RPL30 (ribosomal protein L30) - Rat Genome Database

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Gene: RPL30 (ribosomal protein L30) Homo sapiens
Analyze
Symbol: RPL30
Name: ribosomal protein L30
RGD ID: 731558
HGNC Page HGNC
Description: Exhibits RNA binding activity. Involved in several processes, including antimicrobial humoral immune response mediated by antimicrobial peptide; cytoplasmic translation; and defense response to Gram-negative bacterium. Localizes to nucleus; postsynaptic density; and ribosome. Implicated in herpes simplex.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: 60S ribosomal protein L30; L30; large ribosomal subunit protein eL30
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Related Pseudogenes: RPL30P1   RPL30P10   RPL30P11   RPL30P12   RPL30P13   RPL30P14   RPL30P15   RPL30P16   RPL30P2   RPL30P3   RPL30P4   RPL30P5   RPL30P6   RPL30P7   RPL30P8   RPL30P9  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl898,024,851 - 98,046,469 (-)EnsemblGRCh38hg38GRCh38
GRCh38898,041,721 - 98,045,545 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37899,053,949 - 99,057,773 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36899,123,118 - 99,126,949 (-)NCBINCBI36hg18NCBI36
Build 34899,123,118 - 99,126,949NCBI
Celera895,239,859 - 95,243,700 (-)NCBI
Cytogenetic Map8q22.2NCBI
HuRef894,257,678 - 94,261,492 (-)NCBIHuRef
CHM1_1899,094,763 - 99,098,650 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1577483   PMID:7821789   PMID:8722009   PMID:9582194   PMID:11875025   PMID:12477932   PMID:12777385   PMID:12962325   PMID:14567916   PMID:14743216   PMID:15019208   PMID:15064750  
PMID:15189156   PMID:15489334   PMID:16341674   PMID:16964243   PMID:16968546   PMID:17342744   PMID:17620599   PMID:18029348   PMID:19738201   PMID:19946888   PMID:19953087   PMID:20458337  
PMID:20554519   PMID:21081503   PMID:21145461   PMID:21151833   PMID:21170055   PMID:21244100   PMID:21280222   PMID:21319273   PMID:21423176   PMID:21832049   PMID:21873635   PMID:21942715  
PMID:21988832   PMID:22139155   PMID:22145905   PMID:22586326   PMID:22623428   PMID:22658674   PMID:22681889   PMID:22720776   PMID:22863883   PMID:22939629   PMID:22944692   PMID:23151878  
PMID:23246001   PMID:23376485   PMID:23398456   PMID:23443559   PMID:23463506   PMID:23979707   PMID:24457600   PMID:24550385   PMID:24625528   PMID:24657165   PMID:24725412   PMID:25437307  
PMID:25670202   PMID:25737280   PMID:25957688   PMID:25963833   PMID:26170170   PMID:26209609   PMID:26344197   PMID:26496610   PMID:26816005   PMID:26831064   PMID:27025967   PMID:27432908  
PMID:27591049   PMID:27684187   PMID:27926873   PMID:27976729   PMID:28302793   PMID:28330616   PMID:28514442   PMID:28515276   PMID:28561026   PMID:28712289   PMID:28902428   PMID:28927264  
PMID:28977666   PMID:29117863   PMID:29128334   PMID:29229926   PMID:29298432   PMID:29395067   PMID:29467282   PMID:29511261   PMID:29568061   PMID:29721183   PMID:29773831   PMID:29802200  
PMID:29845934   PMID:30021884   PMID:30033366   PMID:30209976   PMID:30258100   PMID:30320910   PMID:30320934   PMID:30344098   PMID:30349055   PMID:30463901   PMID:30833792   PMID:30948266  
PMID:30997501   PMID:31006538   PMID:31046837   PMID:31048545   PMID:31059266   PMID:31091453   PMID:31180492   PMID:31239290   PMID:31248990   PMID:31253590   PMID:31365120   PMID:31405213  
PMID:31586073   PMID:31685992   PMID:31722399   PMID:31980649   PMID:32041737   PMID:32129710   PMID:32457219   PMID:32877691  


Genomics

Comparative Map Data
RPL30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl898,024,851 - 98,046,469 (-)EnsemblGRCh38hg38GRCh38
GRCh38898,041,721 - 98,045,545 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37899,053,949 - 99,057,773 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36899,123,118 - 99,126,949 (-)NCBINCBI36hg18NCBI36
Build 34899,123,118 - 99,126,949NCBI
Celera895,239,859 - 95,243,700 (-)NCBI
Cytogenetic Map8q22.2NCBI
HuRef894,257,678 - 94,261,492 (-)NCBIHuRef
CHM1_1899,094,763 - 99,098,650 (-)NCBICHM1_1
Rpl30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391534,440,651 - 34,443,422 (-)NCBIGRCm39mm39
GRCm39 Ensembl1534,440,651 - 34,443,786 (-)Ensembl
GRCm381534,440,505 - 34,443,276 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1534,440,505 - 34,443,640 (-)EnsemblGRCm38mm10GRCm38
