AVIL (advillin) - Rat Genome Database

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Gene: AVIL (advillin) Homo sapiens
Analyze
Symbol: AVIL
Name: advillin
RGD ID: 731808
HGNC Page HGNC
Description: Enables Arp2/3 complex binding activity and actin filament binding activity. Involved in several processes, including cilium assembly; positive regulation of lamellipodium assembly; and regulation of diacylglycerol biosynthetic process. Located in actin filament; focal adhesion; and lamellipodium. Implicated in nephrotic syndrome type 21.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ADVIL; DKFZp779O1812; DOC6; FLJ12386; MGC133244; NPHS21; p92; pervin
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,797,380 - 57,818,734 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1257,797,376 - 57,818,734 (-)EnsemblGRCh38hg38GRCh38
GRCh371258,191,159 - 58,209,852 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361256,477,710 - 56,496,119 (-)NCBINCBI36hg18NCBI36
Build 341256,477,709 - 56,496,119NCBI
Celera1257,849,081 - 57,867,775 (-)NCBI
Cytogenetic Map12q14.1NCBI
HuRef1255,228,126 - 55,246,820 (-)NCBIHuRef
CHM1_11258,158,950 - 58,177,640 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin cytoskeleton  (IBA,TAS)
actin filament  (IDA)
anchoring junction  (IEA)
axon  (IEA)
cell projection  (IEA,ISS)
cytoplasm  (IBA,IEA)
cytoskeleton  (IEA)
focal adhesion  (IDA,IEA)
lamellipodium  (IDA,IEA)
neuron projection  (IEA,ISS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
1. GOA_HUMAN data from the GO Consortium
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9664034   PMID:11287316   PMID:12034507   PMID:12477932   PMID:14702039   PMID:15096633   PMID:18022635   PMID:20393563   PMID:21873635   PMID:28514442   PMID:29058690   PMID:32651364  
PMID:33961781   PMID:34948433  


Genomics

Comparative Map Data
AVIL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,797,380 - 57,818,734 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1257,797,376 - 57,818,734 (-)EnsemblGRCh38hg38GRCh38
GRCh371258,191,159 - 58,209,852 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361256,477,710 - 56,496,119 (-)NCBINCBI36hg18NCBI36
Build 341256,477,709 - 56,496,119NCBI
Celera1257,849,081 - 57,867,775 (-)NCBI
Cytogenetic Map12q14.1NCBI
HuRef1255,228,126 - 55,246,820 (-)NCBIHuRef
CHM1_11258,158,950 - 58,177,640 (-)NCBICHM1_1
Avil
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910126,835,933 - 126,856,863 (+)NCBIGRCm39mm39
GRCm39 Ensembl10126,836,578 - 126,856,863 (+)Ensembl
GRCm3810127,000,065 - 127,020,994 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,000,709 - 127,020,994 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710126,437,765 - 126,458,050 (+)NCBIGRCm37mm9NCBIm37
MGSCv3610126,403,688 - 126,423,937 (+)NCBImm8
Celera10129,392,671 - 129,412,930 (+)NCBICelera
Cytogenetic Map10D3NCBI
Avil
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2762,825,459 - 62,844,103 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl762,826,025 - 62,844,071 (+)Ensembl
Rnor_6.0770,292,565 - 70,310,588 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,292,565 - 70,310,588 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0770,468,814 - 70,486,801 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera759,970,228 - 59,988,243 (+)NCBICelera
Cytogenetic Map7q22NCBI
Avil
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554585,499,652 - 5,520,137 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554585,499,392 - 5,523,463 (-)NCBIChiLan1.0ChiLan1.0
AVIL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11231,369,872 - 31,389,847 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,369,872 - 31,389,847 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01231,108,569 - 31,129,307 (+)NCBIMhudiblu_PPA_v0panPan3
