514442	PMID:29117863	PMID:29395067	PMID:29478914
PMID:29883609	PMID:30021884	PMID:30404004	PMID:32203420	PMID:32807901	PMID:32877691	PMID:33060197	PMID:33306668	PMID:33961781	PMID:34373451	PMID:34516797	PMID:34921745
PMID:35013218	PMID:35944360	PMID:36373674	PMID:36424410	PMID:36526897	PMID:36574265	PMID:36912080	PMID:37087976	PMID:37866880	PMID:38233795	PMID:38360978

Genomics

Comparative Map Data

UTP11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	38,012,734 - 38,024,820 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	38,009,258 - 38,024,820 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	38,478,406 - 38,490,492 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	38,250,971 - 38,263,084 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	36,757,020 - 36,769,134 (+)	NCBI		Celera
Cytogenetic Map	1	p34.3	NCBI
HuRef	1	36,596,946 - 36,609,059 (+)	NCBI		HuRef
CHM1_1	1	38,594,085 - 38,606,194 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	37,879,913 - 37,892,000 (+)	NCBI		T2T-CHM13v2.0

Utp11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	124,571,173 - 124,587,395 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	124,571,953 - 124,587,393 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	124,678,232 - 124,693,610 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	124,678,160 - 124,693,600 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	124,356,008 - 124,370,798 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	124,181,068 - 124,195,858 (-)	NCBI		MGSCv36	mm8
Celera	4	123,004,367 - 123,019,143 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	57.87	NCBI

Utp11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	142,215,974 - 142,230,859 (-)	NCBI		GRCr8
mRatBN7.2	5	136,931,279 - 136,946,164 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	136,931,008 - 136,946,191 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	139,634,525 - 139,649,505 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	141,404,538 - 141,419,516 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	141,411,719 - 141,426,695 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	142,666,288 - 142,681,173 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	142,666,289 - 142,681,173 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	146,437,399 - 146,452,289 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	144,003,627 - 144,018,513 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	135,454,646 - 135,469,575 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Utp11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	15,733,018 - 15,743,678 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	15,733,479 - 15,743,545 (+)	NCBI	ChiLan1.0	ChiLan1.0

UTP11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	188,814,187 - 188,826,005 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	187,943,343 - 187,955,164 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	37,286,274 - 37,297,368 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	38,634,008 - 38,645,068 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	38,633,935 - 38,645,068 (+)	Ensembl	panpan1.1		panPan2

UTP11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	4,569,002 - 4,579,065 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	4,568,202 - 4,579,023 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	4,810,822 - 4,821,250 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	4,696,591 - 4,707,069 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	4,696,584 - 4,707,060 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	4,557,164 - 4,567,601 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	4,623,483 - 4,633,891 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	4,639,987 - 4,650,429 (-)	NCBI		UU_Cfam_GSD_1.0

Utp11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	54,307,541 - 54,319,032 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	20,132,253 - 20,143,981 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	20,132,300 - 20,143,814 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UTP11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	93,993,593 - 94,006,898 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	93,993,686 - 94,006,889 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	86,764,391 - 86,777,591 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UTP11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	94,845,537 - 94,858,198 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	94,845,560 - 94,858,192 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	21,967,810 - 21,980,384 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Utp11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	20,656,380 - 20,668,896 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	20,656,349 - 20,665,739 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in UTP11
3 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 1p36.11-34.2(chr1:24381206-41401517)x3	copy number gain	See cases [RCV000138891]	Chr1:24381206..41401517 [GRCh38] Chr1:24707696..41886350 [GRCh37] Chr1:24580283..41658937 [NCBI36] Chr1:1p36.11-34.2	pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3	copy number loss	not provided [RCV000762767]	Chr1:20608823..120546301 [GRCh37] Chr1:1p36.12-12	likely benign
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3	copy number gain	See cases [RCV000510383]	Chr1:849467..249224684 [GRCh37] Chr1:1p36.33-q44	pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)	copy number gain	See cases [RCV000510926]	Chr1:849467..249224684 [GRCh37] Chr1:1p36.33-q44	pathogenic
GRCh37/hg19 1p34.3(chr1:37766562-38727114)x3	copy number gain	See cases [RCV000511268]	Chr1:37766562..38727114 [GRCh37] Chr1:1p34.3	likely benign
NC_000001.10:g.(?_33241563)_(46663513_?)dup	duplication	Charcot-Marie-Tooth disease dominant intermediate C [RCV000708276]	Chr1:33241563..46663513 [GRCh37] Chr1:1p35.1-34.1	uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3	copy number gain	not provided [RCV000736295]	Chr1:47851..249228449 [GRCh37] Chr1:1p36.33-q44	pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3	copy number gain	not provided [RCV000736305]	Chr1:82154..249218992 [GRCh37] Chr1:1p36.33-q44	pathogenic
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3	copy number gain	Global developmental delay [RCV000787285]	Chr1:103343285..103455144 [GRCh37] Chr1:1p36.22-21.1	uncertain significance
NC_000001.10:g.(?_33241563)_(46663513_?)dup	duplication	Charcot-Marie-Tooth disease, dominant intermediate C [RCV001308684]	Chr1:33241563..46663513 [GRCh37] Chr1:1p35.1-34.1	uncertain significance
GRCh37/hg19 1p35.1-33(chr1:33285582-47891811)	copy number gain	not specified [RCV002052781]	Chr1:33285582..47891811 [GRCh37] Chr1:1p35.1-33	pathogenic
GRCh37/hg19 1p34.3(chr1:36041366-39112237)	copy number loss	not specified [RCV002053236]	Chr1:36041366..39112237 [GRCh37] Chr1:1p34.3	uncertain significance
NM_016037.4(UTP11):c.269C>A (p.Thr90Asn)	single nucleotide variant	Inborn genetic diseases [RCV002729615]	Chr1:38018504 [GRCh38] Chr1:38484176 [GRCh37] Chr1:1p34.3	uncertain significance
NM_016037.4(UTP11):c.487G>A (p.Asp163Asn)	single nucleotide variant	Inborn genetic diseases [RCV002980161]	Chr1:38019303 [GRCh38] Chr1:38484975 [GRCh37] Chr1:1p34.3	uncertain significance
NM_016037.4(UTP11):c.739T>A (p.Phe247Ile)	single nucleotide variant	Inborn genetic diseases [RCV002738053]	Chr1:38023605 [GRCh38] Chr1:38489277 [GRCh37] Chr1:1p34.3	uncertain significance
Single allele	inversion	Bilateral polymicrogyria [RCV003459046]	Chr1:33246132..61045156 [GRCh38] Chr1:1p35.1-31.3	likely pathogenic

