Rnf103 (ring finger protein 103) - Rat Genome Database

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Gene: Rnf103 (ring finger protein 103) Mus musculus
Analyze
Symbol: Rnf103
Name: ring finger protein 103
RGD ID: 731597
MGI Page MGI
Description: Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in ERAD pathway and protein ubiquitination. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum. Is expressed in central nervous system; early conceptus; and genitourinary system. Orthologous to human RNF103 (ring finger protein 103).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AW146237; AW212918; E3 ubiquitin-protein ligase RNF103; kf-1; mKF-1; RING-type E3 ubiquitin transferase RNF103; zfp-103; Zfp10; Zfp103; zinc finger protein 103
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39671,470,828 - 71,487,864 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl671,470,878 - 71,487,865 (+)EnsemblGRCm39 Ensembl
GRCm38671,493,844 - 71,510,880 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl671,493,894 - 71,510,881 (+)EnsemblGRCm38mm10GRCm38
MGSCv37671,443,888 - 71,460,875 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36671,423,403 - 71,440,390 (+)NCBIMGSCv36mm8
Celera673,573,253 - 73,590,240 (+)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
ERAD pathway  (IBA,ISO)
protein ubiquitination  (IBA,ISO)

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Identification of a novel gene with RING-H2 finger motif induced after chronic antidepressant treatment in rat brain. Yamada M, etal., Biochem Biophys Res Commun 2000 Nov 11;278(1):150-7.
Additional References at PubMed
PMID:8889548   PMID:9070305   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15282163   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:18287559   PMID:18958194   PMID:19753093   PMID:21267068   PMID:21455683   PMID:21677750   PMID:21873635   PMID:22988430   PMID:32325033  


Genomics

Comparative Map Data
Rnf103
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39671,470,828 - 71,487,864 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl671,470,878 - 71,487,865 (+)EnsemblGRCm39 Ensembl
GRCm38671,493,844 - 71,510,880 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl671,493,894 - 71,510,881 (+)EnsemblGRCm38mm10GRCm38
MGSCv37671,443,888 - 71,460,875 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36671,423,403 - 71,440,390 (+)NCBIMGSCv36mm8
Celera673,573,253 - 73,590,240 (+)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.16NCBI
RNF103
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38286,603,393 - 86,623,877 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl286,603,398 - 86,623,866 (-)EnsemblGRCh38hg38GRCh38
GRCh37286,830,516 - 86,851,000 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36286,684,027 - 86,704,489 (-)NCBINCBI36Build 36hg18NCBI36
Build 34286,742,174 - 86,762,636NCBI
Celera286,658,407 - 86,678,870 (-)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef286,728,170 - 86,748,085 (-)NCBIHuRef
CHM1_1286,760,437 - 86,780,923 (-)NCBICHM1_1
T2T-CHM13v2.0286,605,396 - 86,625,879 (-)NCBIT2T-CHM13v2.0
Rnf103
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84105,084,762 - 105,100,839 (+)NCBIGRCr8
mRatBN7.24103,526,456 - 103,542,529 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4103,526,502 - 103,555,919 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4108,909,563 - 108,925,537 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04104,684,685 - 104,700,659 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04103,296,471 - 103,312,444 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0499,398,479 - 99,415,193 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl499,398,494 - 99,421,164 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04164,178,074 - 164,194,496 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44104,762,184 - 104,778,157 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14105,005,938 - 105,022,637 (+)NCBI
Celera492,685,410 - 92,701,383 (+)NCBICelera
Cytogenetic Map4q32NCBI
Rnf103
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,097,981 - 1,117,844 (+)EnsemblChiLan1.0
ChiLan1.0 EnsemblNW_0049554241,130,565 - 1,160,887 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,097,981 - 1,161,267 (+)NCBIChiLan1.0ChiLan1.0
RNF103
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21239,755,754 - 39,776,239 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A39,758,516 - 39,779,000 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A86,659,672 - 86,680,154 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RNF103
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11738,549,838 - 38,566,613 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1738,549,828 - 38,566,149 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1738,235,604 - 38,252,356 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01739,282,716 - 39,299,449 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1739,282,705 - 39,299,839 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11738,449,002 - 38,465,752 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01738,485,209 - 38,502,055 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01738,833,202 - 38,849,951 (+)NCBIUU_Cfam_GSD_1.0
Rnf103
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,860,350 - 79,880,798 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936712977,644 - 999,051 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936712977,650 - 997,623 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF103
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl358,161,261 - 58,186,858 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1358,161,087 - 58,183,750 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2360,919,064 - 60,941,736 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF103
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366604591,947,140 - 91,967,856 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf103
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474916,688,389 - 16,708,419 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474916,689,010 - 16,712,673 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnf103
548 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:918
Count of miRNA genes:432
Interacting mature miRNAs:531
Transcripts:ENSMUST00000064637, ENSMUST00000114178, ENSMUST00000114179, ENSMUST00000150069
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64157698575576985Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64209335876093500Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64209335876093500Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64209335876093500Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64209335876093500Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64380374777788506Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64380374777788506Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64380374777788506Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64380374777788506Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64380374777788506Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64380374777788506Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64529099387403016Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4870349075424693Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65115613485156284Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5435041188356155Mouse
15039373Adip28_madiposity 28 (mouse)65628519490285194Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65628519490285194Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65842456692424693Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65851741692517416Mouse
10412119Stv_mstriatal volumne (mouse)Not determined660026991100026967Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66003466394034782Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66346172197461888Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666690851100691013Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670402880104403016Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670402880104403016Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670402880104403016Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7129960586252701Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67129960593441074Mouse