AVIL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,855,598 - 1,875,156 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,856,162 - 1,872,303 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,918,373 - 1,938,040 (-)NCBI
ROS_Cfam_1.0101,864,836 - 1,884,508 (-)NCBI
ROS_Cfam_1.0 Ensembl101,865,400 - 1,885,212 (-)Ensembl
UMICH_Zoey_3.1101,842,335 - 1,861,999 (-)NCBI
UNSW_CanFamBas_1.0102,084,555 - 2,104,221 (-)NCBI
UU_Cfam_GSD_1.0102,209,248 - 2,228,917 (-)NCBI
Avil
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494556,918,247 - 56,939,582 (+)NCBI
SpeTri2.0NW_0049366461,930,447 - 1,952,069 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AVIL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl523,087,956 - 23,132,465 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1523,087,946 - 23,110,602 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
AVIL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,708,969 - 53,732,219 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,707,566 - 53,728,894 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037192,229,363 - 192,251,841 (+)NCBIVero_WHO_p1.0
Avil
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480210,134,518 - 10,154,274 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH80377  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371258,199,942 - 58,200,171UniSTSGRCh37
Build 361256,486,209 - 56,486,438RGDNCBI36
Celera1257,857,865 - 57,858,094RGD
Cytogenetic Map12q14.1UniSTS
HuRef1255,236,910 - 55,237,139UniSTS
GeneMap99-GB4 RH Map12247.7UniSTS
D12S1197E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371258,198,029 - 58,198,176UniSTSGRCh37
Build 361256,484,296 - 56,484,443RGDNCBI36
Celera1257,855,951 - 57,856,098RGD
Cytogenetic Map12q14.1UniSTS
HuRef1255,234,996 - 55,235,143UniSTS
RH65542  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371258,202,349 - 58,202,496UniSTSGRCh37
Build 361256,488,616 - 56,488,763RGDNCBI36
Celera1257,860,272 - 57,860,419RGD
Cytogenetic Map12q14.1UniSTS
HuRef1255,239,317 - 55,239,464UniSTS
GeneMap99-GB4 RH Map12259.22UniSTS
NCBI RH Map12460.2UniSTS
G20278  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371258,197,993 - 58,198,149UniSTSGRCh37
Build 361256,484,260 - 56,484,416RGDNCBI36
Celera1257,855,915 - 57,856,071RGD
Cytogenetic Map12q14.1UniSTS
HuRef1255,234,960 - 55,235,116UniSTS
A005K05  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371258,197,993 - 58,198,149UniSTSGRCh37
Build 361256,484,260 - 56,484,416RGDNCBI36
Celera1257,855,915 - 57,856,071RGD
Cytogenetic Map12q14.1UniSTS
HuRef1255,234,960 - 55,235,116UniSTS
GeneMap99-GB4 RH Map12257.57UniSTS
NCBI RH Map12459.2UniSTS
RH77844  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371258,210,579 - 58,210,723UniSTSGRCh37
Build 361256,496,846 - 56,496,990RGDNCBI36
Celera1257,868,501 - 57,868,645RGD
Cytogenetic Map12q14.1UniSTS
HuRef1255,247,546 - 55,247,690UniSTS
GeneMap99-GB4 RH Map12259.02UniSTS
NCBI RH Map12459.9UniSTS
WI-13965  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371258,198,040 - 58,198,190UniSTSGRCh37
Build 361256,484,307 - 56,484,457RGDNCBI36
Celera1257,855,962 - 57,856,112RGD
Cytogenetic Map12q14.1UniSTS
HuRef1255,235,007 - 55,235,157UniSTS
GeneMap99-GB4 RH Map12257.57UniSTS
Whitehead-RH Map12353.5UniSTS
A006V17  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371258,196,992 - 58,197,111UniSTSGRCh37
Build 361256,483,259 - 56,483,378RGDNCBI36
Celera1257,854,914 - 57,855,033RGD
Cytogenetic Map12q14.1UniSTS
HuRef1255,233,959 - 55,234,078UniSTS
GeneMap99-GB4 RH Map12257.57UniSTS
RH45892  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371258,191,306 - 58,191,462UniSTSGRCh37
Build 361256,477,573 - 56,477,729RGDNCBI36
Celera1257,849,228 - 57,849,384RGD
Cytogenetic Map12q14.1UniSTS
HuRef1255,228,273 - 55,228,429UniSTS
GeneMap99-GB4 RH Map12277.56UniSTS
NCBI RH Map12459.1UniSTS
D10S16   No map positions available.
