SSBP3 (single stranded DNA binding protein 3) - Rat Genome Database

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Gene: SSBP3 (single stranded DNA binding protein 3) Homo sapiens
Analyze
Symbol: SSBP3
Name: single stranded DNA binding protein 3
RGD ID: 731988
HGNC Page HGNC:15674
Description: Predicted to enable single-stranded DNA binding activity and transcription coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within hematopoietic progenitor cell differentiation. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CSDP; FLJ10355; sequence-specific single-stranded-DNA-binding protein; single-stranded DNA-binding protein 3; SSDP; SSDP1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: SSBP3P1   SSBP3P2  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38154,225,432 - 54,413,490 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl154,225,432 - 54,413,479 (-)EnsemblGRCh38hg38GRCh38
GRCh37154,691,105 - 54,879,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36154,464,783 - 54,644,680 (-)NCBINCBI36Build 36hg18NCBI36
Build 34154,404,615 - 54,583,917NCBI
Celera152,979,826 - 53,159,767 (-)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef152,806,513 - 52,987,387 (-)NCBIHuRef
CHM1_1154,807,651 - 54,988,420 (-)NCBICHM1_1
T2T-CHM13v2.0154,108,317 - 54,296,354 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (EXP)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (ISO)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP)
arsenite(3-)  (EXP)
arsenous acid  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (EXP)
calcium silicate  (ISO)
carbon nanotube  (ISO)
CGP 52608  (EXP)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (EXP)
dexamethasone  (EXP)
diarsenic trioxide  (EXP)
diazinon  (EXP)
Dibutyl phosphate  (EXP)
dibutyl phthalate  (ISO)
diethylstilbestrol  (ISO)
diquat  (ISO)
doxorubicin  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
FR900359  (EXP)
fulvestrant  (EXP)
gentamycin  (ISO)
indometacin  (EXP)
L-methionine  (ISO)
lead diacetate  (EXP)
methapyrilene  (EXP)
methidathion  (ISO)
oxaliplatin  (ISO)
paracetamol  (ISO)
PhIP  (ISO)
pirinixic acid  (ISO)
potassium chromate  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (ISO)
pyrogallol  (ISO)
rac-lactic acid  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (EXP)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
triphenyl phosphate  (EXP,ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
urethane  (EXP)
valproic acid  (ISO)
zinc protoporphyrin  (EXP)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7566098   PMID:10524251   PMID:12079286   PMID:12381786   PMID:12477932   PMID:14702039   PMID:15489334   PMID:16325762   PMID:16407974   PMID:17207965   PMID:18080319   PMID:18330356  
PMID:19497860   PMID:20211142   PMID:20379614   PMID:20603019   PMID:21832049   PMID:21873635   PMID:23275444   PMID:24722188   PMID:24981860   PMID:25416956   PMID:26167880   PMID:26186194  
PMID:26344197   PMID:26495868   PMID:26593974   PMID:26687479   PMID:26760575   PMID:27565346   PMID:27609421   PMID:28514442   PMID:28611215   PMID:29955894   PMID:30363057   PMID:30833792  
PMID:31527615   PMID:32296183   PMID:32393512   PMID:33961781   PMID:35140242   PMID:37536498   PMID:37788672   PMID:38360978  


Genomics

Comparative Map Data
SSBP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38154,225,432 - 54,413,490 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl154,225,432 - 54,413,479 (-)EnsemblGRCh38hg38GRCh38
GRCh37154,691,105 - 54,879,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36154,464,783 - 54,644,680 (-)NCBINCBI36Build 36hg18NCBI36
Build 34154,404,615 - 54,583,917NCBI
Celera152,979,826 - 53,159,767 (-)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef152,806,513 - 52,987,387 (-)NCBIHuRef
CHM1_1154,807,651 - 54,988,420 (-)NCBICHM1_1
T2T-CHM13v2.0154,108,317 - 54,296,354 (-)NCBIT2T-CHM13v2.0
Ssbp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394106,768,667 - 106,906,891 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4106,767,898 - 106,906,891 (+)EnsemblGRCm39 Ensembl
GRCm384106,911,470 - 107,049,694 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4106,910,701 - 107,049,694 (+)EnsemblGRCm38mm10GRCm38
MGSCv374106,584,075 - 106,722,299 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364106,409,402 - 106,547,626 (+)NCBIMGSCv36mm8
Celera4105,272,425 - 105,410,615 (+)NCBICelera
Cytogenetic Map4C7NCBI
cM Map449.9NCBI
Ssbp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85126,920,145 - 127,057,968 (+)NCBIGRCr8
mRatBN7.25121,691,370 - 121,828,035 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5121,691,393 - 121,827,992 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5124,310,490 - 124,447,492 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05126,033,508 - 126,170,510 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05126,084,812 - 126,221,819 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05126,511,339 - 126,649,830 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5126,511,350 - 126,648,661 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05130,364,154 - 130,500,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45127,987,980 - 128,127,771 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15127,993,205 - 128,132,997 (+)NCBI
Celera5120,438,879 - 120,575,397 (+)NCBICelera
Cytogenetic Map5q34NCBI
Ssbp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554644,901,151 - 5,047,656 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554644,901,150 - 5,049,341 (+)NCBIChiLan1.0ChiLan1.0
SSBP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21172,429,230 - 172,608,737 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11171,570,463 - 171,749,558 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0153,501,656 - 53,680,682 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1155,094,800 - 55,281,039 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl155,094,820 - 55,272,207 (-)Ensemblpanpan1.1panPan2
SSBP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1554,690,632 - 54,826,691 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl554,662,840 - 54,824,960 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha554,729,165 - 54,893,490 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0554,849,788 - 55,013,185 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl554,849,889 - 55,013,451 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1554,844,717 - 55,009,418 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0554,734,421 - 54,898,735 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0555,123,610 - 55,288,431 (+)NCBIUU_Cfam_GSD_1.0