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	984
Count of miRNA genes:	591
Interacting mature miRNAs:	662
Transcripts:	ENST00000373014, ENST00000483182, ENST00000486563, ENST00000488453, ENST00000537711
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

RH17970

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	1	38,489,327 - 38,489,453	UniSTS	GRCh37
Build 36	1	38,261,914 - 38,262,040	RGD	NCBI36
Celera	1	36,767,963 - 36,768,089	RGD
Cytogenetic Map	1	p34.3	UniSTS
HuRef	1	36,607,889 - 36,608,015	UniSTS
GeneMap99-GB4 RH Map	1	112.58	UniSTS

D1S3288

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	1	38,489,293 - 38,489,417	UniSTS	GRCh37
Build 36	1	38,261,880 - 38,262,004	RGD	NCBI36
Celera	1	36,767,929 - 36,768,053	RGD
Cytogenetic Map	1	p34.3	UniSTS
HuRef	1	36,607,855 - 36,607,979	UniSTS
Stanford-G3 RH Map	1	1899.0	UniSTS
NCBI RH Map	1	251.9	UniSTS
GeneMap99-G3 RH Map	1	2169.0	UniSTS

SHGC-74616

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	1	38,489,285 - 38,489,408	UniSTS	GRCh37
Build 36	1	38,261,872 - 38,261,995	RGD	NCBI36
Celera	1	36,767,921 - 36,768,044	RGD
Cytogenetic Map	1	p34.3	UniSTS
HuRef	1	36,607,847 - 36,607,970	UniSTS
TNG Radiation Hybrid Map	1	18511.0	UniSTS
GeneMap99-GB4 RH Map	1	115.39	UniSTS

D8S2278

Human Assembly	Chr	Position (strand)	Source
Cytogenetic Map	5	p15.33	UniSTS
Cytogenetic Map	9	q34.3	UniSTS
Cytogenetic Map	4	q32.1	UniSTS
Cytogenetic Map	6	q22	UniSTS
Cytogenetic Map	15	q15	UniSTS
Cytogenetic Map	17	q25	UniSTS
Cytogenetic Map	19	p12	UniSTS
Cytogenetic Map	22	q13.33	UniSTS
Cytogenetic Map	20	q11.22	UniSTS
Cytogenetic Map	20	q13.12	UniSTS
Cytogenetic Map	19	q13.42	UniSTS
Cytogenetic Map	16	q13	UniSTS
Cytogenetic Map	6	p22.1	UniSTS
Cytogenetic Map	9	q34.11	UniSTS
Cytogenetic Map	13	q14.3	UniSTS
Cytogenetic Map	12	q21.33	UniSTS
Cytogenetic Map	8	p23.1	UniSTS
Cytogenetic Map	14	q24.3	UniSTS
Cytogenetic Map	1	p35.1	UniSTS
Cytogenetic Map	22	q12.2	UniSTS
Cytogenetic Map	16	q24	UniSTS
Cytogenetic Map	22	q13.1	UniSTS
Cytogenetic Map	17	q22	UniSTS
Cytogenetic Map	17	q12	UniSTS
Cytogenetic Map	1	p36.11	UniSTS
Cytogenetic Map	6	q25.3	UniSTS
Cytogenetic Map	1	p34.2	UniSTS
Cytogenetic Map	22	q11.21	UniSTS
Cytogenetic Map	3	p25.3	UniSTS
Cytogenetic Map	3	p25.3-p24.1	UniSTS
Cytogenetic Map	11	q23.3	UniSTS
Cytogenetic Map	12	q24.31	UniSTS
Cytogenetic Map	2	q11.2-q12.1	UniSTS
Cytogenetic Map	20	q13.13	UniSTS
Cytogenetic Map	1	p22	UniSTS
Cytogenetic Map	10	q11	UniSTS
Cytogenetic Map	19	p13.3	UniSTS
Cytogenetic Map	8	p11.21	UniSTS
Cytogenetic Map	17	p13.2	UniSTS
Cytogenetic Map	19	p13.2	UniSTS
Cytogenetic Map	12	q21.31	UniSTS
Cytogenetic Map	2	q33-q34	UniSTS
Cytogenetic Map	22	q12.1	UniSTS
Cytogenetic Map	17	q22.2	UniSTS
Cytogenetic Map	17	p13	UniSTS
Cytogenetic Map	7	q34-q35	UniSTS
Cytogenetic Map	X	p22.1	UniSTS
Cytogenetic Map	1	q23.1	UniSTS
Cytogenetic Map	11	p15.4	UniSTS
Cytogenetic Map	10	q22	UniSTS
Cytogenetic Map	16	q24.3	UniSTS
Cytogenetic Map	10	q23.1	UniSTS
Cytogenetic Map	2	q37	UniSTS
Cytogenetic Map	17	q21	UniSTS
Cytogenetic Map	20	q13.31	UniSTS
Cytogenetic Map	6	p21.33	UniSTS
Cytogenetic Map	5	q35.3	UniSTS
Cytogenetic Map	7	q22.1	UniSTS
Cytogenetic Map	2	q37.1	UniSTS
Cytogenetic Map	17	q21.2	UniSTS
Cytogenetic Map	7	q34	UniSTS
Cytogenetic Map	12	p13.31	UniSTS
Cytogenetic Map	11	q12.3	UniSTS
Cytogenetic Map	4	q34.1	UniSTS
Cytogenetic Map	1	p31.1	UniSTS
Cytogenetic Map	6	q25	UniSTS
Cytogenetic Map	17	q25.3	UniSTS
Cytogenetic Map	3	q21.3	UniSTS
Cytogenetic Map	6	p22	UniSTS
Cytogenetic Map	1	p36.21	UniSTS
Cytogenetic Map	11	p15.5	UniSTS
Cytogenetic Map	4	p14	UniSTS
Cytogenetic Map	8	q24	UniSTS
Cytogenetic Map	2	q11.2	UniSTS
Cytogenetic Map	Y	p11.3	UniSTS
Cytogenetic Map	2	p23.1	UniSTS
Cytogenetic Map	7	q36.3	UniSTS
Cytogenetic Map	19	q13.41	UniSTS
Cytogenetic Map	1	p36.33	UniSTS
Cytogenetic Map	12	p12.3	UniSTS
Cytogenetic Map	5	q32	UniSTS
Cytogenetic Map	8	q24.3	UniSTS
Cytogenetic Map	21	q22.2	UniSTS
Cytogenetic Map	1	q21.2	UniSTS
Cytogenetic Map	15	q22.1	UniSTS
Cytogenetic Map	1	p34-p33	UniSTS
Cytogenetic Map	3	q23	UniSTS
Cytogenetic Map	14	q11.2	UniSTS
Cytogenetic Map	17	q21.1	UniSTS
Cytogenetic Map	6	p21.3	UniSTS
Cytogenetic Map	2	q12.3	UniSTS
Cytogenetic Map	3	q25.31	UniSTS
Cytogenetic Map	14	q22	UniSTS
Cytogenetic Map	19	q13.43	UniSTS
Cytogenetic Map	12	q13.12	UniSTS
Cytogenetic Map	12	p13.3	UniSTS
Cytogenetic Map	5	p12	UniSTS
Cytogenetic Map	19	q13.2	UniSTS
Cytogenetic Map	12	q21.1	UniSTS
Cytogenetic Map	X	p11.23	UniSTS
Cytogenetic Map	17	p11.2	UniSTS
Cytogenetic Map	3	p21.31	UniSTS
Cytogenetic Map	18	p11.21	UniSTS
Cytogenetic Map	3	q26.32	UniSTS
Cytogenetic Map	1	p34.3	UniSTS
Cytogenetic Map	13	q11	UniSTS
Cytogenetic Map	4	p16.3	UniSTS
Cytogenetic Map	17	p12	UniSTS
Cytogenetic Map	17	q11.2	UniSTS
Cytogenetic Map	3	p25.1	UniSTS
