Stx4a (syntaxin 4A (placental)) - Rat Genome Database

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Gene: Stx4a (syntaxin 4A (placental)) Mus musculus
Analyze
Symbol: Stx4a
Name: syntaxin 4A (placental)
RGD ID: 731469
MGI Page MGI
Description: Enables SNARE binding activity. Involved in SNARE complex assembly. Acts upstream of or within cellular response to interferon-gamma. Located in several cellular components, including basolateral plasma membrane; lateral loop; and myelin sheath adaxonal region. Part of SNARE complex. Is expressed in central nervous system; metanephros; and retina. Orthologous to human STX4 (syntaxin 4); PARTICIPATES IN E-cadherin signaling pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; vasopressin signaling pathway via receptor type 2; INTERACTS WITH (S)-nicotine; 1,2-dichloroethane; 1,2-dimethylhydrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Stx; Stx4; Sy; Syn; Syn-4; Syn4; syntaxin-4
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,439,832 - 127,450,160 (+)NCBIGRCm39mm39
GRCm39 Ensembl7127,423,466 - 127,448,191 (+)Ensembl
GRCm387127,840,643 - 127,850,988 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,824,294 - 127,849,019 (+)EnsemblGRCm38mm10GRCm38
MGSCv377134,985,322 - 134,992,493 (+)NCBIGRCm37mm9NCBIm37
MGSCv367127,632,956 - 127,640,127 (+)NCBImm8
Celera7127,676,765 - 127,683,936 (+)NCBICelera
Cytogenetic Map7F3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Additional References at PubMed
PMID:7890599   PMID:9045631   PMID:10349636   PMID:10379359   PMID:10394363   PMID:10469351   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11278762   PMID:11375421  
PMID:11809830   PMID:12297296   PMID:12477932   PMID:12546791   PMID:12829803   PMID:12832401   PMID:12877659   PMID:14610273   PMID:15331531   PMID:15363411   PMID:15489334   PMID:15690082  
PMID:15964280   PMID:16099818   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16899085   PMID:17517664   PMID:17548353   PMID:17765678   PMID:17916632   PMID:18285343   PMID:18439908  
PMID:18505797   PMID:18535671   PMID:18541526   PMID:18692471   PMID:18827011   PMID:19033398   PMID:19144319   PMID:19188424   PMID:20006577   PMID:20053958   PMID:20237282   PMID:20434989  
PMID:21151919   PMID:21193638   PMID:21267068   PMID:21393240   PMID:21586284   PMID:21828338   PMID:21873635   PMID:22108804   PMID:22767500   PMID:23395379   PMID:23884628   PMID:24469400  
PMID:26331599   PMID:26331606   PMID:27463539   PMID:27933643   PMID:28057922   PMID:29874582   PMID:29896202   PMID:30305365   PMID:30563839   PMID:32325033  


Genomics

Comparative Map Data
Stx4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,439,832 - 127,450,160 (+)NCBIGRCm39mm39
GRCm39 Ensembl7127,423,466 - 127,448,191 (+)Ensembl
GRCm387127,840,643 - 127,850,988 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,824,294 - 127,849,019 (+)EnsemblGRCm38mm10GRCm38
MGSCv377134,985,322 - 134,992,493 (+)NCBIGRCm37mm9NCBIm37
MGSCv367127,632,956 - 127,640,127 (+)NCBImm8
Celera7127,676,765 - 127,683,936 (+)NCBICelera
Cytogenetic Map7F3NCBI
STX4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1631,032,889 - 31,042,975 (+)EnsemblGRCh38hg38GRCh38
GRCh381631,033,095 - 31,040,168 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371631,044,416 - 31,051,489 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,952,404 - 30,958,986 (+)NCBINCBI36hg18NCBI36
Build 341630,952,403 - 30,958,985NCBI
Celera1629,246,015 - 29,253,171 (-)NCBI
Cytogenetic Map16p11.2NCBI
HuRef1628,606,302 - 28,613,331 (+)NCBIHuRef
CHM1_11632,361,656 - 32,368,735 (+)NCBICHM1_1
Stx4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21182,451,108 - 182,459,701 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1182,451,117 - 182,459,979 (+)Ensembl
Rnor_6.01199,287,384 - 199,295,606 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,287,710 - 199,294,979 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,309,816 - 206,318,028 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,125,847 - 187,132,932 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11187,275,727 - 187,282,813 (+)NCBI
Celera1180,102,717 - 180,109,811 (+)NCBICelera
Cytogenetic Map1q37NCBI
STX4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11631,400,189 - 31,407,547 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,400,915 - 31,411,364 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01623,917,576 - 23,933,884 (-)NCBIMhudiblu_PPA_v0panPan3
STX4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,184,044 - 17,189,481 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,184,399 - 17,189,370 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,759,405 - 18,764,838 (-)NCBI
ROS_Cfam_1.0617,314,720 - 17,320,111 (-)NCBI
UMICH_Zoey_3.1617,115,083 - 17,120,474 (-)NCBI
UNSW_CanFamBas_1.0617,034,169 - 17,039,609 (-)NCBI
UU_Cfam_GSD_1.0617,346,511 - 17,351,885 (-)NCBI
Stx4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,303,930 - 125,310,459 (+)NCBI
SpeTri2.0NW_00493650113,401,095 - 13,408,316 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,416,842 - 17,431,053 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,422,266 - 17,431,377 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,752,907 - 17,761,863 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STX4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,725,121 - 27,734,442 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl527,724,495 - 27,732,736 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660681,739,403 - 1,746,068 (-)NCBIVero_WHO_p1.0
