Capn5 (calpain 5) - Rat Genome Database

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Gene: Capn5 (calpain 5) Mus musculus
Analyze
Symbol: Capn5
Name: calpain 5
RGD ID: 731759
MGI Page MGI
Description: Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Located in synapse. Is expressed in several structures, including alimentary system; brain; genitourinary system; immune system; and spinal cord. Human ortholog(s) of this gene implicated in neovascular inflammatory vitreoretinopathy. Orthologous to human CAPN5 (calpain 5).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: calpain-5; nCL-3; new calpain 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39797,770,766 - 97,828,148 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl797,770,766 - 97,827,481 (-)EnsemblGRCm39 Ensembl
GRCm38798,121,559 - 98,178,946 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl798,121,559 - 98,178,274 (-)EnsemblGRCm38mm10GRCm38
MGSCv377105,270,075 - 105,326,703 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36797,996,757 - 98,053,385 (-)NCBIMGSCv36mm8
Celera798,442,279 - 98,499,525 (-)NCBICelera
Cytogenetic Map7E1NCBI
cM Map753.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3-chloropropane-1,2-diol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
CGP 52608  (ISO)
chlordecone  (EXP)
cisplatin  (ISO)
clothianidin  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP)
diethylstilbestrol  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (ISO)
fenthion  (EXP)
fipronil  (ISO)
flavonoids  (ISO)
folic acid  (EXP)
genistein  (EXP)
hypochlorous acid  (EXP)
iron dichloride  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
manganese(II) chloride  (ISO)
methidathion  (EXP)
mifepristone  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenytoin  (ISO)
pirinixic acid  (EXP,ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (EXP)
tetrachloromethane  (EXP)
thimerosal  (ISO)
triptonide  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell surface  (ISO)
cytoplasm  (IBA)
synapse  (IDA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Genomic organization of mouse Capn5 and Capn6 genes confirms that they are a distinct calpain subfamily. Matena K, etal., Genomics 1998 Feb 15;48(1):117-20.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9339374   PMID:9396712   PMID:9473662   PMID:10349636   PMID:10559499   PMID:10964513   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12819125  
PMID:14531791   PMID:14610273   PMID:14749380   PMID:14981075   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17967808   PMID:18799693   PMID:21873635   PMID:24381307  
PMID:24838245   PMID:25994508   PMID:26073538   PMID:27152965   PMID:29157313   PMID:31164142   PMID:31403230   PMID:32325033   PMID:33607190   PMID:37949151  


Genomics

Comparative Map Data
Capn5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39797,770,766 - 97,828,148 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl797,770,766 - 97,827,481 (-)EnsemblGRCm39 Ensembl
GRCm38798,121,559 - 98,178,946 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl798,121,559 - 98,178,274 (-)EnsemblGRCm38mm10GRCm38
MGSCv377105,270,075 - 105,326,703 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36797,996,757 - 98,053,385 (-)NCBIMGSCv36mm8
Celera798,442,279 - 98,499,525 (-)NCBICelera
Cytogenetic Map7E1NCBI
cM Map753.57NCBI
CAPN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381177,066,971 - 77,126,155 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1177,066,961 - 77,126,155 (+)EnsemblGRCh38hg38GRCh38
GRCh371176,778,018 - 76,837,201 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361176,455,640 - 76,514,849 (+)NCBINCBI36Build 36hg18NCBI36
Build 341176,455,658 - 76,514,844NCBI
Celera1174,085,463 - 74,144,685 (+)NCBICelera
Cytogenetic Map11q13.5NCBI
HuRef1173,075,693 - 73,134,573 (+)NCBIHuRef
CHM1_11176,661,081 - 76,720,452 (+)NCBICHM1_1
T2T-CHM13v2.01176,997,312 - 77,056,732 (+)NCBIT2T-CHM13v2.0
Capn5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81161,827,474 - 161,884,142 (-)NCBIGRCr8
mRatBN7.21152,416,252 - 152,472,923 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1152,416,252 - 152,472,923 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1160,403,310 - 160,459,975 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01167,583,490 - 167,640,155 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01160,457,009 - 160,513,680 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01163,073,134 - 163,129,736 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1163,073,124 - 163,129,641 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,278,330 - 169,336,574 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41155,366,678 - 155,421,183 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11155,445,083 - 155,499,584 (-)NCBI