Ssbp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505868,458,512 - 68,614,243 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365226,802,052 - 6,956,129 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365226,802,057 - 6,957,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SSBP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6157,911,493 - 158,081,476 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16157,911,583 - 158,081,478 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SSBP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12078,528,630 - 78,708,518 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603338,577,763 - 38,758,509 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ssbp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624934161,054 - 311,937 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624934161,323 - 313,621 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SSBP3
39 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p32.3-31.3(chr1:50222546-61618373)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051819]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051819]|See cases [RCV000051819] Chr1:50222546..61618373 [GRCh38]
Chr1:50688218..62084045 [GRCh37]
Chr1:50460805..61856633 [NCBI36]
Chr1:1p32.3-31.3
pathogenic
GRCh38/hg38 1p32.3-31.1(chr1:52595352-76767765)x3 copy number gain See cases [RCV000051822] Chr1:52595352..76767765 [GRCh38]
Chr1:53061024..77233450 [GRCh37]
Chr1:52833612..77006038 [NCBI36]
Chr1:1p32.3-31.1
pathogenic
GRCh38/hg38 1p32.3(chr1:54207426-54756958)x1 copy number loss See cases [RCV000053840] Chr1:54207426..54756958 [GRCh38]
Chr1:54673099..55222631 [GRCh37]
Chr1:54445687..54995219 [NCBI36]
Chr1:1p32.3
pathogenic
GRCh38/hg38 1p32.3-31.3(chr1:53738212-61439648)x1 copy number loss See cases [RCV000053839] Chr1:53738212..61439648 [GRCh38]
Chr1:54203885..61905320 [GRCh37]
Chr1:53976473..61677908 [NCBI36]
Chr1:1p32.3-31.3
pathogenic
NM_001009955.3(SSBP3):c.1040C>T (p.Ser347Phe) single nucleotide variant Malignant melanoma [RCV000064825] Chr1:54228271 [GRCh38]
Chr1:54693944 [GRCh37]
Chr1:54466532 [NCBI36]
Chr1:1p32.3
not provided
NM_001009955.3(SSBP3):c.276+10485G>C single nucleotide variant Lung cancer [RCV000090868] Chr1:54391376 [GRCh38]
Chr1:54857049 [GRCh37]
Chr1:1p32.3
uncertain significance
GRCh38/hg38 1p32.3-31.3(chr1:53627272-64248854)x1 copy number loss See cases [RCV000139470] Chr1:53627272..64248854 [GRCh38]
Chr1:54092945..64714537 [GRCh37]
Chr1:53865533..64487125 [NCBI36]
Chr1:1p32.3-31.3
pathogenic
GRCh38/hg38 1p32.3-31.3(chr1:52787503-67339873)x3 copy number gain See cases [RCV000141758] Chr1:52787503..67339873 [GRCh38]
Chr1:53253175..67805556 [GRCh37]
Chr1:53025763..67578144 [NCBI36]
Chr1:1p32.3-31.3
likely pathogenic
GRCh38/hg38 1p32.3(chr1:53823735-54328113)x3 copy number gain See cases [RCV000142034] Chr1:53823735..54328113 [GRCh38]
Chr1:54289408..54793786 [GRCh37]
Chr1:54061996..54566374 [NCBI36]
Chr1:1p32.3
uncertain significance
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12
likely benign
GRCh37/hg19 1p32.3(chr1:51729573-55164001)x1 copy number loss See cases [RCV000447334] Chr1:51729573..55164001 [GRCh37]
Chr1:1p32.3
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NM_145716.4(SSBP3):c.981G>C (p.Glu327Asp) single nucleotide variant not specified [RCV004303493] Chr1:54228773 [GRCh38]
Chr1:54694446 [GRCh37]
Chr1:1p32.3
uncertain significance
GRCh37/hg19 1p32.3(chr1:54575439-55381546)x1 copy number loss not provided [RCV000684573] Chr1:54575439..55381546 [GRCh37]
Chr1:1p32.3
uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1
uncertain significance
GRCh37/hg19 1p32.3-31.3(chr1:53675707-66644963)x1 copy number loss Chromosome 1p32-p31 deletion syndrome [RCV001263218] Chr1:53675707..66644963 [GRCh37]
Chr1:1p32.3-31.3
pathogenic
GRCh37/hg19 1p32.3-32.2(chr1:51941877-56688514) copy number loss Abnormality of the kidney [RCV001352641] Chr1:51941877..56688514 [GRCh37]
Chr1:1p32.3-32.2
pathogenic
NM_145716.4(SSBP3):c.729dup (p.Gly244fs) duplication Developmental disorder [RCV003128005] Chr1:54242199..54242200 [GRCh38]
Chr1:54707872..54707873 [GRCh37]
Chr1:1p32.3
uncertain significance
NM_145716.4(SSBP3):c.177del (p.Leu59fs) deletion Neurodevelopmental disorder [RCV001780038] Chr1:54404590 [GRCh38]
Chr1:54870263 [GRCh37]
Chr1:1p32.3
uncertain significance
NM_145716.4(SSBP3):c.8C>T (p.Ala3Val) single nucleotide variant not specified [RCV004183266] Chr1:54406001 [GRCh38]
Chr1:54871674 [GRCh37]
Chr1:1p32.3
uncertain significance
NM_145716.4(SSBP3):c.485C>T (p.Pro162Leu) single nucleotide variant not specified [RCV004140534] Chr1:54257149 [GRCh38]
Chr1:54722822 [GRCh37]
Chr1:1p32.3
uncertain significance
NM_145716.4(SSBP3):c.722C>T (p.Pro241Leu) single nucleotide variant not specified [RCV004122005] Chr1:54242207 [GRCh38]
Chr1:54707880 [GRCh37]
Chr1:1p32.3
uncertain significance
NM_145716.4(SSBP3):c.524C>T (p.Pro175Leu) single nucleotide variant not specified [RCV004128786] Chr1:54251844 [GRCh38]
Chr1:54717517 [GRCh37]
Chr1:1p32.3
uncertain significance
NM_145716.4(SSBP3):c.323A>G (p.Asn108Ser) single nucleotide variant not specified [RCV004195530] Chr1:54281481 [GRCh38]
Chr1:54747154 [GRCh37]
Chr1:1p32.3
uncertain significance
NM_145716.4(SSBP3):c.664G>A (p.Gly222Ser) single nucleotide variant not specified [RCV004077280] Chr1:54243287 [GRCh38]
Chr1:54708960 [GRCh37]
Chr1:1p32.3
uncertain significance
NM_145716.4(SSBP3):c.938G>C (p.Gly313Ala) single nucleotide variant not specified [RCV004171913] Chr1:54228816 [GRCh38]
Chr1:54694489 [GRCh37]
Chr1:1p32.3
uncertain significance
NM_145716.4(SSBP3):c.469G>A (p.Ala157Thr) single nucleotide variant not specified [RCV004181110] Chr1:54257165 [GRCh38]
Chr1:54722838 [GRCh37]
Chr1:1p32.3
uncertain significance
NM_145716.4(SSBP3):c.407C>T (p.Pro136Leu) single nucleotide variant not specified [RCV004269926] Chr1:54258109 [GRCh38]
Chr1:54723782 [GRCh37]
Chr1:1p32.3
uncertain significance
Single allele inversion Bilateral polymicrogyria [RCV003459046] Chr1:33246132..61045156 [GRCh38]
Chr1:1p35.1-31.3
likely pathogenic
NM_145716.4(SSBP3):c.852C>T (p.Pro284=) single nucleotide variant not provided [RCV003406504] Chr1:54240909 [GRCh38]
Chr1:54706582 [GRCh37]
Chr1:1p32.3
likely benign
GRCh37/hg19 1p33-32.2(chr1:47493178-57042671)x3 copy number gain not specified [RCV003986484] Chr1:47493178..57042671 [GRCh37]
Chr1:1p33-32.2
likely pathogenic
NM_145716.4(SSBP3):c.1093G>A (p.Gly365Ser) single nucleotide variant not specified [RCV004460732] Chr1:54228299 [GRCh38]
Chr1:54693972 [GRCh37]
Chr1:1p32.3
uncertain significance
NM_145716.4(SSBP3):c.488C>T (p.Pro163Leu) single nucleotide variant not specified [RCV004460734] Chr1:54257146 [GRCh38]
Chr1:54722819 [GRCh37]
Chr1:1p32.3
uncertain significance
NM_145716.4(SSBP3):c.667A>G (p.Met223Val) single nucleotide variant not specified [RCV004460735] Chr1:54243284 [GRCh38]
Chr1:54708957 [GRCh37]
Chr1:1p32.3
uncertain significance
NM_145716.4(SSBP3):c.109G>A (p.Ala37Thr) single nucleotide variant not specified [RCV004460733] Chr1:54404878 [GRCh38]
Chr1:54870551 [GRCh37]
Chr1:1p32.3
uncertain significance
NM_145716.4(SSBP3):c.880A>G (p.Ile294Val) single nucleotide variant not specified [RCV004675454] Chr1:54239176 [GRCh38]
Chr1:54704849 [GRCh37]
Chr1:1p32.3
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3412
Count of miRNA genes:949
Interacting mature miRNAs:1149
Transcripts:ENST00000326956, ENST00000357475, ENST00000371319, ENST00000371320, ENST00000417664, ENST00000420121, ENST00000426150, ENST00000444533, ENST00000448572, ENST00000525990, ENST00000528787, ENST00000528930, ENST00000530618, ENST00000533209, ENST00000533946
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597326746GWAS1422820_Hbody mass index QTL GWAS1422820 (human)1e-09body mass indexbody mass index (BMI) (CMO:0000105)15426548254265483Human
597425818GWAS1521892_Helectrocardiography QTL GWAS1521892 (human)4e-11electrocardiography15423895654238957Human
597189532GWAS1285606_Hsubiculum volume QTL GWAS1285606 (human)9e-10subiculum volume15438931154389312Human
597072280GWAS1168354_Hblood urea nitrogen measurement QTL GWAS1168354 (human)7e-11blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)15438316754383168Human
597190792GWAS1286866_Hhippocampal volume QTL GWAS1286866 (human)9e-13hippocampal volume15438931154389312Human
407080530GWAS729506_Hsodium measurement QTL GWAS729506 (human)2e-09sodium measurementblood sodium level (CMO:0000499)15426318554263186Human
597077124GWAS1173198_HP wave duration QTL GWAS1173198 (human)2e-08T wave morphology measurementT wave amplitude (CMO:0000277)15427694554276946Human
597617291GWAS1674151_Hplatelet count QTL GWAS1674151 (human)1e-12platelet quantity (VT:0003179)platelet count (CMO:0000029)15439457954394580Human
597034638GWAS1130712_HTPE interval measurement QTL GWAS1130712 (human)5e-12TPE interval measurement15427694554276946Human
597077134GWAS1173208_HP wave duration QTL GWAS1173208 (human)3e-09P wave durationP wave duration (CMO:0000264)15427694554276946Human
597286530GWAS1382604_Hblood urea nitrogen measurement QTL GWAS1382604 (human)8e-20blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)15437892954378930Human
597332353GWAS1428427_Hneuroimaging measurement QTL GWAS1428427 (human)0.000005neuroimaging measurement15438931154389312Human
597086858GWAS1182932_HPR interval QTL GWAS1182932 (human)3e-11PR intervalPR interval (CMO:0000233)15427609454276095Human
597233028GWAS1329102_Hblood protein measurement QTL GWAS1329102 (human)2e-38blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)15437937154379372Human
597172923GWAS1268997_Hbody mass index QTL GWAS1268997 (human)8e-13body mass indexbody mass index (BMI) (CMO:0000105)15426436354264364Human
407022180GWAS671156_Hplatelet count QTL GWAS671156 (human)2e-12platelet quantity (VT:0003179)platelet count (CMO:0000029)15439323954393240Human
406948202GWAS597178_HPR interval QTL GWAS597178 (human)1e-09PR intervalPR interval (CMO:0000233)15426041554260416Human
597313201GWAS1409275_Hcortical surface area measurement QTL GWAS1409275 (human)8e-11cerebral cortex morphology trait (VT:0000788)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)15438840654388407Human
597191347GWAS1287421_Hhippocampal CA1 volume QTL GWAS1287421 (human)3e-10hippocampal CA1 volume15438931154389312Human
597080762GWAS1176836_Hmonocyte count QTL GWAS1176836 (human)1e-13monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)15427679854276799Human
597299381GWAS1395455_Hbody mass index QTL GWAS1395455 (human)2e-10body mass indexbody mass index (BMI) (CMO:0000105)15423107054231071Human
597314485GWAS1410559_Htriglyceride measurement QTL GWAS1410559 (human)3e-08triglyceride measurementblood triglyceride level (CMO:0000118)15439319954393200Human
597053101GWAS1149175_Hmetabolic syndrome QTL GWAS1149175 (human)3e-12metabolic syndrome15426319154263192Human
597229988GWAS1326062_Hblood protein measurement QTL GWAS1326062 (human)5e-14blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)15436051454360515Human
597503395GWAS1599469_Htriglyceride measurement QTL GWAS1599469 (human)1e-13triglyceride measurementblood triglyceride level (CMO:0000118)15441143054411431Human
597191335GWAS1287409_Hhippocampal CA1 volume QTL GWAS1287409 (human)2e-14hippocampal CA1 volume15438931154389312Human
597124817GWAS1220891_Hblood protein measurement QTL GWAS1220891 (human)5e-40blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)15437937154379372Human
597437914GWAS1533988_Htriglyceride:HDL cholesterol ratio QTL GWAS1533988 (human)0.0000004blood triglyceride amount (VT:0002644)15441143054411431Human
597259473GWAS1355547_Htotal cholesterol measurement QTL GWAS1355547 (human)8e-46total cholesterol measurementblood total cholesterol level (CMO:0000051)15435844454358445Human
597191888GWAS1287962_Hhippocampus molecular layer volume QTL GWAS1287962 (human)2e-08hippocampus molecular layer volume15438931154389312Human
597058271GWAS1154345_Hage at menarche QTL GWAS1154345 (human)2e-08age at menarche15426318554263186Human
597122524GWAS1218598_Helectrocardiography QTL GWAS1218598 (human)2e-23electrocardiography15427679854276799Human
597122523GWAS1218597_Helectrocardiography QTL GWAS1218597 (human)7e-24electrocardiography15427679854276799Human
597122522GWAS1218596_Helectrocardiography QTL GWAS1218596 (human)7e-25electrocardiography15427679854276799Human
597176022GWAS1272096_Hbody mass index QTL GWAS1272096 (human)3e-12body mass indexbody mass index (BMI) (CMO:0000105)15426497854264979Human
597122521GWAS1218595_Helectrocardiography QTL GWAS1218595 (human)1e-24electrocardiography15427679854276799Human
597122520GWAS1218594_Helectrocardiography QTL GWAS1218594 (human)2e-24electrocardiography15427679854276799Human
597233878GWAS1329952_Hblood protein measurement QTL GWAS1329952 (human)4e-31blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)15436051454360515Human
597190088GWAS1286162_Hdentate gyrus volume measurement QTL GWAS1286162 (human)9e-15dentate gyrus volume measurement15438931154389312Human
597190600GWAS1286674_Hsubiculum volume QTL GWAS1286674 (human)2e-10subiculum volume15438931154389312Human
597098176GWAS1194250_Hcomparative body size at age 10, self-reported QTL GWAS1194250 (human)2e-12comparative body size at age 10, self-reported15426319154263192Human
596979394GWAS1098913_Hbody height QTL GWAS1098913 (human)4e-20body height (VT:0001253)body height (CMO:0000106)15441190854411909Human
597190593GWAS1286667_Hhippocampal CA4 volume QTL GWAS1286667 (human)5e-14hippocampal CA4 volume15438931154389312Human
596988616GWAS1108135_Hbody mass index QTL GWAS1108135 (human)2e-10body mass indexbody mass index (BMI) (CMO:0000105)15423107054231071Human
597028299GWAS1124373_Hblood urea nitrogen measurement QTL GWAS1124373 (human)8e-14blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)15438315454383155Human