Markers in Region
AW146237  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38671,510,734 - 71,510,813UniSTSGRCm38
MGSCv37671,460,728 - 71,460,807UniSTSGRCm37
Celera673,590,093 - 73,590,172UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.5UniSTS
Whitehead/MRC_RH6715.43UniSTS
Whitehead/MRC_RH6717.5UniSTS
UniSTS:235467  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38671,496,242 - 71,496,455UniSTSGRCm38
MGSCv37671,446,236 - 71,446,449UniSTSGRCm37
Celera673,575,601 - 73,575,814UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.5UniSTS
MARC_24177-24178:1033563974:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38671,509,750 - 71,510,408UniSTSGRCm38
MGSCv37671,459,744 - 71,460,402UniSTSGRCm37
Celera673,589,109 - 73,589,767UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001308303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB012161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI849515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D76445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000064637   ⟹   ENSMUSP00000066324
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,470,878 - 71,487,865 (+)Ensembl
GRCm38.p6 Ensembl671,493,894 - 71,510,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114178   ⟹   ENSMUSP00000109816
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,470,894 - 71,487,865 (+)Ensembl
GRCm38.p6 Ensembl671,493,910 - 71,510,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114179   ⟹   ENSMUSP00000109817
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,470,987 - 71,487,747 (+)Ensembl
GRCm38.p6 Ensembl671,494,003 - 71,510,763 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150069
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,480,870 - 71,484,140 (+)Ensembl
GRCm38.p6 Ensembl671,503,886 - 71,507,156 (+)Ensembl
RefSeq Acc Id: NM_001308303   ⟹   NP_001295232
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,470,894 - 71,487,864 (+)NCBI
GRCm38671,493,877 - 71,510,880 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001410507   ⟹   NP_001397436
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,470,894 - 71,487,864 (+)NCBI
RefSeq Acc Id: NM_001410508   ⟹   NP_001397437
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,470,894 - 71,487,864 (+)NCBI
RefSeq Acc Id: NM_009543   ⟹   NP_033569
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,470,894 - 71,487,864 (+)NCBI
GRCm38671,493,877 - 71,510,880 (+)NCBI
MGSCv37671,443,888 - 71,460,875 (+)RGD
Celera673,573,253 - 73,590,240 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036166028   ⟹   XP_036021921
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,470,828 - 71,485,164 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036166029   ⟹   XP_036021922
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,470,828 - 71,487,864 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_033569   ⟸   NM_009543
- Peptide Label: isoform 1
- UniProtKB: O08670 (UniProtKB/Swiss-Prot),   B9EHC2 (UniProtKB/Swiss-Prot),   O08883 (UniProtKB/Swiss-Prot),   Q9R1W3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001295232   ⟸   NM_001308303
- Peptide Label: isoform 2
- UniProtKB: Q3TGP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000109817   ⟸   ENSMUST00000114179
RefSeq Acc Id: ENSMUSP00000109816   ⟸   ENSMUST00000114178
RefSeq Acc Id: ENSMUSP00000066324   ⟸   ENSMUST00000064637
RefSeq Acc Id: XP_036021922   ⟸   XM_036166029
- Peptide Label: isoform X2
- UniProtKB: D3Z0Y5 (UniProtKB/TrEMBL),   Q3UYK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036021921   ⟸   XM_036166028
- Peptide Label: isoform X1
- UniProtKB: Q3UYK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397437   ⟸   NM_001410508
- Peptide Label: isoform 2
- UniProtKB: Q3TGP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397436   ⟸   NM_001410507
- Peptide Label: isoform 2
- UniProtKB: Q3TGP6 (UniProtKB/TrEMBL)
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R1W3-F1-model_v2 AlphaFold Q9R1W3 1-683 view protein structure

Promoters
RGD ID:6839862
Promoter ID:MM_KWN:46425
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000114178,   ENSMUST00000114179,   NM_009543,   OTTMUST00000058652
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36671,443,676 - 71,444,707 (+)MPROMDB
RGD ID:6889972
Promoter ID:EPDNEW_M8437
Type:initiation region
Name:Rnf103_1
Description:Mus musculus ring finger protein 103 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8438  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38671,493,910 - 71,493,970EPDNEW
RGD ID:6889974
Promoter ID:EPDNEW_M8438
Type:single initiation site
Name:Rnf103_2
Description:Mus musculus ring finger protein 103 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8437  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38671,504,297 - 71,504,357EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109483 AgrOrtholog
Ensembl Genes ENSMUSG00000052656 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000064637 ENTREZGENE
  ENSMUST00000064637.11 UniProtKB/Swiss-Prot
  ENSMUST00000114178 ENTREZGENE
  ENSMUST00000114178.8 UniProtKB/TrEMBL
  ENSMUST00000114179.3 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro RNF103 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22644 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109483 ENTREZGENE
NCBI Gene 22644 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF103 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15302 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rnf103 PhenoGen
PROSITE ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B9EHC2 ENTREZGENE
  D3Z0Y5 ENTREZGENE, UniProtKB/TrEMBL
  O08670 ENTREZGENE
  O08883 ENTREZGENE
  Q3TGP6 ENTREZGENE, UniProtKB/TrEMBL
  Q3UYK9 ENTREZGENE, UniProtKB/TrEMBL
  Q9R1W3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B9EHC2 UniProtKB/Swiss-Prot
  O08670 UniProtKB/Swiss-Prot
  O08883 UniProtKB/Swiss-Prot