Celera1150,507,123 - 150,563,735 (-)NCBICelera
Cytogenetic Map1q32NCBI
Capn5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541414,651,207 - 14,706,887 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541414,652,578 - 14,706,833 (-)NCBIChiLan1.0ChiLan1.0
CAPN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2977,986,781 - 78,043,703 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11179,034,987 - 79,091,265 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01172,118,036 - 72,174,920 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11175,778,879 - 75,817,832 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1175,778,879 - 75,817,827 (+)Ensemblpanpan1.1panPan2
CAPN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12121,626,090 - 21,678,545 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2121,627,791 - 21,678,880 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2121,453,573 - 21,506,018 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02121,825,703 - 21,878,142 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2121,825,714 - 21,876,967 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12121,601,212 - 21,653,579 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02121,817,385 - 21,869,821 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02121,741,079 - 21,793,561 (-)NCBIUU_Cfam_GSD_1.0
Capn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494764,093,284 - 64,148,772 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364985,692,867 - 5,748,416 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364985,692,910 - 5,747,329 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAPN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl911,207,636 - 11,246,711 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1911,194,302 - 11,246,713 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2912,288,762 - 12,341,062 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAPN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1168,276,310 - 68,334,254 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl168,293,739 - 68,334,250 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604357,441,383 - 57,499,094 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Capn5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624863148,889 - 202,952 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624863148,941 - 202,853 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Capn5
1848 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2060
Count of miRNA genes:724
Interacting mature miRNAs:927
Transcripts:ENSMUST00000040971, ENSMUST00000107112, ENSMUST00000129430, ENSMUST00000134638, ENSMUST00000155056
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
27226792Feml7_mfemur length 7, 5 week (mouse)78614920898949207Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)787849208108099207Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
13464255Ifvrq2_minfluenza virus resistance QTL 2 (mouse)792500698106455693Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse

Markers in Region
Capn5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv377105,279,755 - 105,280,214UniSTSGRCm37
MGSCv377105,279,843 - 105,280,134UniSTSGRCm37
Celera798,452,271 - 98,452,730UniSTS
Celera798,452,359 - 98,452,650UniSTS
Cytogenetic Map7E2UniSTS
cM Map7 UniSTS
UniSTS:235711  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38798,121,915 - 98,122,003UniSTSGRCm38
MGSCv377105,270,425 - 105,270,513UniSTSGRCm37
Celera798,442,629 - 98,442,717UniSTS
Cytogenetic Map7E2UniSTS
U85020  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38798,121,721 - 98,121,869UniSTSGRCm38
MGSCv377105,270,231 - 105,270,379UniSTSGRCm37
Celera798,442,435 - 98,442,583UniSTS
Cytogenetic Map7E2UniSTS
Whitehead/MRC_RH7994.07UniSTS
D1Mgh19  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38798,146,294 - 98,146,509UniSTSGRCm38
MGSCv377105,294,804 - 105,295,019UniSTSGRCm37
Celera798,467,403 - 98,467,604UniSTS
Cytogenetic Map7E2UniSTS
cM Map748.0UniSTS
Omp  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38798,145,057 - 98,145,172UniSTSGRCm38