597086920GWAS1182994_Hneuroimaging measurement, brain volume measurement QTL GWAS1182994 (human)9e-10neuroimaging measurement, brain volume measurementbrain morphological measurement (CMO:0000136)15438840654388407Human
597191879GWAS1287953_Hsubiculum volume QTL GWAS1287953 (human)1e-16subiculum volume15438931154389312Human
597614785GWAS1671645_Hplatelet count QTL GWAS1671645 (human)1e-14platelet quantity (VT:0003179)platelet count (CMO:0000029)15439614154396142Human
597119223GWAS1215297_Helectrocardiography QTL GWAS1215297 (human)6e-29electrocardiography15427679854276799Human
597346810GWAS1442884_Hbody mass index QTL GWAS1442884 (human)1e-11body mass indexbody mass index (BMI) (CMO:0000105)15427743854277439Human
597119222GWAS1215296_Helectrocardiography QTL GWAS1215296 (human)3e-12electrocardiography15427679854276799Human
597313531GWAS1409605_Hcortical thickness QTL GWAS1409605 (human)4e-10cortical thickness15437616554376166Human
2314561GLUCO47_HGlucose level QTL 47 (human)1.1Glucose level14477336070773360Human
597268987GWAS1365061_Hlow density lipoprotein cholesterol measurement QTL GWAS1365061 (human)3e-63low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)15435844454358445Human
1578620LDLPS20_HLow density lipoprotein particle size QTL 21 (human)2.040.00046LDL particle size15253110578531105Human
597191679GWAS1287753_Hhippocampal volume QTL GWAS1287753 (human)2e-16hippocampal volume15438931154389312Human
597189360GWAS1285434_Hhippocampal volume QTL GWAS1285434 (human)1e-14hippocampal volume15438931154389312Human
597104634GWAS1200708_Hplatelet component distribution width QTL GWAS1200708 (human)7e-15platelet component distribution widthplatelet distribution width (CMO:0001350)15437619154376192Human
597096678GWAS1192752_Hbody height QTL GWAS1192752 (human)4e-08body height (VT:0001253)body height (CMO:0000106)15426319154263192Human
597026788GWAS1122862_Hbody mass index QTL GWAS1122862 (human)1e-12body mass indexbody mass index (BMI) (CMO:0000105)15426319154263192Human
1578602LDLPS21_HLow density lipoprotein particle size QTL 21 (human)2.050.00037LDL particle size15253110578531105Human
597520879GWAS1616953_Hbody fat percentage QTL GWAS1616953 (human)4e-08body fat mass (VT:0010482)body fat percentage (CMO:0000302)15441155954411560Human
597189867GWAS1285941_Hhippocampus molecular layer volume QTL GWAS1285941 (human)1e-11hippocampus molecular layer volume15438931154389312Human
597349615GWAS1445689_Helectrocardiography QTL GWAS1445689 (human)6e-18electrocardiography15427191754271918Human
1578594LDLPS19_HLow density lipoprotein particle size QTL 19 (human)2.560.00009LDL particle size15253110578531105Human
597191138GWAS1287212_Hhippocampal CA4 volume QTL GWAS1287212 (human)8e-11hippocampal CA4 volume15438931154389312Human
597084397GWAS1180471_Hbrain measurement, neuroimaging measurement QTL GWAS1180471 (human)9e-21brain measurement, neuroimaging measurementbrain measurement (CMO:0000911)15438732154387322Human
597189861GWAS1285935_Hhippocampus molecular layer volume QTL GWAS1285935 (human)1e-12hippocampus molecular layer volume15438931154389312Human
597190631GWAS1286705_Hhippocampal volume QTL GWAS1286705 (human)1e-17hippocampal volume15438931154389312Human
597414628GWAS1510702_Htriglyceride measurement QTL GWAS1510702 (human)1e-10triglyceride measurementblood triglyceride level (CMO:0000118)15441143054411431Human
597025557GWAS1121631_Hbody mass index QTL GWAS1121631 (human)3e-09body mass indexbody mass index (BMI) (CMO:0000105)15426548254265483Human
597118999GWAS1215073_Helectrocardiography QTL GWAS1215073 (human)9e-22electrocardiography15427679854276799Human
597236251GWAS1332325_Hblood protein measurement QTL GWAS1332325 (human)1e-40blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)15437937154379372Human
597190939GWAS1287013_Hdentate gyrus volume measurement QTL GWAS1287013 (human)3e-09dentate gyrus volume measurement15438931154389312Human
597611800GWAS1668660_Hplatelet count QTL GWAS1668660 (human)1e-11platelet quantity (VT:0003179)platelet count (CMO:0000029)15439309154393092Human
597237534GWAS1333608_Hblood protein measurement QTL GWAS1333608 (human)2e-37blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)15437937154379372Human
597167889GWAS1263963_Hblood urea nitrogen measurement QTL GWAS1263963 (human)2e-11blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)15438321854383219Human
597119005GWAS1215079_Helectrocardiography QTL GWAS1215079 (human)7e-17electrocardiography15427679854276799Human
597119004GWAS1215078_Helectrocardiography QTL GWAS1215078 (human)7e-18electrocardiography15427679854276799Human
597119003GWAS1215077_Helectrocardiography QTL GWAS1215077 (human)7e-19electrocardiography15427679854276799Human
597392663GWAS1488737_Htriglyceride measurement QTL GWAS1488737 (human)8e-14triglyceride measurementblood triglyceride level (CMO:0000118)15441143054411431Human
406961356GWAS610332_Hage at menarche QTL GWAS610332 (human)1e-08age at menarche15426319154263192Human
597119002GWAS1215076_Helectrocardiography QTL GWAS1215076 (human)3e-20electrocardiography15427679854276799Human
597191189GWAS1287263_Hhippocampal volume QTL GWAS1287263 (human)2e-17hippocampal volume15437924054379241Human
597189397GWAS1285471_Hhippocampus molecular layer volume QTL GWAS1285471 (human)6e-12hippocampus molecular layer volume15438931154389312Human
597119001GWAS1215075_Helectrocardiography QTL GWAS1215075 (human)7e-21electrocardiography15427679854276799Human
597170454GWAS1266528_Hprotein measurement QTL GWAS1266528 (human)6e-12protein measurement15437619154376192Human
597441554GWAS1537628_Htriglyceride:HDL cholesterol ratio QTL GWAS1537628 (human)5e-08blood triglyceride amount (VT:0002644)15441143054411431Human
597119000GWAS1215074_Helectrocardiography QTL GWAS1215074 (human)3e-21electrocardiography15427679854276799Human
597190423GWAS1286497_Hhippocampal CA1 volume QTL GWAS1286497 (human)9e-11hippocampal CA1 volume15438931154389312Human
597119236GWAS1215310_Helectrocardiography QTL GWAS1215310 (human)1e-15electrocardiography15427679854276799Human
597086211GWAS1182285_Helectrocardiography QTL GWAS1182285 (human)0.000007electrocardiography15427640554276406Human
597205006GWAS1301080_Hbrain volume measurement QTL GWAS1301080 (human)9e-13brain volume measurementbrain morphological measurement (CMO:0000136)15437616554376166Human
597459972GWAS1556046_Hbody height QTL GWAS1556046 (human)4e-20body height (VT:0001253)body height (CMO:0000106)15441190854411909Human
597088012GWAS1184086_Hcortical surface area measurement, neuroimaging measurement QTL GWAS1184086 (human)2e-13cerebral cortex morphology trait (VT:0000788)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)15438091354380914Human
597236741GWAS1332815_HHypermetropia QTL GWAS1332815 (human)0.000009Hypermetropia15426388554263886Human
