Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | neovascular inflammatory vitreoretinopathy | | ISO | CAPN5 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | neovascular inflammatory vitreoretinopathy | | ISO | CAPN5 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | Genomic organization of mouse Capn5 and Capn6 genes confirms that they are a distinct calpain subfamily. | Matena K, etal., Genomics 1998 Feb 15;48(1):117-20. |
2. | MGDs mouse GO annotations | MGD data from the GO Consortium |
3. | MGD IEA | MGD IEA |
4. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
5. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
6. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
7. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
8. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:9339374 | PMID:9396712 | PMID:9473662 | PMID:10349636 | PMID:10559499 | PMID:10964513 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12477932 | PMID:12819125 |
PMID:14531791 | PMID:14610273 | PMID:14749380 | PMID:14981075 | PMID:15489334 | PMID:16141072 | PMID:16141073 | PMID:16602821 | PMID:17967808 | PMID:18799693 | PMID:21873635 | PMID:24381307 |
PMID:24838245 | PMID:25994508 | PMID:26073538 | PMID:27152965 | PMID:29157313 | PMID:31164142 | PMID:31403230 | PMID:32325033 | PMID:33607190 | PMID:37949151 |
Capn5 (Mus musculus - house mouse) |
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CAPN5 (Homo sapiens - human) |
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Capn5 (Rattus norvegicus - Norway rat) |
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Capn5 (Chinchilla lanigera - long-tailed chinchilla) |
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CAPN5 (Pan paniscus - bonobo/pygmy chimpanzee) |
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CAPN5 (Canis lupus familiaris - dog) |
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Capn5 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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CAPN5 (Sus scrofa - pig) |
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CAPN5 (Chlorocebus sabaeus - green monkey) |
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Capn5 (Heterocephalus glaber - naked mole-rat) |
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Variants in Capn5
1848 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
Capn5 |
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UniSTS:235711 |
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U85020 |
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D1Mgh19 |
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Omp |
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D17S802 |
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Capn5 |
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Capn5 |
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RefSeq Transcripts | NM_001301250 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_007602 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006507275 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030242034 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030242035 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030242036 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030242037 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030242038 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | A91669 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AC119880 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AI049109 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK139476 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK155179 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK164293 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK170034 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC014767 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BQ176356 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BY794575 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466531 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
U85020 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
Y10656 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000040971 ⟹ ENSMUSP00000048183 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000107112 ⟹ ENSMUSP00000102729 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000129430 ⟹ ENSMUSP00000121200 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000134638 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000155056 ⟹ ENSMUSP00000116697 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001301250 ⟹ NP_001288179 | ||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_007602 ⟹ NP_031628 | ||||||||||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006507275 ⟹ XP_006507338 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030242034 ⟹ XP_030097894 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030242035 ⟹ XP_030097895 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030242036 ⟹ XP_030097896 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030242037 ⟹ XP_030097897 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030242038 ⟹ XP_030097898 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001288179 | (Get FASTA) | NCBI Sequence Viewer |
NP_031628 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006507338 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030097894 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030097895 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030097896 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030097897 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030097898 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAD00559 | (Get FASTA) | NCBI Sequence Viewer |
AAH14767 | (Get FASTA) | NCBI Sequence Viewer | |
BAE24027 | (Get FASTA) | NCBI Sequence Viewer | |
BAE33097 | (Get FASTA) | NCBI Sequence Viewer | |
BAE37722 | (Get FASTA) | NCBI Sequence Viewer | |
BAE41522 | (Get FASTA) | NCBI Sequence Viewer | |
CAA71666 | (Get FASTA) | NCBI Sequence Viewer | |
CAB69426 | (Get FASTA) | NCBI Sequence Viewer | |
EDL16330 | (Get FASTA) | NCBI Sequence Viewer | |
EDL16331 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000048183 | ||
ENSMUSP00000048183.8 | |||
ENSMUSP00000102729 | |||
ENSMUSP00000102729.2 | |||
ENSMUSP00000116697.2 | |||
ENSMUSP00000121200.2 | |||
GenBank Protein | O08688 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_031628 ⟸ NM_007602 |
- UniProtKB: | Q91YU0 (UniProtKB/Swiss-Prot), O08688 (UniProtKB/Swiss-Prot), Q3TPL4 (UniProtKB/TrEMBL), Q3U2P3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006507338 ⟸ XM_006507275 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q3U2P3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001288179 ⟸ NM_001301250 |
- UniProtKB: | Q91YU0 (UniProtKB/Swiss-Prot), O08688 (UniProtKB/Swiss-Prot), Q3TPL4 (UniProtKB/TrEMBL), Q3U2P3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_030097894 ⟸ XM_030242034 |
- Peptide Label: | isoform X2 |
- UniProtKB: | O08688 (UniProtKB/Swiss-Prot), Q91YU0 (UniProtKB/Swiss-Prot), Q3TPL4 (UniProtKB/TrEMBL), Q3U2P3 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_030097895 ⟸ XM_030242035 |
- Peptide Label: | isoform X2 |
- UniProtKB: | O08688 (UniProtKB/Swiss-Prot), Q91YU0 (UniProtKB/Swiss-Prot), Q3TPL4 (UniProtKB/TrEMBL), Q3U2P3 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_030097898 ⟸ XM_030242038 |
- Peptide Label: | isoform X2 |
- UniProtKB: | O08688 (UniProtKB/Swiss-Prot), Q91YU0 (UniProtKB/Swiss-Prot), Q3TPL4 (UniProtKB/TrEMBL), Q3U2P3 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_030097896 ⟸ XM_030242036 |
- Peptide Label: | isoform X2 |
- UniProtKB: | O08688 (UniProtKB/Swiss-Prot), Q91YU0 (UniProtKB/Swiss-Prot), Q3TPL4 (UniProtKB/TrEMBL), Q3U2P3 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_030097897 ⟸ XM_030242037 |
- Peptide Label: | isoform X2 |
- UniProtKB: | O08688 (UniProtKB/Swiss-Prot), Q91YU0 (UniProtKB/Swiss-Prot), Q3TPL4 (UniProtKB/TrEMBL), Q3U2P3 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | ENSMUSP00000048183 ⟸ ENSMUST00000040971 |
RefSeq Acc Id: | ENSMUSP00000102729 ⟸ ENSMUST00000107112 |
RefSeq Acc Id: | ENSMUSP00000121200 ⟸ ENSMUST00000129430 |
RefSeq Acc Id: | ENSMUSP00000116697 ⟸ ENSMUST00000155056 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-O08688-F1-model_v2 | AlphaFold | O08688 | 1-640 | view protein structure |
RGD ID: | 8664837 | ||||||||
Promoter ID: | EPDNEW_M10450 | ||||||||
Type: | initiation region | ||||||||
Name: | Capn5_1 | ||||||||
Description: | Mus musculus calpain 5 , transcript variant 1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 6840766 | ||||||||
Promoter ID: | MM_KWN:51628 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Kidney, Spleen | ||||||||
Transcripts: | OTTMUST00000053966, OTTMUST00000053967 | ||||||||
Position: |
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RGD ID: | 6840764 | ||||||||
Promoter ID: | MM_KWN:51629 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Lung, MEF_B4, MEF_B6, Spleen | ||||||||
Transcripts: | OTTMUST00000053964 | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1100859 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000035547 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000040971 | ENTREZGENE |
ENSMUST00000040971.14 | UniProtKB/Swiss-Prot | |
ENSMUST00000107112 | ENTREZGENE | |
ENSMUST00000107112.2 | UniProtKB/Swiss-Prot | |
ENSMUST00000129430.2 | UniProtKB/TrEMBL | |
ENSMUST00000155056.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 2.60.120.380 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
2.60.40.150 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Cysteine proteinases | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | C2_Calpain | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
C2_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
C2_domain_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
C2_III | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Calpain_cysteine_protease | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Calpain_domain_III | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Calpain_III | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Calpain_III_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Papain-like_cys_pep_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pept_cys_AS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Peptidase_C2_calpain_cat | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:12337 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGD | MGI:1100859 | ENTREZGENE |
NCBI Gene | 12337 | ENTREZGENE |
PANTHER | CALPAIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
CALPAIN-5 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Calpain_III | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Peptidase_C2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PF00168 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Capn5 | PhenoGen |
PRINTS | CALPAIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | CALPAIN_CAT | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PS50004 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
THIOL_PROTEASE_CYS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | calpain_III | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
CysPc | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SM00239 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF49562 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF49758 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SSF54001 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | CAN5_MOUSE | UniProtKB/Swiss-Prot |
D3YU84_MOUSE | UniProtKB/TrEMBL | |
D3Z432_MOUSE | UniProtKB/TrEMBL | |
O08688 | ENTREZGENE | |
Q3TDS7_MOUSE | UniProtKB/TrEMBL | |
Q3TPL4 | ENTREZGENE, UniProtKB/TrEMBL | |
Q3U2P3 | ENTREZGENE, UniProtKB/TrEMBL | |
Q3UTF3_MOUSE | UniProtKB/TrEMBL | |
Q91YU0 | ENTREZGENE | |
UniProt Secondary | Q91YU0 | UniProtKB/Swiss-Prot |