D1S1425  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map6q25.2-q25.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map2p23-p22UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map17q22-q23UniSTS
Cytogenetic Map2p11.1UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map2p12-p11.2UniSTS
Cytogenetic Map3q11.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map1q32.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map18p11.3-p11.2UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map17q22-q23.2UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map2p24UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map12q24.32UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map15q11-q12UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q21.1-q21.2UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map4q31.21UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map10p15-p14UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map15q24-q25UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11q23.1-q23.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map16q24.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic MapXq21.1UniSTS
D10S16  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map2q11.2-q12UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map3p22UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map9p13.3-p12UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map5q21-q22UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.31-q13.33UniSTS
Cytogenetic Map1q24.1UniSTS
Cytogenetic Map7q32.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map1q42.11UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map2q11.2-q12.1UniSTS
Cytogenetic Map3q21.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map4q34UniSTS
Cytogenetic Map2p22-p21UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map1p36.23UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map11p15.3-p15.1UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic MapXp22.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map3q26UniSTS
Cytogenetic Map12p12.1-p11.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic MapXq23UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map5p15.1UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map17qterUniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map20q12-q13.12UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map5q31.2-q34UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map1pter-q31.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map3p23-p21UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map2q24UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p13.1UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map8q21.2UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1p36.1-p34UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map15q21.1-q21.2UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map3p11.1UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic MapXq21UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map15q24.2UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map4q35UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map3p23UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map4p15.3UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map12q12-q13UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map19qterUniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map17pUniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map2p13.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map3q26.2UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2755
Count of miRNA genes:1080
Interacting mature miRNAs:1324
Transcripts:ENST00000257861, ENST00000537081, ENST00000546952, ENST00000548843, ENST00000549548, ENST00000549753, ENST00000549851, ENST00000549994, ENST00000550083, ENST00000550537, ENST00000551248
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 71 176 336 15 181 6 130 140 457 6 111 351 9 35 121
Low 2360 2589 1370 594 1551 445 4206 2023 3100 397 1329 1250 161 1167 2666 2
