Car5a (carbonic anhydrase 5a, mitochondrial) - Rat Genome Database

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Gene: Car5a (carbonic anhydrase 5a, mitochondrial) Mus musculus
Analyze
Symbol: Car5a
Name: carbonic anhydrase 5a, mitochondrial
RGD ID: 731919
MGI Page MGI
Description: Enables carbonate dehydratase activity. Predicted to act upstream of or within gluconeogenesis. Located in mitochondrion. Is expressed in inner ear; liver; metanephros; and trunk. Orthologous to human CA5A (carbonic anhydrase 5A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ca; CA Y; CA-VA; Ca5a; Car5; carbonate dehydratase VA; carbonic anhydrase 5, mitochondrial; carbonic anhydrase 5b, mitochondrial; carbonic anhydrase VA; CAV
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,642,874 - 122,671,651 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8122,642,865 - 122,671,643 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388121,916,135 - 121,944,912 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,916,126 - 121,944,904 (-)Ensemblmm10GRCm38
MGSCv378124,440,035 - 124,468,812 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368121,987,915 - 122,017,051 (-)NCBIMGSCv36mm8
MGSCv368124,802,236 - 124,830,994 (-)NCBIMGSCv36mm8
Celera8126,138,230 - 126,172,629 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.81NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,1-dichloroethene  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-trinitrotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,4-dinitrotoluene  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acetazolamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
bisphenol F  (EXP,ISO)
buspirone  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (EXP)
C60 fullerene  (ISO)
carbon nanotube  (EXP)
carbonates  (ISO)
chloric acid  (ISO)
chlorpyrifos  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dibenzofurans  (EXP)
dimethyl sulfoxide  (ISO)
diquat  (EXP)
epoxiconazole  (EXP)
fumonisin B1  (EXP)
furan  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
molybdate  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (ISO)
nitric acid  (ISO)
okadaic acid  (ISO)
oryzalin  (ISO)
paracetamol  (EXP,ISO)
perchlorate  (ISO)
phenformin  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP,ISO)
propiconazole  (EXP)
propofol  (ISO)
rotenone  (ISO)
senecionine  (EXP)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sulfadimethoxine  (ISO)
sulfamic acid  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
tungstate  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)
mitochondrion  (IBA,IEA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
3. Mitochondrial carbonic anhydrase (isozyme V) in mouse and rat: cDNA cloning, expression, subcellular localization, processing, and tissue distribution. Nagao Y, etal., Proc Natl Acad Sci U S A 1994 Oct 25;91(22):10330-4.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2109313   PMID:7479916   PMID:7929150   PMID:9069129   PMID:9882455   PMID:10677517   PMID:11851394   PMID:12477932   PMID:14600151   PMID:14610273   PMID:14681479   PMID:15489334  
PMID:17362527   PMID:17626619   PMID:18614015   PMID:18799693   PMID:21873635   PMID:22109883   PMID:23233153   PMID:23589845   PMID:28131914   PMID:29768498   PMID:36464834  


Genomics

Comparative Map Data
Car5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,642,874 - 122,671,651 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8122,642,865 - 122,671,643 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388121,916,135 - 121,944,912 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,916,126 - 121,944,904 (-)Ensemblmm10GRCm38
MGSCv378124,440,035 - 124,468,812 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368121,987,915 - 122,017,051 (-)NCBIMGSCv36mm8
MGSCv368124,802,236 - 124,830,994 (-)NCBIMGSCv36mm8
Celera8126,138,230 - 126,172,629 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.81NCBI
CA5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381687,881,549 - 87,936,529 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1687,881,546 - 87,936,580 (-)Ensemblhg38GRCh38
GRCh371687,915,155 - 87,970,135 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361686,479,126 - 86,527,613 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341686,479,125 - 86,527,613NCBI
Celera1672,219,173 - 72,267,375 (-)NCBICelera
Cytogenetic Map16q24.2NCBI
HuRef1673,662,132 - 73,710,650 (-)NCBIHuRef
CHM1_11689,333,043 - 89,381,480 (-)NCBICHM1_1
T2T-CHM13v2.01693,954,203 - 94,009,111 (-)NCBIT2T-CHM13v2.0
Ca5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,881,678 - 66,911,486 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1966,881,693 - 66,911,486 (-)EnsemblGRCr8
mRatBN7.21949,973,092 - 50,002,948 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,973,107 - 50,002,906 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1956,765,427 - 56,795,202 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01957,448,040 - 57,477,851 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01959,664,027 - 59,693,795 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01954,731,829 - 54,761,697 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,731,859 - 54,761,670 (-)Ensemblrn6Rnor6.0
Rnor_5.01965,451,126 - 65,480,815 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41952,158,607 - 52,188,664 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1949,218,046 - 49,247,995 (-)NCBICelera
RGSC_v3.11952,163,493 - 52,193,545 (-)NCBI
Cytogenetic Map19q12NCBI
Ca5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555412,139,920 - 2,160,597 (-)Ensembl
ChiLan1.0NW_0049555412,141,450 - 2,159,955 (-)NCBIChiLan1.0ChiLan1.0
CA5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21897,653,307 - 97,706,766 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116103,574,183 - 103,588,635 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01668,564,400 - 68,618,614 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11687,887,288 - 87,903,159 (-)NCBIPanPan1.1PanPan1.1panPan2
CA5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1565,269,855 - 65,297,593 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl565,269,635 - 65,296,777 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha565,280,118 - 65,307,768 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0565,489,652 - 65,517,389 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl565,489,538 - 65,516,573 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1565,515,185 - 65,542,854 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0565,346,901 - 65,374,559 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0565,753,935 - 65,781,642 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ca5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934925,719,672 - 25,742,042 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366411,480,325 - 1,495,490 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366411,478,285 - 1,495,490 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,506,042 - 1,538,777 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.161,495,615 - 1,539,390 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CA5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1573,284,536 - 73,333,629 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660472,374,418 - 2,429,386 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ca5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247461,293,875 - 1,315,890 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247461,293,619 - 1,323,067 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ca5a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11741,560,357 - 41,589,343 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Car5a
2657 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:398
Count of miRNA genes:311
Interacting mature miRNAs:346
Transcripts:ENSMUST00000057653, ENSMUST00000151462
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse
26884375Skwq2_mskull length QTL 2, 5 week (mouse)8120726739130027694Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8111481497130127694Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
4141546Mrdq3_mmodifier of retinal degeneration QTL 3 (mouse)Not determined114439420126055880Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse

Markers in Region
Car5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv378124,440,057 - 124,440,259UniSTSGRCm37
Celera8126,138,252 - 126,138,454UniSTS
Cytogenetic Map8E1UniSTS
cM Map867.0UniSTS
cM Map865.0UniSTS
cM Map867.0UniSTS
Car5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388121,916,157 - 121,916,359UniSTSGRCm38
MGSCv378124,440,057 - 124,440,259UniSTSGRCm37
Celera8126,138,252 - 126,138,454UniSTS
Cytogenetic Map8E1UniSTS
cM Map867.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000057653   ⟹   ENSMUSP00000060457
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8122,642,865 - 122,671,643 (-)Ensembl
GRCm38.p6 Ensembl8121,916,126 - 121,944,904 (-)Ensembl
Ensembl Acc Id: ENSMUST00000151462
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8122,644,793 - 122,654,213 (-)Ensembl
GRCm38.p6 Ensembl8121,918,054 - 121,927,474 (-)Ensembl
RefSeq Acc Id: NM_007608   ⟹   NP_031634
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398122,642,874 - 122,671,651 (-)NCBI
GRCm388121,916,135 - 121,944,912 (-)ENTREZGENE
MGSCv378124,440,035 - 124,468,812 (-)RGD
Celera8126,138,230 - 126,172,629 (-)RGD
cM Map8 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_031634 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH30174 (Get FASTA)   NCBI Sequence Viewer  
  CAA36233 (Get FASTA)   NCBI Sequence Viewer  
  EDL11669 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000060457
  ENSMUSP00000060457.8
GenBank Protein P23589 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_031634   ⟸   NM_007608
- Peptide Label: precursor
- UniProtKB: P23589 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000060457   ⟸   ENSMUST00000057653
Protein Domains
Alpha-carbonic anhydrase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P23589-F1-model_v2 AlphaFold P23589 1-299 view protein structure

Promoters
RGD ID:8668499
Promoter ID:EPDNEW_M12281
Type:initiation region
Name:Car5a_1
Description:Mus musculus carbonic anhydrase 5a, mitochondrial , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388121,944,863 - 121,944,923EPDNEW
RGD ID:6842882
Promoter ID:MM_KWN:55980
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000076969
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368124,451,271 - 124,452,372 (-)MPROMDB
RGD ID:6842880
Promoter ID:MM_KWN:55981
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000076968
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368124,468,521 - 124,469,021 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:101946 AgrOrtholog
Ensembl Genes ENSMUSG00000025317 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000057653 ENTREZGENE
  ENSMUST00000057653.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.200.10 UniProtKB/Swiss-Prot
InterPro CA_dom UniProtKB/Swiss-Prot
  CA_dom_sf UniProtKB/Swiss-Prot
  Carbonic_anhydrase_a-class UniProtKB/Swiss-Prot
  Carbonic_anhydrase_a-class_CS UniProtKB/Swiss-Prot
KEGG Report mmu:12352 UniProtKB/Swiss-Prot
MGD MGI:101946 ENTREZGENE
NCBI Gene 12352 ENTREZGENE
PANTHER CARBONIC ANHYDRASE 5A, MITOCHONDRIAL UniProtKB/Swiss-Prot
  PTHR18952 UniProtKB/Swiss-Prot
Pfam Carb_anhydrase UniProtKB/Swiss-Prot
PhenoGen Car5a PhenoGen
PROSITE ALPHA_CA_1 UniProtKB/Swiss-Prot
  ALPHA_CA_2 UniProtKB/Swiss-Prot
SMART Carb_anhydrase UniProtKB/Swiss-Prot
Superfamily-SCOP SSF51069 UniProtKB/Swiss-Prot
UniProt CAH5A_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE