Gucy2f (guanylate cyclase 2f) - Rat Genome Database

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Gene: Gucy2f (guanylate cyclase 2f) Mus musculus
Analyze
Symbol: Gucy2f
Name: guanylate cyclase 2f
RGD ID: 731766
MGI Page MGI
Description: Predicted to enable identical protein binding activity; peptide receptor activity; and phosphorus-oxygen lyase activity. Involved in detection of light stimulus involved in visual perception. Located in rod photoreceptor outer segment. Is expressed in nervous system and sensory organ. Orthologous to human GUCY2F (guanylate cyclase 2F, retinal).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A930002I06; GC-F; GC2; retinal guanylyl cyclase 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X140,862,282 - 140,980,399 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX140,864,156 - 140,979,927 (-)EnsemblGRCm39 Ensembl
GRCm38X142,079,286 - 142,197,276 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX142,081,160 - 142,196,931 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X138,515,703 - 138,631,474 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X137,327,528 - 137,443,299 (-)NCBIMGSCv36mm8
CeleraX126,078,100 - 126,191,808 (-)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX62.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Photoreceptor signaling: supporting vision across a wide range of light intensities. Arshavsky VY and Burns ME, J Biol Chem. 2012 Jan 13;287(3):1620-6. Epub 2011 Nov 10.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Application of functional genomic technologies in a mouse model of retinal degeneration. Shearstone JR, etal., Genomics. 2005 Mar;85(3):309-21.
Additional References at PubMed
PMID:8838319   PMID:9245514   PMID:9722956   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14681479   PMID:15489334   PMID:16110338   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:17255100   PMID:17954614   PMID:21078983   PMID:21598940   PMID:21677750   PMID:21873635   PMID:22623665   PMID:23082185   PMID:27471269   PMID:29549122  
PMID:31346032  


Genomics

Comparative Map Data
Gucy2f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X140,862,282 - 140,980,399 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX140,864,156 - 140,979,927 (-)EnsemblGRCm39 Ensembl
GRCm38X142,079,286 - 142,197,276 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX142,081,160 - 142,196,931 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X138,515,703 - 138,631,474 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X137,327,528 - 137,443,299 (-)NCBIMGSCv36mm8
CeleraX126,078,100 - 126,191,808 (-)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX62.85NCBI
GUCY2F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X109,372,906 - 109,482,086 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX109,372,906 - 109,482,086 (-)EnsemblGRCh38hg38GRCh38
GRCh37X108,616,135 - 108,725,315 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X108,502,791 - 108,611,941 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X108,422,279 - 108,531,432NCBI
CeleraX109,095,739 - 109,204,892 (-)NCBICelera
Cytogenetic MapXq22.3-q23NCBI
HuRefX98,238,823 - 98,346,954 (-)NCBIHuRef
CHM1_1X108,527,410 - 108,636,553 (-)NCBICHM1_1
T2T-CHM13v2.0X107,820,404 - 107,929,552 (-)NCBIT2T-CHM13v2.0
Gucy2f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X110,507,183 - 110,605,017 (-)NCBIGRCr8
mRatBN7.2X105,710,356 - 105,808,183 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX105,710,356 - 105,808,183 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX107,848,258 - 107,946,084 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X111,347,446 - 111,445,266 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X108,912,156 - 109,010,662 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X113,372,240 - 113,474,210 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX113,372,240 - 113,474,164 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X111,822,417 - 111,920,459 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X36,367,528 - 36,469,112 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X36,420,996 - 36,522,581 (+)NCBI
CeleraX105,123,834 - 105,223,272 (-)NCBICelera
Cytogenetic MapXq33NCBI
Gucy2f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554906,331,247 - 6,437,563 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554906,331,247 - 6,437,563 (+)NCBIChiLan1.0ChiLan1.0
GUCY2F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X108,864,549 - 108,973,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X108,868,153 - 108,977,222 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X98,481,609 - 98,590,680 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X108,952,200 - 109,061,441 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX108,952,200 - 109,061,441 (-)Ensemblpanpan1.1panPan2
GUCY2F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X82,648,673 - 82,751,394 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX82,649,601 - 82,751,394 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX68,727,019 - 68,829,988 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X84,298,609 - 84,401,821 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX84,299,418 - 84,401,821 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X81,778,827 - 81,877,294 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X83,469,984 - 83,573,170 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X83,301,901 - 83,400,620 (-)NCBIUU_Cfam_GSD_1.0
Gucy2f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X81,905,232 - 82,004,580 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364995,653,384 - 5,752,732 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GUCY2F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X89,557,952 - 89,653,491 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X105,222,491 - 105,268,453 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GUCY2F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X97,234,564 - 97,349,105 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX97,239,846 - 97,348,853 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606522,440,973 - 22,541,598 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gucy2f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248036,509,114 - 6,683,046 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248036,510,264 - 6,683,046 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gucy2f
2862 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1573
Count of miRNA genes:685
Interacting mature miRNAs:877
Transcripts:ENSMUST00000042530
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
1301276Tswt_mtestis weight (mouse)Not determinedX138376411150789338Mouse

Markers in Region
DXMit240  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X142,179,416 - 142,179,565UniSTSGRCm38
MGSCv37X138,613,959 - 138,614,108UniSTSGRCm37
CeleraX126,174,311 - 126,174,458UniSTS
Cytogenetic MapXF2UniSTS
cM MapX55.0UniSTS
Whitehead_YACX UniSTS
px-37h12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X142,130,677 - 142,130,814UniSTSGRCm38
MGSCv37X138,565,220 - 138,565,357UniSTSGRCm37
CeleraX126,127,775 - 126,127,912UniSTS
Cytogenetic MapXF2UniSTS
cM MapX61.0UniSTS
Gucy2f  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXF2UniSTS
cM MapX61.0UniSTS
Gucy2f  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXF2UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000042530   ⟹   ENSMUSP00000044521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX140,864,156 - 140,979,927 (-)Ensembl
GRCm38.p6 EnsemblX142,081,160 - 142,196,931 (-)Ensembl
RefSeq Acc Id: NM_001007576   ⟹   NP_001007577
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X140,862,285 - 140,979,932 (-)NCBI
GRCm38X142,079,289 - 142,196,936 (-)NCBI
MGSCv37X138,515,703 - 138,631,474 (-)RGD
CeleraX126,076,229 - 126,191,813 (-)ENTREZGENE
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006528841   ⟹   XP_006528904
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X140,862,282 - 140,980,399 (-)NCBI
GRCm38X142,079,286 - 142,197,276 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161965   ⟹   XP_036017858
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X140,862,282 - 140,980,106 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161966   ⟹   XP_036017859
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X140,862,282 - 140,980,399 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161967   ⟹   XP_036017860
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X140,895,440 - 140,980,399 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001007577   ⟸   NM_001007576
- Peptide Label: precursor
- UniProtKB: Q8BLL8 (UniProtKB/Swiss-Prot),   Q5SDA5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006528904   ⟸   XM_006528841
- Peptide Label: isoform X1
- UniProtKB: Q8BLL8 (UniProtKB/Swiss-Prot),   Q5SDA5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000044521   ⟸   ENSMUST00000042530
RefSeq Acc Id: XP_036017859   ⟸   XM_036161966
- Peptide Label: isoform X1
- UniProtKB: Q5SDA5 (UniProtKB/Swiss-Prot),   Q8BLL8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036017858   ⟸   XM_036161965
- Peptide Label: isoform X1
- UniProtKB: Q5SDA5 (UniProtKB/Swiss-Prot),   Q8BLL8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036017860   ⟸   XM_036161967
- Peptide Label: isoform X2
Protein Domains
Guanylate cyclase   Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SDA5-F1-model_v2 AlphaFold Q5SDA5 1-1108 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105119 AgrOrtholog
Ensembl Genes ENSMUSG00000042282 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000042530 ENTREZGENE
  ENSMUST00000042530.4 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.1230 UniProtKB/Swiss-Prot
  3.40.50.2300 UniProtKB/Swiss-Prot
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot
InterPro A/G_cyclase UniProtKB/Swiss-Prot
  A/G_cyclase_CS UniProtKB/Swiss-Prot
  ANF_lig-bd_rcpt UniProtKB/Swiss-Prot
  Kinase-like_dom_sf UniProtKB/Swiss-Prot
  Nucleotide_cyclase UniProtKB/Swiss-Prot
  Peripla_BP_I UniProtKB/Swiss-Prot
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/Swiss-Prot
KEGG Report mmu:245650 UniProtKB/Swiss-Prot
MGD MGI:105119 ENTREZGENE
NCBI Gene 245650 ENTREZGENE
PANTHER GUANYLYL CYCLASE UniProtKB/Swiss-Prot
  PTHR11920:SF349 UniProtKB/Swiss-Prot
Pfam ANF_receptor UniProtKB/Swiss-Prot
  Guanylate_cyc UniProtKB/Swiss-Prot
  Pkinase_Tyr UniProtKB/Swiss-Prot
PhenoGen Gucy2f PhenoGen
PROSITE GUANYLATE_CYCLASE_1 UniProtKB/Swiss-Prot
  GUANYLATE_CYCLASE_2 UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot
SMART CYCc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53822 UniProtKB/Swiss-Prot
  SSF55073 UniProtKB/Swiss-Prot
  SSF56112 UniProtKB/Swiss-Prot
UniProt GUC2F_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8BLL8 ENTREZGENE
UniProt Secondary Q8BLL8 UniProtKB/Swiss-Prot