Below cutoff 6 219 17 13 214 14 19 30 156 15 10 8 1 1 2 1 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_006576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024448800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC025165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC121759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF041449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK022448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC111730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000257861   ⟹   ENSP00000257861
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1257,797,882 - 57,816,471 (-)Ensembl
RefSeq Acc Id: ENST00000546952
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1257,797,376 - 57,800,653 (-)Ensembl
RefSeq Acc Id: ENST00000548843
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1257,806,138 - 57,814,226 (-)Ensembl
RefSeq Acc Id: ENST00000549548
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1257,805,856 - 57,809,179 (-)Ensembl
RefSeq Acc Id: ENST00000549753
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1257,806,132 - 57,807,641 (-)Ensembl
RefSeq Acc Id: ENST00000549851   ⟹   ENSP00000450188
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1257,797,740 - 57,816,058 (-)Ensembl
RefSeq Acc Id: ENST00000549994   ⟹   ENSP00000449239
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1257,797,380 - 57,818,734 (-)Ensembl
RefSeq Acc Id: ENST00000550083
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1257,803,296 - 57,806,489 (-)Ensembl
RefSeq Acc Id: ENST00000550537
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1257,802,183 - 57,808,692 (-)Ensembl
RefSeq Acc Id: ENST00000551248
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1257,797,778 - 57,801,417 (-)Ensembl
RefSeq Acc Id: NM_006576   ⟹   NP_006567
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381257,797,380 - 57,818,734 (-)NCBI
GRCh371258,190,415 - 58,210,193 (-)NCBI
Build 361256,477,710 - 56,496,119 (-)NCBI Archive
Celera1257,849,081 - 57,867,775 (-)RGD
HuRef1255,228,126 - 55,246,820 (-)ENTREZGENE
CHM1_11258,158,950 - 58,177,640 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047428110   ⟹   XP_047284066
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381257,797,380 - 57,818,734 (-)NCBI
RefSeq Acc Id: XM_047428111   ⟹   XP_047284067
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381257,797,380 - 57,818,734 (-)NCBI
RefSeq Acc Id: XM_047428112   ⟹   XP_047284068
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381257,797,380 - 57,818,734 (-)NCBI
RefSeq Acc Id: XM_047428113   ⟹   XP_047284069
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381257,797,380 - 57,818,734 (-)NCBI
RefSeq Acc Id: XM_047428114   ⟹   XP_047284070
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381257,797,380 - 57,818,734 (-)NCBI
RefSeq Acc Id: XM_047428115   ⟹   XP_047284071
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381257,802,954 - 57,818,734 (-)NCBI
RefSeq Acc Id: XM_047428116   ⟹   XP_047284072
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381257,797,380 - 57,809,725 (-)NCBI
RefSeq Acc Id: XM_047428117   ⟹   XP_047284073
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381257,797,380 - 57,810,410 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_006567   ⟸   NM_006576
- UniProtKB: O75366 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000257861   ⟸   ENST00000257861
RefSeq Acc Id: ENSP00000449239   ⟸   ENST00000549994
RefSeq Acc Id: ENSP00000450188   ⟸   ENST00000549851
RefSeq Acc Id: XP_047284066   ⟸   XM_047428110
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047284070   ⟸   XM_047428114
- Peptide Label: isoform X3
RefSeq Acc Id: XP_047284069   ⟸   XM_047428113
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047284068   ⟸   XM_047428112
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047284067   ⟸   XM_047428111
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047284073   ⟸   XM_047428117
- Peptide Label: isoform X6
RefSeq Acc Id: XP_047284072   ⟸   XM_047428116
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047284071   ⟸   XM_047428115
- Peptide Label: isoform X4
Protein Domains
Gelsolin-like   HP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O75366-F1-model_v2 AlphaFold O75366 1-819 view protein structure

Promoters
RGD ID:6789690
Promoter ID:HG_KWN:16013
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:NB4