Cytogenetic Map	14	q12-q13	UniSTS
Cytogenetic Map	22	q13.2	UniSTS
Cytogenetic Map	17	q11.2-q12	UniSTS
Cytogenetic Map	6	p25	UniSTS
Cytogenetic Map	7	q11.23	UniSTS
Cytogenetic Map	11	p15	UniSTS
Cytogenetic Map	4	q31	UniSTS
Cytogenetic Map	8	p11.22	UniSTS
Cytogenetic Map	7	p22	UniSTS
Cytogenetic Map	15	q15-q21.1	UniSTS
Cytogenetic Map	1	p32-p31	UniSTS
Cytogenetic Map	11	q13	UniSTS
Cytogenetic Map	10	q25.3	UniSTS
Cytogenetic Map	16	p13.3	UniSTS
Cytogenetic Map	10	q24.32	UniSTS
Cytogenetic Map	7	p11.2	UniSTS
Cytogenetic Map	10	q22.3	UniSTS
Cytogenetic Map	6	q27	UniSTS
Cytogenetic Map	11	p15.3	UniSTS
Cytogenetic Map	4	q22.1-q23	UniSTS
Cytogenetic Map	1	q22	UniSTS
Cytogenetic Map	8	p21.3	UniSTS
Cytogenetic Map	17	q22-q23.2	UniSTS
Cytogenetic Map	3	q21	UniSTS
Cytogenetic Map	18	q22.3	UniSTS
Cytogenetic Map	17	p13.3	UniSTS
Cytogenetic Map	6	q22.31	UniSTS
Cytogenetic Map	1	p34.1	UniSTS
Cytogenetic Map	11	q13.1	UniSTS
Cytogenetic Map	X	q26.1	UniSTS
Cytogenetic Map	4	q21.21	UniSTS
Cytogenetic Map	16	q22.2	UniSTS
Cytogenetic Map	X	q13.2	UniSTS
Cytogenetic Map	2	q32.1	UniSTS
Cytogenetic Map	X	p22.33	UniSTS
Cytogenetic Map	Y	p11.32	UniSTS
Cytogenetic Map	10	p13	UniSTS
Cytogenetic Map	X	q22.3	UniSTS
Cytogenetic Map	3	q13.13	UniSTS
Cytogenetic Map	3	q27.3	UniSTS
Cytogenetic Map	10	p11.23	UniSTS
Cytogenetic Map	14	q32.11	UniSTS
Cytogenetic Map	2	q21.1	UniSTS
Cytogenetic Map	15	q25.2	UniSTS
Cytogenetic Map	X	p22.2	UniSTS
Cytogenetic Map	11	q14	UniSTS
Cytogenetic Map	13	q33.1	UniSTS
Cytogenetic Map	19	q13.32	UniSTS
Cytogenetic Map	3	p14.3	UniSTS
Cytogenetic Map	1	p31.3	UniSTS
Cytogenetic Map	1	q31-q41	UniSTS
Cytogenetic Map	2	p16.1	UniSTS
Cytogenetic Map	14	q23	UniSTS
Cytogenetic Map	2	q24.2	UniSTS
Cytogenetic Map	7	q31	UniSTS
Cytogenetic Map	11	q13.4	UniSTS
Cytogenetic Map	12	q12	UniSTS
Cytogenetic Map	11	q12.2	UniSTS
Cytogenetic Map	14	q24.2	UniSTS
Cytogenetic Map	19	q13	UniSTS
Cytogenetic Map	20	q11.22-q11.23	UniSTS
Cytogenetic Map	11	p11.2	UniSTS
Cytogenetic Map	16	p12.2	UniSTS
Cytogenetic Map	17	p13.1	UniSTS
Cytogenetic Map	6	p24.3	UniSTS
Cytogenetic Map	9	p24.1	UniSTS
Cytogenetic Map	12	p13.2	UniSTS
Cytogenetic Map	9	p21	UniSTS
Cytogenetic Map	6	p12.3	UniSTS
Cytogenetic Map	3	p12.1	UniSTS
Cytogenetic Map	1	p13.2	UniSTS
Cytogenetic Map	19	p13.11	UniSTS
Cytogenetic Map	17	q24.1	UniSTS
Cytogenetic Map	15	q13.1	UniSTS
Cytogenetic Map	12	q14.3-q15	UniSTS
Cytogenetic Map	15	q11-q13	UniSTS
Cytogenetic Map	12	q15	UniSTS
Cytogenetic Map	3	q28	UniSTS
Cytogenetic Map	6	p25.2	UniSTS
Cytogenetic Map	2	p14	UniSTS
Cytogenetic Map	2	p21	UniSTS
Cytogenetic Map	14	q24.1	UniSTS
Cytogenetic Map	19	q13.12	UniSTS
Cytogenetic Map	19	q13.4	UniSTS
Cytogenetic Map	2	p11.2	UniSTS
Cytogenetic Map	2	p23.3	UniSTS
Cytogenetic Map	1	q44	UniSTS
Cytogenetic Map	14	q32.2	UniSTS
Cytogenetic Map	14	q12	UniSTS
Cytogenetic Map	13	q32.2	UniSTS
Cytogenetic Map	2	q23.3	UniSTS
Cytogenetic Map	7	p21.1	UniSTS
Cytogenetic Map	8	p12-p11	UniSTS
Cytogenetic Map	1	q25	UniSTS
Cytogenetic Map	3	p21.32	UniSTS
Cytogenetic Map	4	q22.1	UniSTS
Cytogenetic Map	10	q24	UniSTS
Cytogenetic Map	15	q13.3	UniSTS
Cytogenetic Map	7	p15.3	UniSTS
Cytogenetic Map	11	q13.2	UniSTS
Cytogenetic Map	13	q32.3	UniSTS
Cytogenetic Map	11	q24	UniSTS
Cytogenetic Map	X	q25	UniSTS
Cytogenetic Map	12	q24.33	UniSTS
Cytogenetic Map	5	q31.3	UniSTS
Cytogenetic Map	3	q13.2	UniSTS
Cytogenetic Map	3	q25.33	UniSTS
Cytogenetic Map	8	q22.2	UniSTS
Cytogenetic Map	5	q21.2	UniSTS
Cytogenetic Map	5	q15	UniSTS
Cytogenetic Map	3	p26.1	UniSTS
Cytogenetic Map	19	p13.13	UniSTS