MGSCv377105,293,567 - 105,293,682UniSTSGRCm37
Celera798,466,166 - 98,466,281UniSTS
Cytogenetic Map7E2UniSTS
cM Map748.0UniSTS
D17S802  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384143,457,750 - 143,459,074UniSTSGRCm38
GRCm381757,022,053 - 57,023,527UniSTSGRCm38
MGSCv374143,047,653 - 143,048,977UniSTSGRCm37
MGSCv371757,161,476 - 57,162,950UniSTSGRCm37
Celera1761,369,979 - 61,371,453UniSTS
Celera798,461,044 - 98,462,226UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map17DUniSTS
cM Map1736.0UniSTS
Capn5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38798,131,245 - 98,131,704UniSTSGRCm38
MGSCv377105,279,755 - 105,280,214UniSTSGRCm37
Celera798,452,271 - 98,452,730UniSTS
Cytogenetic Map7E2UniSTS
cM Map7 UniSTS
Capn5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38798,131,333 - 98,131,624UniSTSGRCm38
MGSCv377105,279,843 - 105,280,134UniSTSGRCm37
Celera798,452,359 - 98,452,650UniSTS
Cytogenetic Map7E2UniSTS
cM Map7 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001301250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide A91669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC119880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI049109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ176356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY794575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U85020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y10656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000040971   ⟹   ENSMUSP00000048183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl797,770,766 - 97,827,481 (-)Ensembl
GRCm38.p6 Ensembl798,121,559 - 98,178,274 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107112   ⟹   ENSMUSP00000102729
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl797,772,868 - 97,811,549 (-)Ensembl
GRCm38.p6 Ensembl798,123,661 - 98,162,342 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129430   ⟹   ENSMUSP00000121200
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl797,811,205 - 97,814,648 (-)Ensembl
GRCm38.p6 Ensembl798,161,998 - 98,165,441 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134638
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl797,794,723 - 97,811,417 (-)Ensembl
GRCm38.p6 Ensembl798,145,516 - 98,162,210 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155056   ⟹   ENSMUSP00000116697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl797,811,188 - 97,814,169 (-)Ensembl
GRCm38.p6 Ensembl798,161,981 - 98,164,962 (-)Ensembl
RefSeq Acc Id: NM_001301250   ⟹   NP_001288179
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,770,766 - 97,811,549 (-)NCBI
GRCm38798,121,559 - 98,162,342 (-)NCBI
Celera798,442,273 - 98,499,606 (-)NCBI
Sequence:
RefSeq Acc Id: NM_007602   ⟹   NP_031628
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,770,766 - 97,827,481 (-)NCBI
GRCm38798,121,559 - 98,178,274 (-)NCBI
MGSCv377105,270,075 - 105,326,703 (-)RGD
Celera798,442,273 - 98,499,606 (-)NCBI
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006507275   ⟹   XP_006507338
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,770,770 - 97,814,019 (-)NCBI
GRCm38798,121,563 - 98,164,835 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242034   ⟹   XP_030097894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,770,770 - 97,828,148 (-)NCBI
GRCm38798,121,563 - 98,178,946 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242035   ⟹   XP_030097895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,770,770 - 97,827,754 (-)NCBI
GRCm38798,121,563 - 98,178,547 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242036   ⟹   XP_030097896
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,770,770 - 97,814,643 (-)NCBI
GRCm38798,121,563 - 98,165,436 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242037   ⟹   XP_030097897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,770,770 - 97,813,774 (-)NCBI
GRCm38798,121,563 - 98,164,573 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242038   ⟹   XP_030097898
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39797,770,770 - 97,825,692 (-)NCBI
GRCm38798,121,563 - 98,176,486 (-)NCBI
Sequence:
RefSeq Acc Id: NP_031628   ⟸   NM_007602
- UniProtKB: Q91YU0 (UniProtKB/Swiss-Prot),   O08688 (UniProtKB/Swiss-Prot),   Q3TPL4 (UniProtKB/TrEMBL),   Q3U2P3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507338   ⟸   XM_006507275
- Peptide Label: isoform X1
- UniProtKB: Q3U2P3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001288179   ⟸   NM_001301250
- UniProtKB: Q91YU0 (UniProtKB/Swiss-Prot),   O08688 (UniProtKB/Swiss-Prot),   Q3TPL4 (UniProtKB/TrEMBL),   Q3U2P3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030097894   ⟸   XM_030242034
- Peptide Label: isoform X2
- UniProtKB: O08688 (UniProtKB/Swiss-Prot),   Q91YU0 (UniProtKB/Swiss-Prot),   Q3TPL4 (UniProtKB/TrEMBL),   Q3U2P3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030097895   ⟸   XM_030242035
- Peptide Label: isoform X2
- UniProtKB: O08688 (UniProtKB/Swiss-Prot),   Q91YU0 (UniProtKB/Swiss-Prot),   Q3TPL4 (UniProtKB/TrEMBL),   Q3U2P3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030097898   ⟸   XM_030242038
- Peptide Label: isoform X2
- UniProtKB: O08688 (UniProtKB/Swiss-Prot),   Q91YU0 (UniProtKB/Swiss-Prot),   Q3TPL4 (UniProtKB/TrEMBL),   Q3U2P3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030097896   ⟸   XM_030242036
- Peptide Label: isoform X2
- UniProtKB: O08688 (UniProtKB/Swiss-Prot),   Q91YU0 (UniProtKB/Swiss-Prot),   Q3TPL4 (UniProtKB/TrEMBL),   Q3U2P3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030097897   ⟸   XM_030242037
- Peptide Label: isoform X2
- UniProtKB: O08688 (UniProtKB/Swiss-Prot),   Q91YU0 (UniProtKB/Swiss-Prot),   Q3TPL4 (UniProtKB/TrEMBL),   Q3U2P3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000048183   ⟸   ENSMUST00000040971
RefSeq Acc Id: ENSMUSP00000102729   ⟸   ENSMUST00000107112
RefSeq Acc Id: ENSMUSP00000121200   ⟸   ENSMUST00000129430
RefSeq Acc Id: ENSMUSP00000116697   ⟸   ENSMUST00000155056
Protein Domains
C2   Calpain catalytic

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O08688-F1-model_v2 AlphaFold O08688 1-640 view protein structure

Promoters
RGD ID:8664837
Promoter ID:EPDNEW_M10450
Type:initiation region
Name:Capn5_1
Description:Mus musculus calpain 5 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38798,178,189 - 98,178,249EPDNEW
RGD ID:6840766
Promoter ID:MM_KWN:51628
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Spleen
Transcripts:OTTMUST00000053966,   OTTMUST00000053967
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367105,313,584 - 105,314,084 (-)MPROMDB
RGD ID:6840764
Promoter ID:MM_KWN:51629
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000053964
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367105,326,511 - 105,327,062 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1100859 AgrOrtholog
Ensembl Genes ENSMUSG00000035547 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000040971 ENTREZGENE
  ENSMUST00000040971.14 UniProtKB/Swiss-Prot
  ENSMUST00000107112 ENTREZGENE
  ENSMUST00000107112.2 UniProtKB/Swiss-Prot
  ENSMUST00000129430.2 UniProtKB/TrEMBL
  ENSMUST00000155056.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.380 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cysteine proteinases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_Calpain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_III UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calpain_cysteine_protease UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calpain_domain_III UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calpain_III UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calpain_III_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_cys_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C2_calpain_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12337 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1100859 ENTREZGENE
NCBI Gene 12337 ENTREZGENE
PANTHER CALPAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALPAIN-5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Calpain_III UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Capn5 PhenoGen
PRINTS CALPAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CALPAIN_CAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  THIOL_PROTEASE_CYS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART calpain_III UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CysPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49758 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54001 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CAN5_MOUSE UniProtKB/Swiss-Prot
  D3YU84_MOUSE UniProtKB/TrEMBL
  D3Z432_MOUSE UniProtKB/TrEMBL
  O08688 ENTREZGENE
  Q3TDS7_MOUSE UniProtKB/TrEMBL
  Q3TPL4 ENTREZGENE, UniProtKB/TrEMBL
  Q3U2P3 ENTREZGENE, UniProtKB/TrEMBL
  Q3UTF3_MOUSE UniProtKB/TrEMBL
  Q91YU0 ENTREZGENE
UniProt Secondary Q91YU0 UniProtKB/Swiss-Prot