Transcripts:NM_006576,   UC009ZQE.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361256,496,801 - 56,497,301 (-)MPROMDB
RGD ID:7224621
Promoter ID:EPDNEW_H18056
Type:initiation region
Name:AVIL_1
Description:advillin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381257,818,734 - 57,818,794EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q13.3-14.2(chr12:57013355-63042498)x1 copy number loss See cases [RCV000052813] Chr12:57013355..63042498 [GRCh38]
Chr12:57407139..63436278 [GRCh37]
Chr12:55693406..61722545 [NCBI36]
Chr12:12q13.3-14.2		 pathogenic
GRCh38/hg38 12q13.3-14.1(chr12:57041158-60273934)x1 copy number loss See cases [RCV000052814] Chr12:57041158..60273934 [GRCh38]
Chr12:57434942..60667715 [GRCh37]
Chr12:55721209..58953982 [NCBI36]
Chr12:12q13.3-14.1		 pathogenic
NM_006576.4(AVIL):c.610A>G (p.Lys204Glu) single nucleotide variant Nephrotic syndrome, type 21 [RCV001553950]|not provided [RCV001707908] Chr12:57810500 [GRCh38]
Chr12:58204283 [GRCh37]
Chr12:12q14.1		 benign
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic|likely pathogenic
NM_005726.6(TSFM):c.*958C>G single nucleotide variant Fatal mitochondrial disease due to combined oxidative phosphorylation defect type 3 [RCV000273628] Chr12:57797541 [GRCh38]
Chr12:58191324 [GRCh37]
Chr12:12q14.1		 benign|uncertain significance
NM_005726.6(TSFM):c.*895A>G single nucleotide variant Fatal mitochondrial disease due to combined oxidative phosphorylation defect type 3 [RCV000371106] Chr12:57797478 [GRCh38]
Chr12:58191261 [GRCh37]
Chr12:12q14.1		 uncertain significance
NM_005726.6(TSFM):c.*997G>C single nucleotide variant Fatal mitochondrial disease due to combined oxidative phosphorylation defect type 3 [RCV000331011] Chr12:57797580 [GRCh38]
Chr12:58191363 [GRCh37]
Chr12:12q14.1		 benign|uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
NM_006576.4(AVIL):c.939+116T>C single nucleotide variant not provided [RCV001541230] Chr12:57809481 [GRCh38]
Chr12:58203264 [GRCh37]
Chr12:12q14.1		 benign
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
NM_006576.4(AVIL):c.2346+130A>G single nucleotide variant not provided [RCV001610902] Chr12:57799665 [GRCh38]
Chr12:58193448 [GRCh37]
Chr12:12q14.1		 benign
NM_006576.4(AVIL):c.1710G>C (p.Leu570=) single nucleotide variant not provided [RCV000925319] Chr12:57803631 [GRCh38]
Chr12:58197414 [GRCh37]
Chr12:12q14.1		 likely benign
NM_006576.4(AVIL):c.1729G>A (p.Gly577Ser) single nucleotide variant not specified [RCV001280666] Chr12:57803612 [GRCh38]
Chr12:58197395 [GRCh37]
Chr12:12q14.1		 uncertain significance
NM_006576.4(AVIL):c.1476G>A (p.Lys492=) single nucleotide variant not provided [RCV000965898] Chr12:57807346 [GRCh38]
Chr12:58201129 [GRCh37]
Chr12:12q14.1		 benign
GRCh37/hg19 12q13.2-14.1(chr12:55552371-62126304)x3 copy number gain not provided [RCV001006505] Chr12:55552371..62126304 [GRCh37]
Chr12:12q13.2-14.1		 pathogenic
NM_006576.4(AVIL):c.1273C>A (p.Leu425Met) single nucleotide variant Nephrotic syndrome, type 21 [RCV000851543]|Steroid-resistant nephrotic syndrome [RCV000845155] Chr12:57807649 [GRCh38]
Chr12:58201432 [GRCh37]
Chr12:12q14.1		 pathogenic
NM_006576.4(AVIL):c.1337G>A (p.Arg446His) single nucleotide variant Nephrotic syndrome, type 21 [RCV000851546]|Steroid-resistant nephrotic syndrome [RCV000845156] Chr12:57807485 [GRCh38]
Chr12:58201268 [GRCh37]
Chr12:12q14.1		 pathogenic
NM_006576.4(AVIL):c.404G>A (p.Arg135Gln) single nucleotide variant Nephrotic syndrome, type 21 [RCV000851544]|Steroid-resistant nephrotic syndrome [RCV000845157] Chr12:57811062 [GRCh38]
Chr12:58204845 [GRCh37]
Chr12:12q14.1		 pathogenic
NM_006576.4(AVIL):c.1964dup (p.Phe656fs) duplication Nephrotic syndrome, type 21 [RCV000851545]|Steroid-resistant nephrotic syndrome [RCV000845158] Chr12:57802346..57802347 [GRCh38]
Chr12:58196129..58196130 [GRCh37]
Chr12:12q14.1		 pathogenic
GRCh37/hg19 12q13.3-14.1(chr12:57582163-59031979)x1 copy number loss not provided [RCV001006506] Chr12:57582163..59031979 [GRCh37]
Chr12:12q13.3-14.1		 likely pathogenic
NM_005726.6(TSFM):c.*866T>G single nucleotide variant Fatal mitochondrial disease due to combined oxidative phosphorylation defect type 3 [RCV001113715] Chr12:57797449 [GRCh38]
Chr12:58191232 [GRCh37]
Chr12:12q14.1		 uncertain significance
NM_006576.4(AVIL):c.939+3A>T single nucleotide variant not provided [RCV001694810] Chr12:57809594 [GRCh38]