Cytogenetic Map	19	q13.13	UniSTS
Cytogenetic Map	19	q13.1	UniSTS
Cytogenetic Map	3	p22-p21.3	UniSTS
Cytogenetic Map	16	p11.2	UniSTS
Cytogenetic Map	20	p11	UniSTS
Cytogenetic Map	2	p12	UniSTS
Cytogenetic Map	7	q21.13	UniSTS
Cytogenetic Map	20	q13.33	UniSTS
Cytogenetic Map	5	q33.1	UniSTS
Cytogenetic Map	3	p21.1-p14.3	UniSTS
Cytogenetic Map	6	p12.1	UniSTS
Cytogenetic Map	7	q36.1	UniSTS
Cytogenetic Map	1	q32.3	UniSTS
Cytogenetic Map	2	p25.1-p24.1	UniSTS
Cytogenetic Map	12	q14.3	UniSTS
Cytogenetic Map	6	q16.1	UniSTS
Cytogenetic Map	5	p13.1	UniSTS
Cytogenetic Map	19	q13.33	UniSTS
Cytogenetic Map	16	p13.2	UniSTS
Cytogenetic Map	12	q13.13	UniSTS
Cytogenetic Map	9	q33.1	UniSTS
Cytogenetic Map	11	q23.1	UniSTS
Cytogenetic Map	21	q22.3	UniSTS
Cytogenetic Map	3	q27.1	UniSTS
Cytogenetic Map	7	q35	UniSTS
Cytogenetic Map	16	p12.3	UniSTS
Cytogenetic Map	2	p25.3	UniSTS
Cytogenetic Map	1	q22-q23	UniSTS
Cytogenetic Map	7	p22.1	UniSTS
Cytogenetic Map	6	q21	UniSTS
Cytogenetic Map	3	p26	UniSTS
Cytogenetic Map	4	q32.3	UniSTS
Cytogenetic Map	3	p14.2	UniSTS
Cytogenetic Map	18	q12.1	UniSTS
Cytogenetic Map	1	p36.3-p36.2	UniSTS
Cytogenetic Map	11	q22-q23	UniSTS
Cytogenetic Map	13	q14.11	UniSTS
Cytogenetic Map	12	p11.21	UniSTS
Cytogenetic Map	8	p21.1	UniSTS
Cytogenetic Map	7	p12.3	UniSTS
Cytogenetic Map	6	p22.3	UniSTS
Cytogenetic Map	17	q23.3	UniSTS
Cytogenetic Map	21	q21.1	UniSTS
Cytogenetic Map	18	q11.2	UniSTS
Cytogenetic Map	18	q21.32	UniSTS
Cytogenetic Map	17	q21.31	UniSTS
Cytogenetic Map	15	q15.1	UniSTS
Cytogenetic Map	14	q22.1	UniSTS
Cytogenetic Map	20	q11.23	UniSTS
Cytogenetic Map	20	p12.1	UniSTS
Cytogenetic Map	5	q31.1	UniSTS
Cytogenetic Map	5	p13.2	UniSTS
Cytogenetic Map	2	q33.2	UniSTS
Cytogenetic Map	2	q33.1	UniSTS
Cytogenetic Map	1	q21.1	UniSTS
Cytogenetic Map	16	q23.1	UniSTS
Cytogenetic Map	12	q23.3	UniSTS
Cytogenetic Map	12	q23.1	UniSTS
Cytogenetic Map	10	q22.2	UniSTS
Cytogenetic Map	1	p22.2	UniSTS
Cytogenetic Map	8	q23.3	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
Cytogenetic Map	2	q12	UniSTS
Cytogenetic Map	11	q25	UniSTS
Cytogenetic Map	X	p21.1	UniSTS
Cytogenetic Map	7	p14.3	UniSTS
Cytogenetic Map	9	q34	UniSTS
Cytogenetic Map	6	p21.31	UniSTS
Cytogenetic Map	5	p15.3	UniSTS
Cytogenetic Map	16	q22.1	UniSTS
Cytogenetic Map	15	q21.2	UniSTS
Cytogenetic Map	10	q21-q22	UniSTS
Cytogenetic Map	17	q25.1	UniSTS
Cytogenetic Map	2	p13.1	UniSTS
Cytogenetic Map	1	q32.1	UniSTS
Cytogenetic Map	17	q24	UniSTS
Cytogenetic Map	1	p33-p32	UniSTS
Cytogenetic Map	7	p13-p11.1	UniSTS
Cytogenetic Map	3	p21.3	UniSTS
Cytogenetic Map	7	q31.3	UniSTS
Cytogenetic Map	X	p22.13	UniSTS
Cytogenetic Map	14	q24	UniSTS
Cytogenetic Map	12	q	UniSTS
Cytogenetic Map	1	p13-p12	UniSTS
Cytogenetic Map	4	q32	UniSTS
Cytogenetic Map	9	q22.33	UniSTS
Cytogenetic Map	4	p16.1	UniSTS
Cytogenetic Map	3	q29	UniSTS
Cytogenetic Map	5	q14.1	UniSTS
Cytogenetic Map	10	q21.1	UniSTS
Cytogenetic Map	X	q28	UniSTS
Cytogenetic Map	1	q23.3	UniSTS
Cytogenetic Map	2	q37.3	UniSTS
Cytogenetic Map	7	p14.1	UniSTS
Cytogenetic Map	2	q22.3	UniSTS
Cytogenetic Map	15	q22.31	UniSTS
Cytogenetic Map	5	q31	UniSTS
Cytogenetic Map	7	q21.11	UniSTS
Cytogenetic Map	2	p25.1	UniSTS
Cytogenetic Map	1	q12	UniSTS
Cytogenetic Map	3	q13.1-q13.2	UniSTS
Cytogenetic Map	11	p13	UniSTS
Cytogenetic Map	14	q32.3	UniSTS
Cytogenetic Map	14	q23.3	UniSTS
Cytogenetic Map	6	p21.1	UniSTS
Cytogenetic Map	1	q24	UniSTS
Cytogenetic Map	1	q43	UniSTS
Cytogenetic Map	19	q13.3	UniSTS
Cytogenetic Map	14	q22.3	UniSTS
Cytogenetic Map	14	q31	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