MGSCv371534,370,260 - 34,373,031 (-)NCBIGRCm37mm9NCBIm37
MGSCv361534,385,099 - 34,387,811 (-)NCBImm8
Celera1535,068,334 - 35,071,105 (-)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1514.33NCBI
Rpl30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2765,648,470 - 65,651,363 (-)NCBI
Rnor_6.0 Ensembl773,213,581 - 73,216,251 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0773,213,538 - 73,216,431 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0773,381,072 - 73,383,965 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4769,886,763 - 69,889,656 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1769,907,492 - 69,910,386 (-)NCBI
Celera762,749,491 - 62,752,384 (-)NCBICelera
Cytogenetic Map7q22NCBI
Rpl30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541713,764,814 - 13,767,698 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541713,764,814 - 13,767,698 (-)NCBIChiLan1.0ChiLan1.0
RPL30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1896,863,859 - 96,867,732 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl896,863,944 - 96,867,526 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0894,678,823 - 94,682,726 (-)NCBIMhudiblu_PPA_v0panPan3
RPL30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.113301,263 - 304,854 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha13294,878 - 298,456 (-)NCBI
ROS_Cfam_1.013449,652 - 453,252 (-)NCBI
UMICH_Zoey_3.113293,399 - 296,993 (-)NCBI
UNSW_CanFamBas_1.013400,918 - 404,509 (-)NCBI
UU_Cfam_GSD_1.013407,182 - 410,785 (-)NCBI
LOC101963795
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629262,896,430 - 62,896,892 (-)NCBI
SpeTri2.0NW_0049364937,942,669 - 7,943,133 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl438,701,720 - 38,720,780 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1438,702,220 - 38,720,420 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2441,705,621 - 41,709,159 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL30
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1892,958,214 - 92,962,200 (-)NCBI
ChlSab1.1 Ensembl892,957,814 - 92,962,242 (-)Ensembl

Position Markers
G59910  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37899,057,331 - 99,057,544UniSTSGRCh37
Build 36899,126,507 - 99,126,720RGDNCBI36
Celera895,243,258 - 95,243,471RGD
Cytogenetic Map8q22UniSTS
HuRef894,261,005 - 94,261,218UniSTS
TNG Radiation Hybrid Map847063.0UniSTS
D8S1364E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37899,057,202 - 99,057,311UniSTSGRCh37
Build 36899,126,378 - 99,126,487RGDNCBI36
Celera895,243,129 - 95,243,238RGD
Cytogenetic Map8q22UniSTS
HuRef894,260,876 - 94,260,985UniSTS
D8S1959  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37899,057,299 - 99,057,590UniSTSGRCh37
Build 36899,126,475 - 99,126,766RGDNCBI36
Celera895,243,226 - 95,243,517RGD
Cytogenetic Map8q22UniSTS
HuRef894,260,973 - 94,261,264UniSTS
GeneMap99-GB4 RH Map8442.24UniSTS
Whitehead-RH Map8581.1UniSTS
Whitehead-YAC Contig Map8 UniSTS
NCBI RH Map8994.1UniSTS
D8S1655  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371859,072,134 - 59,072,230UniSTSGRCh37
GRCh37332,676,750 - 32,676,846UniSTSGRCh37
Build 36332,651,754 - 32,651,850RGDNCBI36
Celera1855,790,021 - 55,790,117UniSTS
Celera332,613,846 - 32,613,942RGD
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map8q22UniSTS
HuRef1855,782,227 - 55,782,323UniSTS
HuRef332,611,900 - 32,611,996UniSTS
Whitehead-YAC Contig Map8 UniSTS
MARC_1295-1296:991931143:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37332,676,762 - 32,677,056UniSTSGRCh37
GRCh371859,072,146 - 59,072,448UniSTSGRCh37
Build 36332,651,766 - 32,652,060RGDNCBI36
Celera332,613,858 - 32,614,152RGD
Celera1855,790,033 - 55,790,335UniSTS
HuRef1855,782,239 - 55,782,541UniSTS
HuRef332,611,912 - 32,612,206UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5q14.2UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1p35.2UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map3q27.2UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map17q21.2-q21.3UniSTS