Chr12:58203377 [GRCh37]
Chr12:12q14.1		 benign
NM_006576.4(AVIL):c.36C>T (p.Asn12=) single nucleotide variant not provided [RCV000885556] Chr12:57816005 [GRCh38]
Chr12:58209788 [GRCh37]
Chr12:12q14.1		 benign
NM_006576.4(AVIL):c.964C>T (p.Pro322Ser) single nucleotide variant not provided [RCV000895918] Chr12:57808524 [GRCh38]
Chr12:58202307 [GRCh37]
Chr12:12q14.1		 benign
NM_006576.4(AVIL):c.2152-9T>C single nucleotide variant not provided [RCV000909568] Chr12:57801221 [GRCh38]
Chr12:58195004 [GRCh37]
Chr12:12q14.1		 benign
NM_006576.4(AVIL):c.940-88G>T single nucleotide variant not provided [RCV001662977] Chr12:57808636 [GRCh38]
Chr12:58202419 [GRCh37]
Chr12:12q14.1		 benign
NM_006576.4(AVIL):c.67-155C>T single nucleotide variant not provided [RCV001709907] Chr12:57814381 [GRCh38]
Chr12:58208164 [GRCh37]
Chr12:12q14.1		 benign
NM_006576.4(AVIL):c.1963-316C>T single nucleotide variant Fatal mitochondrial disease due to combined oxidative phosphorylation defect type 3 [RCV001537998]|not provided [RCV001638133] Chr12:57802664 [GRCh38]
Chr12:58196447 [GRCh37]
Chr12:12q14.1		 benign
NM_006576.4(AVIL):c.1976T>C (p.Ile659Thr) single nucleotide variant not provided [RCV001568142] Chr12:57802335 [GRCh38]
Chr12:58196118 [GRCh37]
Chr12:12q14.1		 likely benign
NM_006576.4(AVIL):c.1962+228T>C single nucleotide variant not provided [RCV001650230] Chr12:57803019 [GRCh38]
Chr12:58196802 [GRCh37]
Chr12:12q14.1		 benign
NM_006576.4(AVIL):c.1194+202C>T single nucleotide variant not provided [RCV001679496] Chr12:57807992 [GRCh38]
Chr12:58201775 [GRCh37]
Chr12:12q14.1		 benign
NM_006576.4(AVIL):c.559-97dup duplication not provided [RCV001713654] Chr12:57810647..57810648 [GRCh38]
Chr12:58204430..58204431 [GRCh37]
Chr12:12q14.1		 benign
NM_006576.4(AVIL):c.1963-397C>T single nucleotide variant Fatal mitochondrial disease due to combined oxidative phosphorylation defect type 3 [RCV001537999]|not provided [RCV001597299] Chr12:57802745 [GRCh38]
Chr12:58196528 [GRCh37]
Chr12:12q14.1		 benign
NM_006576.4(AVIL):c.939+26G>A single nucleotide variant not provided [RCV001675111] Chr12:57809571 [GRCh38]
Chr12:58203354 [GRCh37]
Chr12:12q14.1		 benign
NM_006576.4(AVIL):c.2151+142A>G single nucleotide variant not provided [RCV001615983] Chr12:57802018 [GRCh38]
Chr12:58195801 [GRCh37]
Chr12:12q14.1		 benign
NM_006576.4(AVIL):c.2151+170G>A single nucleotide variant not provided [RCV001609974] Chr12:57801990 [GRCh38]
Chr12:58195773 [GRCh37]
Chr12:12q14.1		 benign

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:14188 AgrOrtholog
COSMIC AVIL COSMIC
Ensembl Genes ENSG00000135407 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000257861 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000449239 ENTREZGENE, UniProtKB/TrEMBL
  ENSP00000450188 UniProtKB/TrEMBL
Ensembl Transcript ENST00000257861 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000549851 UniProtKB/TrEMBL
  ENST00000549994 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.950.10 UniProtKB/Swiss-Prot
  3.40.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000135407 GTEx
HGNC ID HGNC:14188 ENTREZGENE
Human Proteome Map AVIL Human Proteome Map
InterPro ADF-H/Gelsolin-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Gelsolin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Gelsolin-like_dom_sf UniProtKB/Swiss-Prot
  Villin/Gelsolin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Villin_headpiece UniProtKB/Swiss-Prot
  Villin_headpiece_dom_sf UniProtKB/Swiss-Prot
KEGG Report hsa:10677 UniProtKB/Swiss-Prot
NCBI Gene 10677 ENTREZGENE
OMIM 613397 OMIM
  618594 OMIM
PANTHER PTHR11977 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Gelsolin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VHP UniProtKB/Swiss-Prot
PharmGKB PA38380 PharmGKB
PRINTS GELSOLIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PS51089 UniProtKB/Swiss-Prot
SMART GEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VHP UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47050 UniProtKB/Swiss-Prot
  SSF82754 UniProtKB/Swiss-Prot
UniProt AVIL_HUMAN UniProtKB/Swiss-Prot
  F8VNY0_HUMAN UniProtKB/TrEMBL
  F8VVU1_HUMAN UniProtKB/TrEMBL
  O75366 ENTREZGENE
UniProt Secondary B2RAU7 UniProtKB/Swiss-Prot
  Q2NKM9 UniProtKB/Swiss-Prot