Stx4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478214,094,727 - 14,101,210 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
PMC209300P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387127,848,467 - 127,848,934UniSTSGRCm38
MGSCv377134,991,981 - 134,992,448UniSTSGRCm37
Celera7127,683,424 - 127,683,891UniSTS
Cytogenetic Map7F4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76500000133900000Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719413473142366067Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753600000143600000Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)757300000134400000Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773500000143600000Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)779000000137300000Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798565687132565775Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798795739132795739Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined7100238481134238481Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7101151499135151620Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7101394038135394119Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7102094158136094307Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7102094158136094307Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7102094158136094307Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102885996136886157Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105651440139651588Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105750785139750785Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7110108163144108163Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7110108163144108163Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7110108163144108163Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7111365511145365612Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7111365511145365612Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111564398145441459Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111564398145441459Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111564398145441459Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112950524145441459Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7113321003145441459Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7116100000128900000Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7117032360145441459Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117600000134500000Mouse
11059561Lmr21a_mleishmaniasis resistance 21a (mouse)7118151499128365612Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7119094158144844577Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119530844145441459Mouse
38501070Tip5_mtuberculosis immunophenotype 5, IFN-g level (mouse)7121000000130700000Mouse
1357613Bsbob2_mBSB obesity 2 (mouse)Not determined7122651440129217600Mouse
1301903Tlsm1_mthymic lymphoma susceptible 1 (mouse)Not determined7122651440135569172Mouse
4141945Il4ppq_mIL-4 producing potential QTL (mouse)Not determined7124914439129217600Mouse
13207594Nigsq1_mneuroglucopenia-induced glucagon secretion QTL 1 (mouse)7127436844145441459Mouse
1301590Pbwg3_mpostnatal body weight growth 3 (mouse)Not determined7127757504145441459Mouse
1300566Sluc8_msusceptibility to lung cancer 8 (mouse)Not determined7127844414145441459Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1591
Count of miRNA genes:578
Interacting mature miRNAs:714
Transcripts:ENSMUST00000033075, ENSMUST00000121705, ENSMUST00000123180, ENSMUST00000125861, ENSMUST00000138294, ENSMUST00000138399, ENSMUST00000142849, ENSMUST00000152310, ENSMUST00000156537
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC149222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U76832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000033075   ⟹   ENSMUSP00000033075
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,440,936 - 127,448,191 (+)Ensembl
GRCm38.p6 Ensembl7127,841,764 - 127,849,019 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121705   ⟹   ENSMUSP00000112927
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,441,140 - 127,448,172 (+)Ensembl
GRCm38.p6 Ensembl7127,841,968 - 127,849,000 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123180
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,444,956 - 127,447,670 (+)Ensembl
GRCm38.p6 Ensembl7127,845,784 - 127,848,498 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125861
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,447,563 - 127,448,191 (+)Ensembl
GRCm38.p6 Ensembl7127,848,391 - 127,849,019 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138294
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,441,857 - 127,445,758 (+)Ensembl
GRCm38.p6 Ensembl7127,842,685 - 127,846,586 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138399
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,441,142 - 127,443,116 (+)Ensembl
GRCm38.p6 Ensembl7127,841,970 - 127,843,944 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142849
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,442,770 - 127,447,849 (+)Ensembl
GRCm38.p6 Ensembl7127,843,598 - 127,848,677 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152310
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,423,466 - 127,448,191 (+)Ensembl