visual system

adipose tissue

appendage

entire extraembryonic component

pharyngeal arch

High

Medium

2020

1666

1298

280

1018

156

4226

1879

2081

283

1417

1459

140

1165

2730

Low

419

1314

428

344

922

309

131

318

1653

135

154

Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_016037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011541555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054336893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF067802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF151852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK023587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK291900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK296018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK308377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL603790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AX882991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC005182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI493106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU620078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU940926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX163866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000373014 ⟹ ENSP00000362105

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	38,012,734 - 38,024,820 (+)	Ensembl

RefSeq Acc Id:

ENST00000483182

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	38,009,258 - 38,019,109 (+)	Ensembl

RefSeq Acc Id:

ENST00000486563

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	38,012,734 - 38,016,976 (+)	Ensembl

RefSeq Acc Id:

ENST00000488453

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	38,016,583 - 38,023,801 (+)	Ensembl

RefSeq Acc Id:

NM_016037 ⟹ NP_057121

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	38,012,734 - 38,024,820 (+)	NCBI
GRCh37	1	38,478,384 - 38,490,497 (+)	RGD
Build 36	1	38,250,971 - 38,263,084 (+)	NCBI Archive
Celera	1	36,757,020 - 36,769,134 (+)	RGD
HuRef	1	36,596,946 - 36,609,059 (+)	ENTREZGENE
CHM1_1	1	38,594,085 - 38,606,194 (+)	NCBI
T2T-CHM13v2.0	1	37,879,913 - 37,892,000 (+)	NCBI

Sequence:

show sequence

AGTGGACTTGGCGGCAGAGGCAGTGCGGATCCGGCGTTCTCCACTGATCTTTTCCAAGGCTGTA
CAGACATGGCGGCGGCTTTTCGGAAGGCGGCTAAGTCCCGGCAGCGGGAACACAGAGAGCGAAG
CCAGCCTGGCTTTCGAAAACATCTGGGCCTGCTGGAGAAAAAGAAAGATTACAAACTTCGTGCA
GATGACTACCGTAAAAAACAAGAATACCTCAAAGCTCTTCGGAAGAAGGCTCTTGAAAAAAATC
CAGATGAATTCTACTACAAAATGACTCGGGTTAAACTCCAGGATGGAGTACATATTATTAAGGA
GACTAAGGAAGAAGTAACCCCAGAACAACTAAAGCTGATGAGAACTCAGGACGTCAAATATATA
GAAATGAAGAGGGTTGCAGAAGCTAAGAAAATCGAAAGACTAAAATCAGAGCTCCATCTGCTGG
ATTTCCAGGGGAAGCAACAGAACAAGCATGTGTTCTTTTTTGACACCAAAAAGGAAGTTGAACA
GTTTGATGTCGCAACTCACCTGCAAACAGCCCCGGAGCTAGTCGACAGAGTCTTTAATAGGCCC
AGGATAGAGACCTTGCAGAAAGAAAAAGTGAAAGGAGTTACCAATCAGACTGGACTTAAGCGAA
TAGCTAAAGAAAGGCAAAAGCAGTATAACTGCCTGACACAGCGGATTGAACGAGAGAAGAAATT
GTTCGTTATTGCTCAGAAAATTCAAACACGCAAAGATCTTATGGATAAAACTCAGAAAGTGAAG
GTGAAGAAAGAAACGGTGAACTCCCCAGCTATTTATAAATTTCAGAGTCGTCGAAAACGTTGAC
GTGTTATAGATAAGCCTTGTCATTCTGTATCAAAAATCTGTTGTCGTTTTCTAGTAACTTCAAA
TTCCATTACTCCAAATGGCATGGTTTTCCGGTTTGTAACCATAACTAAATTGTCAGTCTGACAT
TTAATGTCTTTCTATGGACAACATTAAATCTCCCTCCCTTCTGTAATTGTTTTTGGATTGTGAA
ATTAGTCTTATTTTTATATACTTAATTTTTTTTTTCTTTGAGATAGGGTCTTTGTTGCCAGGCT
GGAAGTGCAGTGTGTGATTATGGCTCACTGCAACTTTGAACTCCTGGGCTCAAGTGATCTTCCT
GCATCAGCCTCTTGAGTAGCTGGGACCACAGACATGTGCCACCATGTCTGAGTAATGTTTAAAT
TTTCTGTAGAGACCAGGTTTTGCCATGTTGGCCAGGCTGGTTTTGAACTCGTGGCCTCAAGCGA
TCCTCCCACCTTGGCCTCCCAAAGGGCTGGGATTACAGGGATGAGCCACTATGCCCAGCCCATA
ATTTTTTTTGTTATGAAACATAGGATCTCATTACAGCAGATTTGGAAAGTAGATTAATTCATTC
CTAATCCCAGTGCTTATTCAATAATAACAAATATTTATTGCATGCTTAACTGTGCTAGGAGCTA
GAGCTGTGGAGGTGGACAATTACTGTGAGTAGTCTAGTTGATTTCCTCCATTTTGTAAAACGAG
GCATCACTTTTTGTCCATGTTTTTGTGTTTTATAGTTACAGTAAACAATTTGATGTCCTACTTT
TTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCCGGACTGCGGACTGCAGTG
GCGCAATCTCGGCTCACTGCAAGCTCCGCTTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTC
CCGAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCTGGCTAATTTTTTTTTGTATTTTTTTA
GTAGAGACGGGGTTTCACCTTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCACCC
GCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCGATGTCCTACT
TTTTAATTAAATCATTAGCTCTTTCCCAGTTTGTTACATCACAAAAGTTTTTTACAGTAATATA
TGCTAGAGTAAACGTTAAAATAAATATTATTTTTAATGA

hide sequence

RefSeq Acc Id:

XM_011541555 ⟹ XP_011539857

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	38,012,734 - 38,024,820 (+)	NCBI

Sequence:

show sequence

CTATTTCCGGTAGGAATCAGTGGACTTGGCGGCAGAGGCAGTGCGGATCCGGCGTTCTCCACTG
ATCTTTTCCAAGGCTGTACAGACATGGCGGCGGCTTTTCGGAAGGCGGCTAAGTCCCGGCAGCG
GGAACACAGAGAGCGAAGCCAGTGACTACCGTAAAAAACAAGAATACCTCAAAGCTCTTCGGAA
GAAGGCTCTTGAAAAAAATCCAGATGAATTCTACTACAAAATGACTCGGGTTAAACTCCAGGAT
GGAGTACATATTATTAAGGAGACTAAGGAAGAAGTAACCCCAGAACAACTAAAGCTGATGAGAA
CTCAGGACGTCAAATATATAGAAATGAAGAGGGTTGCAGAAGCTAAGAAAATCGAAAGACTAAA
ATCAGAGCTCCATCTGCTGGATTTCCAGGGGAAGCAACAGAACAAGCATGTGTTCTTTTTTGAC
ACCAAAAAGGAAGTTGAACAGTTTGATGTCGCAACTCACCTGCAAACAGCCCCGGAGCTAGTCG
ACAGAGTCTTTAATAGGCCCAGGATAGAGACCTTGCAGAAAGAAAAAGTGAAAGGAGTTACCAA
TCAGACTGGACTTAAGCGAATAGCTAAAGAAAGGCAAAAGCAGTATAACTGCCTGACACAGCGG
ATTGAACGAGAGAAGAAATTGTTCGTTATTGCTCAGAAAATTCAAACACGCAAAGATCTTATGG
ATAAAACTCAGAAAGTGAAGGTGAAGAAAGAAACGGTGAACTCCCCAGCTATTTATAAATTTCA
GAGTCGTCGAAAACGTTGACGTGTTATAGATAAGCCTTGTCATTCTGTATCAAAAATCTGTTGT
CGTTTTCTAGTAACTTCAAATTCCATTACTCCAAATGGCATGGTTTTCCGGTTTGTAACCATAA
CTAAATTGTCAGTCTGACATTTAATGTCTTTCTATGGACAACATTAAATCTCCCTCCCTTCTGT
AATTGTT

hide sequence

RefSeq Acc Id:

XM_054336893 ⟹ XP_054192868

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	1	37,879,913 - 37,892,000 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_057121	(Get FASTA)	NCBI Sequence Viewer
	XP_011539857	(Get FASTA)	NCBI Sequence Viewer
	XP_054192868	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD34089	(Get FASTA)	NCBI Sequence Viewer
	AAF75562	(Get FASTA)	NCBI Sequence Viewer
	AAH05182	(Get FASTA)	NCBI Sequence Viewer
	BAF84589	(Get FASTA)	NCBI Sequence Viewer
	BAG58788	(Get FASTA)	NCBI Sequence Viewer
	CAE91801	(Get FASTA)	NCBI Sequence Viewer
	EAX07299	(Get FASTA)	NCBI Sequence Viewer
	EAX07300	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000362105
	ENSP00000362105.4
GenBank Protein	Q9Y3A2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_057121 ⟸ NM_016037
- UniProtKB:	Q9BS98 (UniProtKB/Swiss-Prot), Q5VT93 (UniProtKB/Swiss-Prot), D3DPT7 (UniProtKB/Swiss-Prot), B4DJC6 (UniProtKB/Swiss-Prot), A8K785 (UniProtKB/Swiss-Prot), Q9NS31 (UniProtKB/Swiss-Prot), Q9Y3A2 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAAAFRKAAKSRQREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPD EFYYKMTRVKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDF QGKQQNKHVFFFDTKKEVEQFDVATHLQTAPELVDRVFNRPRIETLQKEKVKGVTNQTGLKRIA KERQKQYNCLTQRIEREKKLFVIAQKIQTRKDLMDKTQKVKVKKETVNSPAIYKFQSRRKR hide sequence

RefSeq Acc Id:	XP_011539857 ⟸ XM_011541555
- Peptide Label:	isoform X1
- Sequence:	show sequence MTRVKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQ NKHVFFFDTKKEVEQFDVATHLQTAPELVDRVFNRPRIETLQKEKVKGVTNQTGLKRIAKERQK QYNCLTQRIEREKKLFVIAQKIQTRKDLMDKTQKVKVKKETVNSPAIYKFQSRRKR hide sequence

RefSeq Acc Id:

ENSP00000362105 ⟸ ENST00000373014

RefSeq Acc Id:	XP_054192868 ⟸ XM_054336893
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9Y3A2-F1-model_v2	AlphaFold	Q9Y3A2	1-253	view protein structure

Promoters

RGD ID:

6855046

Promoter ID:

EPDNEW_H688

Type:

initiation region

Name:

UTP11_1

Description:

UTP11, small subunit processome component homolog

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	38,012,734 - 38,012,794	EPDNEW

RGD ID:

6787200

Promoter ID:

HG_KWN:2100

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, HeLa_S3, K562, NB4

Transcripts:

OTTHUMT00000012964

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	1	38,247,411 - 38,247,911 (+)	MPROMDB

RGD ID:

6787198

Promoter ID:

HG_KWN:2101

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4

Transcripts:

NM_016037, OTTHUMT00000012965, UC009VVM.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	1	38,250,921 - 38,251,462 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:24329	AgrOrtholog
COSMIC	UTP11	COSMIC
Ensembl Genes	ENSG00000183520	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENST00000373014	ENTREZGENE
	ENST00000373014.5	UniProtKB/Swiss-Prot
GTEx	ENSG00000183520	GTEx
HGNC ID	HGNC:24329	ENTREZGENE
Human Proteome Map	UTP11	Human Proteome Map
InterPro	SSU_processome_Utp11	UniProtKB/Swiss-Prot
KEGG Report	hsa:51118	UniProtKB/Swiss-Prot
NCBI Gene	51118	ENTREZGENE
OMIM	609440	OMIM
PANTHER	PTHR12838	UniProtKB/Swiss-Prot
	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11-RELATED	UniProtKB/Swiss-Prot
Pfam	Utp11	UniProtKB/Swiss-Prot
PharmGKB	PA142670630	PharmGKB
PIRSF	U3snoRNP11	UniProtKB/Swiss-Prot
UniProt	A8K785	ENTREZGENE
	B4DJC6	ENTREZGENE
	D3DPT7	ENTREZGENE
	Q5VT93	ENTREZGENE
	Q9BS98	ENTREZGENE
	Q9NS31	ENTREZGENE
	Q9Y3A2	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	A8K785	UniProtKB/Swiss-Prot
	B4DJC6	UniProtKB/Swiss-Prot
	D3DPT7	UniProtKB/Swiss-Prot
	Q5VT93	UniProtKB/Swiss-Prot
	Q9BS98	UniProtKB/Swiss-Prot
	Q9NS31	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-01-29	UTP11	UTP11 small subunit processome component		UTP11, small subunit processome component	Symbol and/or name change	5135510	APPROVED
2017-05-30	UTP11	UTP11, small subunit processome component		UTP11, small subunit processome component homolog (S. cerevisiae)	Symbol and/or name change	5135510	APPROVED
2016-02-29	UTP11	UTP11, small subunit processome component homolog (S. cerevisiae)	UTP11L	UTP11-like, U3 small nucleolar ribonucleoprotein (yeast)	Symbol and/or name change	5135510	APPROVED
2014-03-12	UTP11L	UTP11-like, U3 small nucleolar ribonucleoprotein (yeast)		UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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