Cytogenetic Map5q32-q34UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map3q21.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map8p22-p21UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map12q21.33UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map3q25UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.31-q13.33UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map7q32.2UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map14q31-q32.1UniSTS
Cytogenetic Map1q42.11UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map2q11.2-q12.1UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map20p11.23-p11.21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map9q21.32UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map2q21.3UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map12q24.11UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map10q11.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map7q34-q35UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map6p25.1-p23UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map18q12.1-q21.1UniSTS
Cytogenetic Map12p13.1UniSTS
Cytogenetic Map13q12.1UniSTS
Cytogenetic Map12q15UniSTS
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Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1412
Count of miRNA genes:730
Interacting mature miRNAs:833
Transcripts:ENST00000287038, ENST00000396070, ENST00000517489, ENST00000517805, ENST00000518164, ENST00000518850, ENST00000520998, ENST00000521112, ENST00000521291, ENST00000521534, ENST00000521726, ENST00000522156, ENST00000523172
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 5 3 2 3 49 2 9 3 4 5 178 12 2 1 1 1
Medium 2434 2985 1724 621 1902 463 4348 2191 3730 414 1282 1601 173 1 1203 2788 5 1
Low 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000287038   ⟹   ENSP00000287038
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,041,721 - 98,045,545 (-)Ensembl
RefSeq Acc Id: ENST00000396070   ⟹   ENSP00000379381
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,041,721 - 98,045,544 (-)Ensembl
RefSeq Acc Id: ENST00000517489
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,042,645 - 98,045,550 (-)Ensembl
RefSeq Acc Id: ENST00000517805
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,042,831 - 98,044,132 (-)Ensembl
RefSeq Acc Id: ENST00000518164
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,024,851 - 98,045,548 (-)Ensembl
RefSeq Acc Id: ENST00000518850   ⟹   ENSP00000430556
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,041,721 - 98,045,545 (-)Ensembl
RefSeq Acc Id: ENST00000520998
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,044,433 - 98,045,545 (-)Ensembl
RefSeq Acc Id: ENST00000521112
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,044,868 - 98,045,548 (-)Ensembl
RefSeq Acc Id: ENST00000521291   ⟹   ENSP00000428085
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,041,721 - 98,045,514 (-)Ensembl
RefSeq Acc Id: ENST00000521534
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,041,719 - 98,043,085 (-)Ensembl
RefSeq Acc Id: ENST00000521726   ⟹   ENSP00000429483
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,041,807 - 98,046,469 (-)Ensembl
RefSeq Acc Id: ENST00000522156
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,043,447 - 98,044,241 (-)Ensembl
RefSeq Acc Id: ENST00000523172   ⟹   ENSP00000430506
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,041,800 - 98,045,546 (-)Ensembl
RefSeq Acc Id: NM_000989   ⟹   NP_000980
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38898,041,721 - 98,045,545 (-)NCBI
GRCh37899,053,938 - 99,057,818 (-)ENTREZGENE
Build 36899,123,118 - 99,126,949 (-)NCBI Archive
Celera895,239,859 - 95,243,700 (-)RGD
HuRef894,257,678 - 94,261,492 (-)ENTREZGENE
CHM1_1899,094,763 - 99,098,650 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_000980   ⟸   NM_000989
- UniProtKB: P62888 (UniProtKB/Swiss-Prot),   A0A024R9D3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000430556   ⟸   ENST00000518850
RefSeq Acc Id: ENSP00000428085   ⟸   ENST00000521291
RefSeq Acc Id: ENSP00000429483   ⟸   ENST00000521726
RefSeq Acc Id: ENSP00000287038   ⟸   ENST00000287038
RefSeq Acc Id: ENSP00000430506   ⟸   ENST00000523172
RefSeq Acc Id: ENSP00000379381   ⟸   ENST00000396070
Protein Domains
Ribosomal_L7Ae

Promoters
RGD ID:7213847
Promoter ID:EPDNEW_H12669
Type:initiation region
Name:RPL30_2
Description:ribosomal protein L30