GRCm38.p6 Ensembl7127,824,294 - 127,849,019 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156537   ⟹   ENSMUSP00000118034
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7127,441,150 - 127,445,790 (+)Ensembl
GRCm38.p6 Ensembl7127,841,978 - 127,846,618 (+)Ensembl
RefSeq Acc Id: NM_009294   ⟹   NP_033320
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397127,440,980 - 127,448,151 (+)NCBI
GRCm387127,841,808 - 127,848,979 (+)NCBI
MGSCv377134,985,322 - 134,992,493 (+)RGD
Celera7127,676,765 - 127,683,936 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006507539   ⟹   XP_006507602
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397127,439,832 - 127,450,160 (+)NCBI
GRCm387127,840,643 - 127,850,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507540   ⟹   XP_006507603
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397127,440,935 - 127,450,160 (+)NCBI
GRCm387127,841,810 - 127,850,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507541   ⟹   XP_006507604
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397127,439,832 - 127,450,160 (+)NCBI
GRCm387127,840,643 - 127,850,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507542   ⟹   XP_006507605
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397127,439,832 - 127,448,172 (+)NCBI
GRCm387127,840,643 - 127,850,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507543   ⟹   XP_006507606
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397127,439,832 - 127,446,805 (+)NCBI
GRCm387127,840,643 - 127,847,633 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242310   ⟹   XP_030098170
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397127,440,935 - 127,450,160 (+)NCBI
GRCm387127,841,770 - 127,850,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242311   ⟹   XP_030098171
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397127,439,832 - 127,450,160 (+)NCBI
GRCm387127,840,643 - 127,850,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036152858   ⟹   XP_036008751
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397127,440,935 - 127,448,172 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_033320   ⟸   NM_009294
- UniProtKB: P70452 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006507602   ⟸   XM_006507539
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006507604   ⟸   XM_006507541
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006507605   ⟸   XM_006507542
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006507606   ⟸   XM_006507543
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006507603   ⟸   XM_006507540
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030098171   ⟸   XM_030242311
- Peptide Label: isoform X8
RefSeq Acc Id: XP_030098170   ⟸   XM_030242310
- Peptide Label: isoform X5
RefSeq Acc Id: ENSMUSP00000033075   ⟸   ENSMUST00000033075
RefSeq Acc Id: ENSMUSP00000118034   ⟸   ENSMUST00000156537
RefSeq Acc Id: ENSMUSP00000112927   ⟸   ENSMUST00000121705
RefSeq Acc Id: XP_036008751   ⟸   XM_036152858
- Peptide Label: isoform X6
Promoters
RGD ID:8665719
Promoter ID:EPDNEW_M10890
Type:initiation region
Name:Stx4a_1
Description:Mus musculus syntaxin 4A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387127,841,783 - 127,841,843EPDNEW
RGD ID:6842126
Promoter ID:MM_KWN:52819
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000076681,   OTTMUST00000076684,   OTTMUST00000076685,   UC009JWZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367134,984,436 - 134,985,352 (+)MPROMDB
RGD ID:6842127
Promoter ID:MM_KWN:52820
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000076686
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367134,985,704 - 134,986,204 (+)MPROMDB
RGD ID:6842131
Promoter ID:MM_KWN:52821
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:OTTMUST00000076688
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367134,987,341 - 134,987,841 (+)MPROMDB
RGD ID:6842132
Promoter ID:MM_KWN:52822
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000076687
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367134,989,299 - 134,989,799 (+)MPROMDB
RGD ID:6842129
Promoter ID:MM_KWN:52823
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:OTTMUST00000076689
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367134,992,041 - 134,992,541 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:893577 AgrOrtholog
Ensembl Genes ENSMUSG00000030805 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000033075 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000112927 UniProtKB/Swiss-Prot
  ENSMUSP00000118034 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033075 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000121705 UniProtKB/Swiss-Prot
  ENSMUST00000156537 UniProtKB/TrEMBL
InterPro SNARE UniProtKB/Swiss-Prot
  Syntaxin/epimorphin_CS UniProtKB/Swiss-Prot
  Syntaxin_N UniProtKB/Swiss-Prot
  T_SNARE_dom UniProtKB/Swiss-Prot
KEGG Report mmu:20909 UniProtKB/Swiss-Prot
MGD MGI:893577 ENTREZGENE
NCBI Gene 20909 ENTREZGENE
Pfam SNARE UniProtKB/Swiss-Prot
  Syntaxin UniProtKB/Swiss-Prot
PhenoGen Stx4a PhenoGen
PROSITE SYNTAXIN UniProtKB/Swiss-Prot
  T_SNARE UniProtKB/Swiss-Prot
SMART SynN UniProtKB/Swiss-Prot
  t_SNARE UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47661 UniProtKB/Swiss-Prot
UniProt D6RJ29_MOUSE UniProtKB/TrEMBL
  P70452 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TSL5 UniProtKB/Swiss-Prot
  Q3UKQ8 UniProtKB/Swiss-Prot
  Q80WT8 UniProtKB/Swiss-Prot