596954120GWAS1073639_HT wave morphology measurement QTL GWAS1073639 (human)2e-08T wave morphology measurementT wave amplitude (CMO:0000277)15427694554276946Human
597078538GWAS1174612_Hbilirubin measurement QTL GWAS1174612 (human)0.000007bilirubin measurementserum total bilirubin level (CMO:0000376)15431050254310503Human
597326387GWAS1422461_Hnon-high density lipoprotein cholesterol measurement QTL GWAS1422461 (human)1e-43non-high density lipoprotein cholesterol measurementblood non-high density lipoprotein cholesterol level (CMO:0003967)15435844454358445Human
597087804GWAS1183878_Hbrain measurement, neuroimaging measurement QTL GWAS1183878 (human)3e-09brain measurement, neuroimaging measurementbrain measurement (CMO:0000911)15438840654388407Human
407095287GWAS744263_HT wave morphology measurement QTL GWAS744263 (human)4e-08T wave morphology measurementT wave amplitude (CMO:0000277)15427694554276946Human
597146658GWAS1242732_Hprostate carcinoma QTL GWAS1242732 (human)1e-09prostate carcinoma15436629654366297Human
597139488GWAS1235562_Hneuroimaging measurement QTL GWAS1235562 (human)8e-23neuroimaging measurement15438840654388407Human
597190432GWAS1286506_Hhippocampal CA3 volume QTL GWAS1286506 (human)1e-09hippocampal CA3 volume15437924054379241Human
597078060GWAS1174134_Hplatelet count QTL GWAS1174134 (human)4e-12platelet quantity (VT:0003179)platelet count (CMO:0000029)15439309154393092Human
597231143GWAS1327217_Hblood protein measurement QTL GWAS1327217 (human)7e-19blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)15437937154379372Human
597191515GWAS1287589_Hhippocampal CA3 volume QTL GWAS1287589 (human)5e-11hippocampal CA3 volume15438931154389312Human
597201246GWAS1297320_HFuchs endothelial corneal dystrophy QTL GWAS1297320 (human)7e-15Fuchs endothelial corneal dystrophy15432409954324100Human
597192031GWAS1288105_Hhippocampal volume QTL GWAS1288105 (human)5e-19hippocampal volume15438931154389312Human
407007124GWAS656100_Hbody mass index QTL GWAS656100 (human)2e-09body mass indexbody mass index (BMI) (CMO:0000105)15426319154263192Human
597147713GWAS1243787_Htriglyceride measurement QTL GWAS1243787 (human)2e-09triglyceride measurementblood triglyceride level (CMO:0000118)15439586754395868Human
597190991GWAS1287065_Hhippocampal volume QTL GWAS1287065 (human)6e-19hippocampal volume15438931154389312Human
597085512GWAS1181586_Hneuroimaging measurement, brain volume measurement QTL GWAS1181586 (human)2e-11neuroimaging measurement, brain volume measurementbrain morphological measurement (CMO:0000136)15438840654388407Human
407040413GWAS689389_Hbody mass index QTL GWAS689389 (human)0.000004body mass indexbody mass index (BMI) (CMO:0000105)15423107054231071Human
597202040GWAS1298114_Helectrocardiography QTL GWAS1298114 (human)3e-12electrocardiography15427191754271918Human
597332602GWAS1428676_HS-warfarin measurement QTL GWAS1428676 (human)0.000009S-warfarin measurement15429159854291599Human
597234555GWAS1330629_Hblood protein measurement QTL GWAS1330629 (human)2e-32blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)15436051454360515Human
597122175GWAS1218249_Helectrocardiography QTL GWAS1218249 (human)1e-25electrocardiography15427679854276799Human
597341810GWAS1437884_HAbdominal Aortic Aneurysm QTL GWAS1437884 (human)3e-08Abdominal Aortic Aneurysm15430968254309683Human
597122174GWAS1218248_Helectrocardiography QTL GWAS1218248 (human)7e-26electrocardiography15427679854276799Human
597232496GWAS1328570_Hblood protein measurement QTL GWAS1328570 (human)4e-43blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)15437937154379372Human
597131390GWAS1227464_Hcortical surface area measurement QTL GWAS1227464 (human)1e-11cerebral cortex morphology trait (VT:0000788)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)15438091354380914Human
597190769GWAS1286843_Hhippocampal CA1 volume QTL GWAS1286843 (human)5e-09hippocampal CA1 volume15438931154389312Human
597122173GWAS1218247_Helectrocardiography QTL GWAS1218247 (human)3e-26electrocardiography15427679854276799Human
597122172GWAS1218246_Helectrocardiography QTL GWAS1218246 (human)2e-27electrocardiography15427679854276799Human
597122171GWAS1218245_Helectrocardiography QTL GWAS1218245 (human)6e-28electrocardiography15427679854276799Human
597122170GWAS1218244_Helectrocardiography QTL GWAS1218244 (human)3e-27electrocardiography15427679854276799Human
597122169GWAS1218243_Helectrocardiography QTL GWAS1218243 (human)4e-27electrocardiography15427679854276799Human
597232758GWAS1328832_Hblood protein measurement QTL GWAS1328832 (human)6e-42blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)15437937154379372Human
597215080GWAS1311154_Hbody height QTL GWAS1311154 (human)4e-13body height (VT:0001253)body height (CMO:0000106)15424914854249149Human
597215081GWAS1311155_Hbody height QTL GWAS1311155 (human)9e-10body height (VT:0001253)body height (CMO:0000106)15425115054251151Human
597190761GWAS1286835_Hsubiculum volume QTL GWAS1286835 (human)4e-09subiculum volume15438931154389312Human
597034596GWAS1130670_HTPE interval measurement QTL GWAS1130670 (human)6e-21TPE interval measurement15427609454276095Human
597232491GWAS1328565_Hblood protein measurement QTL GWAS1328565 (human)1e-37blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)15437937154379372Human
597232746GWAS1328820_Hblood protein measurement QTL GWAS1328820 (human)1e-39blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)15437937154379372Human
596958560GWAS1078079_Hmetabolic syndrome QTL GWAS1078079 (human)3e-12metabolic syndrome15426319154263192Human
597034595GWAS1130669_HTPE interval measurement QTL GWAS1130669 (human)1e-10TPE interval measurement15427694554276946Human
597181549GWAS1277623_Halpha-parvin measurement QTL GWAS1277623 (human)4e-14alpha-parvin measurement15437339654373397Human
597288032GWAS1384106_Hbody weight QTL GWAS1384106 (human)4e-10body mass (VT:0001259)body weight (CMO:0000012)15438243254382433Human
597228642GWAS1324716_Hblood protein measurement QTL GWAS1324716 (human)4e-38blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)15437937154379372Human

Markers in Region
SHGC-74834  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,692,356 - 54,692,505UniSTSGRCh37
Build 36154,464,944 - 54,465,093RGDNCBI36
Celera152,979,987 - 52,980,136RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,807,765 - 52,807,914UniSTS
TNG Radiation Hybrid Map129702.0UniSTS
GeneMap99-GB4 RH Map1152.63UniSTS
GeneMap99-GB4 RH Map1152.02UniSTS
Whitehead-RH Map1173.9UniSTS
AL009798  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,692,129 - 54,692,309UniSTSGRCh37
Build 36154,464,717 - 54,464,897RGDNCBI36
Celera152,979,760 - 52,979,940RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,807,538 - 52,807,718UniSTS
SHGC-74857  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,833,630 - 54,833,758UniSTSGRCh37
Build 36154,606,218 - 54,606,346RGDNCBI36
Celera153,121,305 - 53,121,433RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,949,008 - 52,949,136UniSTS
TNG Radiation Hybrid Map129624.0UniSTS
GeneMap99-GB4 RH Map1152.63UniSTS
NCBI RH Map1325.5UniSTS
RH69813  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,843,995 - 54,844,131UniSTSGRCh37
Build 36154,616,583 - 54,616,719RGDNCBI36
Celera153,131,671 - 53,131,807RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,959,374 - 52,959,510UniSTS
GeneMap99-GB4 RH Map1152.63UniSTS
NCBI RH Map1339.0UniSTS
A008B22  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,838,666 - 54,838,913UniSTSGRCh37
Build 36154,611,254 - 54,611,501RGDNCBI36
Celera153,126,342 - 53,126,589RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,954,045 - 52,954,292UniSTS
GeneMap99-GB4 RH Map1152.63UniSTS
RH79748  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,855,604 - 54,855,823UniSTSGRCh37
Build 36154,628,192 - 54,628,411RGDNCBI36
Celera153,143,280 - 53,143,499RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,970,983 - 52,971,202UniSTS
AL033786  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,723,167 - 54,723,312UniSTSGRCh37
Build 36154,495,755 - 54,495,900RGDNCBI36
Celera153,010,716 - 53,010,861RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,838,539 - 52,838,684UniSTS
SGC32284  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,852,388 - 54,852,537UniSTSGRCh37
Build 36154,624,976 - 54,625,125RGDNCBI36
Celera153,140,064 - 53,140,213RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,967,767 - 52,967,916UniSTS
Whitehead-RH Map1173.6UniSTS
STS-Z40052  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,691,231 - 54,691,283UniSTSGRCh37
Build 36154,463,819 - 54,463,871RGDNCBI36
Celera152,978,862 - 52,978,914RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,806,640 - 52,806,692UniSTS
GeneMap99-GB4 RH Map1153.35UniSTS
STS-T49250  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371779,218,894 - 79,219,040UniSTSGRCh37
GRCh37154,695,097 - 54,695,497UniSTSGRCh37
Build 36154,467,685 - 54,468,085RGDNCBI36
Celera152,982,729 - 52,983,129RGD
Celera1775,849,438 - 75,849,584UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q25.3UniSTS
HuRef1774,654,990 - 74,655,136UniSTS
HuRef152,810,508 - 52,810,908UniSTS
GeneMap99-GB4 RH Map17527.2UniSTS
NCBI RH Map17810.0UniSTS
SHGC-153764  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,719,165 - 54,719,357UniSTSGRCh37
Build 36154,491,753 - 54,491,945RGDNCBI36
Celera153,006,714 - 53,006,906RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,834,537 - 52,834,729UniSTS
TNG Radiation Hybrid Map129685.0UniSTS
GDB:1318452  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37739,885,860 - 39,886,097UniSTSGRCh37
Build 36739,852,385 - 39,852,622RGDNCBI36
Celera739,874,071 - 39,874,308RGD
HuRef739,769,951 - 39,770,188UniSTS
CRA_TCAGchr7v2739,923,741 - 39,923,978UniSTS
SSBP3__5320  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,692,355 - 54,692,821UniSTSGRCh37
Build 36154,464,943 - 54,465,409RGDNCBI36
Celera152,979,986 - 52,980,452RGD
HuRef152,807,764 - 52,808,230UniSTS
G20421  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,692,066 - 54,692,273UniSTSGRCh37
Build 36154,464,654 - 54,464,861RGDNCBI36
Celera152,979,697 - 52,979,904RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,807,475 - 52,807,682UniSTS
A005Q36  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,692,066 - 54,692,273UniSTSGRCh37
Build 36154,464,654 - 54,464,861RGDNCBI36
Celera152,979,697 - 52,979,904RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,807,475 - 52,807,682UniSTS
TNG Radiation Hybrid Map129689.0UniSTS
GeneMap99-GB4 RH Map1152.63UniSTS
NCBI RH Map1339.0UniSTS
RH70403  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,838,685 - 54,838,816UniSTSGRCh37
Build 36154,611,273 - 54,611,404RGDNCBI36
Celera153,126,361 - 53,126,492RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,954,064 - 52,954,195UniSTS
GeneMap99-GB4 RH Map1152.63UniSTS
NCBI RH Map1339.0UniSTS
SHGC-58180  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,756,894 - 54,757,041UniSTSGRCh37
Build 36154,529,482 - 54,529,629RGDNCBI36
Celera153,044,438 - 53,044,585RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,872,279 - 52,872,426UniSTS
TNG Radiation Hybrid Map129649.0UniSTS
D1S3134  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37154,858,037 - 54,858,287UniSTSGRCh37
Build 36154,630,625 - 54,630,875RGDNCBI36
Celera153,145,713 - 53,145,963RGD
Cytogenetic Map1p32.3UniSTS
HuRef152,973,416 - 52,973,666UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2434 2788 2250 4953 1725 2351 5 623 1951 465 2269 7297 6466 53 3715 1 851 1742 1616 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001009955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006710545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF086085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF500116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH010567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI565975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK093975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK289474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL035415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL161644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL354778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL519196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX876245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC127866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF060746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ051652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN602300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000326956
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,225,433 - 54,356,818 (-)Ensembl
Ensembl Acc Id: ENST00000357475   ⟹   ENSP00000350067
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,225,433 - 54,406,223 (-)Ensembl
Ensembl Acc Id: ENST00000371319   ⟹   ENSP00000360370
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,225,433 - 54,406,008 (-)Ensembl
Ensembl Acc Id: ENST00000371320   ⟹   ENSP00000360371
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,227,055 - 54,402,409 (-)Ensembl
Ensembl Acc Id: ENST00000417664   ⟹   ENSP00000414361
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,225,433 - 54,405,504 (-)Ensembl
Ensembl Acc Id: ENST00000420121
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,239,096 - 54,257,266 (-)Ensembl
Ensembl Acc Id: ENST00000426150
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,228,255 - 54,325,439 (-)Ensembl
Ensembl Acc Id: ENST00000444533   ⟹   ENSP00000405880
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,238,989 - 54,251,860 (-)Ensembl
Ensembl Acc Id: ENST00000448572