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12670  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38898,045,388 - 98,045,448EPDNEW
RGD ID:7213849
Promoter ID:EPDNEW_H12670
Type:initiation region
Name:RPL30_1
Description:ribosomal protein L30
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12669  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38898,045,545 - 98,045,605EPDNEW
RGD ID:6852956
Promoter ID:EP74297
Type:single initiation site
Name:HS_RPL30_2
Description:Ribosomal protein L30.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:alternative promoter #2 of 2; 5' exon 1; site 2; major promoter.; see alsoEP74296  
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 36899,126,792 - 99,126,852EPD
RGD ID:6806659
Promoter ID:HG_KWN:61772
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000396070,   NM_000989,   UC010MBK.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36899,126,926 - 99,127,922 (-)MPROMDB
RGD ID:6852954
Promoter ID:EP74296
Type:initiation region
Name:HS_RPL30_1
Description:Ribosomal protein L30.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:alternative promoter #1 of 2; 5' exon 1; site 1.; see alsoEP74297  
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 36899,126,949 - 99,127,009EPD

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3 copy number gain See cases [RCV000051206] Chr8:241530..145049449 [GRCh38]
Chr8:191530..146274835 [GRCh37]
Chr8:181530..146245639 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:95606052-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053677]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053677]|See cases [RCV000053677] Chr8:95606052..145054775 [GRCh38]
Chr8:96618280..146280161 [GRCh37]
Chr8:96687456..146250965 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000053602] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:244417-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|See cases [RCV000053604] Chr8:244417..145054775 [GRCh38]
Chr8:194417..146280161 [GRCh37]
Chr8:184417..146250965 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:94682154-145068656)x3 copy number gain See cases [RCV000134353] Chr8:94682154..145068656 [GRCh38]
Chr8:95694382..146294042 [GRCh37]
Chr8:95763558..146264846 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q21.3-24.23(chr8:86300584-137022587)x3 copy number gain See cases [RCV000135621] Chr8:86300584..137022587 [GRCh38]
Chr8:87312813..138034830 [GRCh37]
Chr8:87381929..138104012 [NCBI36]
Chr8:8q21.3-24.23
pathogenic|likely pathogenic
GRCh38/hg38 8q21.3-24.3(chr8:87931152-145068712)x3 copy number gain See cases [RCV000138551] Chr8:87931152..145068712 [GRCh38]
Chr8:88943380..146294098 [GRCh37]
Chr8:89012496..146264902 [NCBI36]
Chr8:8q21.3-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3 copy number gain See cases [RCV000138643] Chr8:241605..145054781 [GRCh38]
Chr8:191605..146280167 [GRCh37]
Chr8:181605..146250971 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:77480050-145068712)x3 copy number gain See cases [RCV000139036] Chr8:77480050..145068712 [GRCh38]
Chr8:78392286..146294098 [GRCh37]
Chr8:78554841..146264902 [NCBI36]
Chr8:8q21.13-24.3
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:97382873-145070385)x3 copy number gain See cases [RCV000140447] Chr8:97382873..145070385 [GRCh38]
Chr8:98395101..146295771 [GRCh37]
Chr8:98464277..146266575 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q11.1-24.3(chr8:46031340-139285494)x3 copy number gain See cases [RCV000139539] Chr8:46031340..139285494 [GRCh38]
Chr8:46942962..140297737 [GRCh37]
Chr8:47062127..140366919 [NCBI36]
Chr8:8q11.1-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3 copy number gain See cases [RCV000141808] Chr8:208048..145070385 [GRCh38]
Chr8:158048..146295771 [GRCh37]
Chr8:148048..146266575 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p21.3-q24.3(chr8:21291522-145070385)x3 copy number gain See cases [RCV000142021] Chr8:21291522..145070385 [GRCh38]
Chr8:21149033..146295771 [GRCh37]
Chr8:21193313..146266575 [NCBI36]
Chr8:8p21.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3 copy number gain See cases [RCV000142858] Chr8:226452..145068712 [GRCh38]
Chr8:176452..146294098 [GRCh37]
Chr8:166452..146264902 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:78614077-145054634)x3 copy number gain See cases [RCV000142597] Chr8:78614077..145054634 [GRCh38]
Chr8:79526312..146280020 [GRCh37]
Chr8:79688867..146250824 [NCBI36]
Chr8:8q21.13-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000148092] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.2-24.3(chr8:85765999-145070385)x3 copy number gain See cases [RCV000143659] Chr8:85765999..145070385 [GRCh38]
Chr8:86778228..146295771 [GRCh37]
Chr8:86863079..146266575 [NCBI36]
Chr8:8q21.2-24.3
pathogenic
GRCh37/hg19 8p12-q24.3(chr8:31936551-146295771)x3 copy number gain not provided [RCV000848192] Chr8:31936551..146295771 [GRCh37]
Chr8:8p12-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158991-146280828)x3 copy number gain See cases [RCV000447507] Chr8:158991..146280828 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q22.1-24.3(chr8:98432250-146222672)x4 copy number gain See cases [RCV000448954] Chr8:98432250..146222672 [GRCh37]
Chr8:8q22.1-24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771) copy number gain See cases [RCV000510234] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q21.3-24.3(chr8:93047482-141355635)x3 copy number gain See cases [RCV000511761] Chr8:93047482..141355635 [GRCh37]
Chr8:8q21.3-24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771)x3 copy number gain See cases [RCV000511095] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q21.2-24.3(chr8:86841154-146295771)x3 copy number gain See cases [RCV000511002] Chr8:86841154..146295771 [GRCh37]
Chr8:8q21.2-24.3
pathogenic
GRCh37/hg19 8q21.2-24.3(chr8:86841228-142689874)x3 copy number gain See cases [RCV000510854] Chr8:86841228..142689874 [GRCh37]
Chr8:8q21.2-24.3
pathogenic
GRCh37/hg19 8p23.1-q24.3(chr8:12490999-146295771)x3 copy number gain See cases [RCV000512169] Chr8:12490999..146295771 [GRCh37]
Chr8:8p23.1-q24.3
pathogenic
GRCh37/hg19 8q21.2-23.3(chr8:86841154-116518125)x3 copy number gain not provided [RCV000683045] Chr8:86841154..116518125 [GRCh37]
Chr8:8q21.2-23.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:164984-146293414)x3 copy number gain not provided [RCV000747254] Chr8:164984..146293414 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:10213-146293414)x3 copy number gain not provided [RCV000747248] Chr8:10213..146293414 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 copy number gain not provided [RCV000848478] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:10333 AgrOrtholog
COSMIC RPL30 COSMIC
Ensembl Genes ENSG00000156482 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000287038 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000379381 UniProtKB/TrEMBL
  ENSP00000428085 UniProtKB/Swiss-Prot
  ENSP00000429483 UniProtKB/TrEMBL
  ENSP00000430506 UniProtKB/TrEMBL
  ENSP00000430556 UniProtKB/TrEMBL
Ensembl Transcript ENST00000287038 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000396070 UniProtKB/TrEMBL
  ENST00000518850 UniProtKB/TrEMBL
  ENST00000521291 UniProtKB/Swiss-Prot
  ENST00000521726 UniProtKB/TrEMBL
  ENST00000523172 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1330.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000156482 GTEx
HGNC ID HGNC:10333 ENTREZGENE
Human Proteome Map RPL30 Human Proteome Map
InterPro L30/L30e/YlxQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L30e-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L30e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L30e_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:6156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 6156 ENTREZGENE
OMIM 180467 OMIM
PANTHER PTHR11449 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11449:SF12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L7Ae UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA34714 PharmGKB
PROSITE RIBOSOMAL_L30E_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIBOSOMAL_L30E_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55315 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A024R9D3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0B4J213_HUMAN UniProtKB/TrEMBL
  A0A0C4DH44_HUMAN UniProtKB/TrEMBL
  E5RI99_HUMAN UniProtKB/TrEMBL
  E5RJH3_HUMAN UniProtKB/TrEMBL
  P62888 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B2R591 UniProtKB/Swiss-Prot
  P04645 UniProtKB/Swiss-Prot
  Q502Z6 UniProtKB/Swiss-Prot