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,412,708 - 54,413,466 (-)Ensembl
Ensembl Acc Id: ENST00000525990   ⟹   ENSP00000431654
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,243,237 - 54,413,479 (-)Ensembl
Ensembl Acc Id: ENST00000528787
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,243,272 - 54,335,881 (-)Ensembl
Ensembl Acc Id: ENST00000528930
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,225,433 - 54,229,455 (-)Ensembl
Ensembl Acc Id: ENST00000530618
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,242,856 - 54,251,671 (-)Ensembl
Ensembl Acc Id: ENST00000533209
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,243,189 - 54,326,472 (-)Ensembl
Ensembl Acc Id: ENST00000533946
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,225,433 - 54,404,633 (-)Ensembl
Ensembl Acc Id: ENST00000610401   ⟹   ENSP00000479674
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl154,225,432 - 54,406,394 (-)Ensembl
RefSeq Acc Id: NM_001009955   ⟹   NP_001009955
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,406,394 (-)NCBI
GRCh37154,691,104 - 54,872,068 (-)NCBI
Build 36154,464,783 - 54,644,680 (-)NCBI Archive
Celera152,979,826 - 53,159,767 (-)RGD
HuRef152,806,513 - 52,987,387 (-)NCBI
CHM1_1154,807,651 - 54,988,420 (-)NCBI
T2T-CHM13v2.0154,108,317 - 54,289,259 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001394360   ⟹   NP_001381289
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,406,394 (-)NCBI
T2T-CHM13v2.0154,108,317 - 54,289,259 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001394361   ⟹   NP_001381290
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,406,394 (-)NCBI
T2T-CHM13v2.0154,108,317 - 54,289,259 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001394362   ⟹   NP_001381291
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,406,394 (-)NCBI
T2T-CHM13v2.0154,108,317 - 54,289,259 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001394363   ⟹   NP_001381292
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,406,394 (-)NCBI
T2T-CHM13v2.0154,108,317 - 54,289,259 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001394364   ⟹   NP_001381293
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,413,490 (-)NCBI
T2T-CHM13v2.0154,108,317 - 54,296,354 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001394365   ⟹   NP_001381294
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,413,490 (-)NCBI
T2T-CHM13v2.0154,108,317 - 54,296,354 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001394366   ⟹   NP_001381295
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,413,490 (-)NCBI
T2T-CHM13v2.0154,108,317 - 54,296,354 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001394367   ⟹   NP_001381296
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,413,490 (-)NCBI
T2T-CHM13v2.0154,108,317 - 54,296,354 (-)NCBI
Sequence:
RefSeq Acc Id: NM_018070   ⟹   NP_060540
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,406,394 (-)NCBI
GRCh37154,691,104 - 54,872,068 (-)NCBI
Build 36154,464,783 - 54,644,567 (-)NCBI Archive
Celera152,979,826 - 53,159,767 (-)RGD
HuRef152,806,513 - 52,987,387 (-)NCBI
CHM1_1154,807,651 - 54,988,420 (-)NCBI
T2T-CHM13v2.0154,108,317 - 54,289,259 (-)NCBI
Sequence:
RefSeq Acc Id: NM_145716   ⟹   NP_663768
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,406,394 (-)NCBI
GRCh37154,691,104 - 54,872,068 (-)NCBI
Build 36154,464,783 - 54,644,567 (-)NCBI Archive
Celera152,979,826 - 53,159,767 (-)RGD
HuRef152,806,513 - 52,987,387 (-)NCBI
CHM1_1154,807,651 - 54,988,420 (-)NCBI
T2T-CHM13v2.0154,108,317 - 54,289,259 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017000897   ⟹   XP_016856386
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,405,259 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017000898   ⟹   XP_016856387
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,335,880 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047416692   ⟹   XP_047272648
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,359,207 (-)NCBI
RefSeq Acc Id: XM_047416693   ⟹   XP_047272649
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,359,207 (-)NCBI
RefSeq Acc Id: XM_047416695   ⟹   XP_047272651
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,359,207 (-)NCBI
RefSeq Acc Id: XM_047416697   ⟹   XP_047272653
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,225,432 - 54,405,328 (-)NCBI
RefSeq Acc Id: XM_054335740   ⟹   XP_054191715
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0154,108,317 - 54,288,125 (-)NCBI
RefSeq Acc Id: XM_054335741   ⟹   XP_054191716
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0154,108,317 - 54,288,194 (-)NCBI
RefSeq Acc Id: XM_054335742   ⟹   XP_054191717
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0154,108,317 - 54,219,239 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001009955 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381289 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381290 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381291 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381292 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381293 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381294 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381295 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381296 (Get FASTA)   NCBI Sequence Viewer  
  NP_060540 (Get FASTA)   NCBI Sequence Viewer  
  NP_663768 (Get FASTA)   NCBI Sequence Viewer  
  XP_016856386 (Get FASTA)   NCBI Sequence Viewer  
  XP_016856387 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272648 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272649 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272651 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272653 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191715 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191716 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191717 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH03605 (Get FASTA)   NCBI Sequence Viewer  
  AAH04335 (Get FASTA)   NCBI Sequence Viewer  
  AAH66365 (Get FASTA)   NCBI Sequence Viewer  
  AAI27867 (Get FASTA)   NCBI Sequence Viewer  
  AAK21984 (Get FASTA)   NCBI Sequence Viewer  
  AAK21985 (Get FASTA)   NCBI Sequence Viewer  
  AAM22101 (Get FASTA)   NCBI Sequence Viewer  
  BAA91561 (Get FASTA)   NCBI Sequence Viewer  
  BAF82163 (Get FASTA)   NCBI Sequence Viewer  
  CAE89185 (Get FASTA)   NCBI Sequence Viewer  
  EAX06688 (Get FASTA)   NCBI Sequence Viewer  
  EAX06689 (Get FASTA)   NCBI Sequence Viewer  
  EAX06690 (Get FASTA)   NCBI Sequence Viewer  
  EAX06691 (Get FASTA)   NCBI Sequence Viewer  
  EAX06692 (Get FASTA)   NCBI Sequence Viewer  
  EAX06693 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000350067
  ENSP00000350067.4
  ENSP00000360370
  ENSP00000360370.3
  ENSP00000405880.1
  ENSP00000414361
  ENSP00000414361.2
  ENSP00000431654.1
  ENSP00000479674
  ENSP00000479674.2
GenBank Protein Q9BWW4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001009955   ⟸   NM_001009955
- Peptide Label: isoform c
- UniProtKB: A0A087WVT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_060540   ⟸   NM_018070
- Peptide Label: isoform b
- UniProtKB: A0A087WVT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_663768   ⟸   NM_145716
- Peptide Label: isoform a
- UniProtKB: Q9BWW4 (UniProtKB/Swiss-Prot),   Q9BWW3 (UniProtKB/Swiss-Prot),   Q9BTM0 (UniProtKB/Swiss-Prot),   Q5T861 (UniProtKB/Swiss-Prot),   Q5T860 (UniProtKB/Swiss-Prot),   A8K0A9 (UniProtKB/Swiss-Prot),   A0A087WVT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016856386   ⟸   XM_017000897
- Peptide Label: isoform X1
- UniProtKB: Q9NW25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016856387   ⟸   XM_017000898
- Peptide Label: isoform X1
- UniProtKB: Q9NW25 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000360370   ⟸   ENST00000371319
Ensembl Acc Id: ENSP00000360371   ⟸   ENST00000371320
Ensembl Acc Id: ENSP00000479674   ⟸   ENST00000610401
Ensembl Acc Id: ENSP00000414361   ⟸   ENST00000417664
Ensembl Acc Id: ENSP00000405880   ⟸   ENST00000444533
Ensembl Acc Id: ENSP00000431654   ⟸   ENST00000525990
Ensembl Acc Id: ENSP00000350067   ⟸   ENST00000357475
RefSeq Acc Id: NP_001381294   ⟸   NM_001394365
- Peptide Label: isoform i
- UniProtKB: Q9BT57 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381295   ⟸   NM_001394366
- Peptide Label: isoform i
- UniProtKB: Q9BT57 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381293   ⟸   NM_001394364
- Peptide Label: isoform h
- UniProtKB: Q9NW25 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381296   ⟸   NM_001394367
- Peptide Label: isoform j
- UniProtKB: Q9BT57 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381290   ⟸   NM_001394361
- Peptide Label: isoofrm e
- UniProtKB: A0A087WVT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381291   ⟸   NM_001394362
- Peptide Label: isosform f
- UniProtKB: A0A087WVT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381292   ⟸   NM_001394363
- Peptide Label: isoform g
- UniProtKB: A0A087WVT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381289   ⟸   NM_001394360
- Peptide Label: isoform d
- UniProtKB: A0A087WVT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047272653   ⟸   XM_047416697
- Peptide Label: isoform X2
- UniProtKB: Q9BT57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047272651   ⟸   XM_047416695
- Peptide Label: isoform X3
- UniProtKB: Q9BT57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047272649   ⟸   XM_047416693
- Peptide Label: isoform X2
- UniProtKB: Q9BT57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047272648   ⟸   XM_047416692
- Peptide Label: isoform X1
- UniProtKB: Q9NW25 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054191716   ⟸   XM_054335741
- Peptide Label: isoform X2
- UniProtKB: Q9BT57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054191715   ⟸   XM_054335740
- Peptide Label: isoform X1
- UniProtKB: Q9NW25 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054191717   ⟸   XM_054335742
- Peptide Label: isoform X1
- UniProtKB: Q9NW25 (UniProtKB/TrEMBL)
Protein Domains
LisH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9BWW4-F1-model_v2 AlphaFold Q9BWW4 1-388 view protein structure

Promoters
RGD ID:6855630
Promoter ID:EPDNEW_H980
Type:initiation region
Name:SSBP3_3
Description:single stranded DNA binding protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H981  EPDNEW_H982  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,406,154 - 54,406,214EPDNEW
RGD ID:6855632
Promoter ID:EPDNEW_H981
Type:initiation region
Name:SSBP3_1
Description:single stranded DNA binding protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H980  EPDNEW_H982  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,406,394 - 54,406,454EPDNEW
RGD ID:6855634
Promoter ID:EPDNEW_H982
Type:initiation region
Name:SSBP3_2
Description:single stranded DNA binding protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H980  EPDNEW_H981  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38154,413,474 - 54,413,534EPDNEW
RGD ID:6786932
Promoter ID:HG_KWN:2837
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3
Transcripts:UC001CXD.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36154,467,271 - 54,468,027 (-)MPROMDB
RGD ID:6809726
Promoter ID:HG_ACW:2218
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:SSBP3.EAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 36154,594,836 - 54,595,336 (-)MPROMDB
RGD ID:6809727
Promoter ID:HG_ACW:2223
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   Lymphoblastoid
Transcripts:SSBP3.HAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 36154,643,416 - 54,643,916 (-)MPROMDB
RGD ID:6786929
Promoter ID:HG_KWN:2844
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001009955,   OTTHUMT00000022721,   UC001CXF.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36154,644,791 - 54,645,592 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:15674 AgrOrtholog
COSMIC SSBP3 COSMIC
Ensembl Genes ENSG00000157216 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000326956 ENTREZGENE
  ENST00000357475 ENTREZGENE
  ENST00000357475.9 UniProtKB/Swiss-Prot
  ENST00000371319 ENTREZGENE
  ENST00000371319.8 UniProtKB/Swiss-Prot
  ENST00000417664 ENTREZGENE
  ENST00000417664.7 UniProtKB/TrEMBL
  ENST00000444533.5 UniProtKB/TrEMBL
  ENST00000525990.1 UniProtKB/TrEMBL
  ENST00000610401 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000610401.6 UniProtKB/Swiss-Prot
GTEx ENSG00000157216 GTEx
HGNC ID HGNC:15674 ENTREZGENE
Human Proteome Map SSBP3 Human Proteome Map
InterPro LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSDP_DNA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:23648 UniProtKB/Swiss-Prot
NCBI Gene SSBP3 ENTREZGENE
OMIM 607390 OMIM
PANTHER SINGLE STRANDED DNA BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SINGLE-STRANDED DNA-BINDING PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SSDP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA38017 PharmGKB
PRINTS SSDNABINDING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE LISH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WVT6 ENTREZGENE, UniProtKB/TrEMBL
  A8K0A9 ENTREZGENE
  E9PK49_HUMAN UniProtKB/TrEMBL
  Q5T860 ENTREZGENE
  Q5T861 ENTREZGENE
  Q5T863_HUMAN UniProtKB/TrEMBL
  Q9BT57 ENTREZGENE, UniProtKB/TrEMBL
  Q9BTM0 ENTREZGENE
  Q9BWW3 ENTREZGENE
  Q9BWW4 ENTREZGENE
  Q9NW25 ENTREZGENE, UniProtKB/TrEMBL
  SSBP3_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A8K0A9 UniProtKB/Swiss-Prot
  Q5T860 UniProtKB/Swiss-Prot
  Q5T861 UniProtKB/Swiss-Prot
  Q9BTM0 UniProtKB/Swiss-Prot
  Q9BWW3 UniProtKB/Swiss-Prot