Ubqln1 (ubiquilin 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Ubqln1 (ubiquilin 1) Mus musculus
Analyze
Symbol: Ubqln1
Name: ubiquilin 1
RGD ID: 731466
MGI Page MGI
Description: Predicted to enable several functions, including identical protein binding activity; kinase binding activity; and polyubiquitin modification-dependent protein binding activity. Involved in negative regulation of toll-like receptor 3 signaling pathway. Located in autophagosome. Is expressed in liver. Orthologous to human UBQLN1 (ubiquilin 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110046H03Rik; 1810030E05Rik; AU019746; C77538; D13Ertd372; D13Ertd372e; DA4; DA41; Dsk; Dsk2; Pli; Plic-1; Plic1; protein linking IAP with cytoskeleton 1; ubiquilin-1; XDR; XDRP1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,323,970 - 58,363,467 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1358,323,970 - 58,363,467 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381358,176,156 - 58,215,653 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,176,156 - 58,215,653 (-)Ensemblmm10GRCm38
MGSCv371358,277,517 - 58,317,014 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361358,185,785 - 58,225,215 (-)NCBIMGSCv36mm8
Celera1359,238,584 - 59,277,865 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.95NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP)
6-propyl-2-thiouracil  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[k]fluoranthene  (EXP)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium sulfate  (EXP)
calcidiol  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
enzyme inhibitor  (ISO)
erianin  (EXP)
ethanol  (EXP)
flutamide  (ISO)
furan  (EXP)
gentamycin  (ISO)
glafenine  (ISO)
hydrazine  (EXP)
hydrogen peroxide  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
isoniazide  (ISO)
ivermectin  (ISO)
ketamine  (ISO)
manganese atom  (EXP,ISO)
manganese(0)  (EXP,ISO)
manganese(II) chloride  (ISO)
mercury dichloride  (ISO)
metacetamol  (EXP)
methimazole  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nefazodone  (ISO)
ochratoxin A  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sertraline  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
tetraphene  (EXP)
toluene  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
aggresome  (IEA,ISO,ISS)
autophagosome  (IBA,IDA,IEA,ISO)
cytoplasm  (IEA,ISO,ISS)
cytoplasmic vesicle  (IEA)
cytosol  (IBA,IEA,ISO)
endoplasmic reticulum  (IEA,ISO,ISS)
membrane  (IEA)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)
perinuclear region of cytoplasm  (IEA,ISO,ISS)
plasma membrane  (IEA,ISO,ISS)
proteasome complex  (IEA)
protein-containing complex  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10549293   PMID:10807547   PMID:10922068   PMID:10983987   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15004330   PMID:15489334  
PMID:15782199   PMID:16091357   PMID:16141072   PMID:16141073   PMID:17967808   PMID:19148225   PMID:20529957   PMID:20558241   PMID:21267068   PMID:21695056   PMID:21873635   PMID:22233804  
PMID:22451666   PMID:23774650   PMID:24553923   PMID:26222436   PMID:26225865   PMID:26563932   PMID:27325702   PMID:27477512   PMID:27928652   PMID:28420763   PMID:28598849   PMID:31059032  
PMID:31550482   PMID:32325033   PMID:33028421   PMID:34515612   PMID:35247097   PMID:35409261   PMID:37014234   PMID:37463174   PMID:39159700   PMID:39328932  


Genomics

Comparative Map Data
Ubqln1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,323,970 - 58,363,467 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1358,323,970 - 58,363,467 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381358,176,156 - 58,215,653 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,176,156 - 58,215,653 (-)Ensemblmm10GRCm38
MGSCv371358,277,517 - 58,317,014 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361358,185,785 - 58,225,215 (-)NCBIMGSCv36mm8
Celera1359,238,584 - 59,277,865 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.95NCBI
UBQLN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38983,659,968 - 83,707,958 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl983,659,968 - 83,707,958 (-)Ensemblhg38GRCh38
GRCh37986,274,883 - 86,322,873 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36985,464,699 - 85,512,773 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34983,505,905 - 83,552,422NCBI
Celera956,844,906 - 56,893,172 (-)NCBICelera
Cytogenetic Map9q21.32NCBI
HuRef956,100,224 - 56,148,493 (-)NCBIHuRef
CHM1_1986,421,618 - 86,469,907 (-)NCBICHM1_1
T2T-CHM13v2.0995,809,692 - 95,857,669 (-)NCBIT2T-CHM13v2.0
Ubqln1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8176,438,456 - 6,482,498 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl176,444,124 - 6,482,499 (+)EnsemblGRCr8
mRatBN7.2176,439,002 - 6,477,096 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,439,002 - 6,477,090 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx176,462,325 - 6,499,084 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0177,994,298 - 8,031,031 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,458,709 - 6,495,468 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0176,840,441 - 6,878,842 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl176,840,463 - 6,878,844 (+)Ensemblrn6Rnor6.0
Rnor_5.0179,044,221 - 9,081,483 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41712,370,389 - 12,418,868 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera176,548,513 - 6,585,082 (+)NCBICelera
RGSC_v3.11712,370,388 - 12,418,868 (+)NCBI
Cytogenetic Map17p14NCBI
Ubqln1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554323,575,272 - 3,616,691 (+)Ensembl
ChiLan1.0NW_0049554323,575,034 - 3,617,029 (+)NCBIChiLan1.0ChiLan1.0
UBQLN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21182,819,039 - 82,867,380 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1982,824,982 - 82,873,323 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0941,170,416 - 41,218,656 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1982,597,507 - 82,645,587 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl982,597,507 - 82,645,587 (-)EnsemblpanPan2panpan1.1
UBQLN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1175,767,345 - 75,812,278 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl175,767,188 - 75,838,051 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha176,417,095 - 76,461,954 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0176,068,847 - 76,113,777 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl176,068,563 - 76,139,333 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1175,882,246 - 75,927,063 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0175,647,432 - 75,692,286 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0176,348,320 - 76,393,178 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ubqln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947122,436,790 - 122,481,818 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936828542,407 - 588,679 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936828543,651 - 588,673 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBQLN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1031,275,868 - 31,317,516 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11031,275,916 - 31,317,521 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21035,363,230 - 35,404,196 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBQLN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11294,462,867 - 94,512,313 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1294,461,972 - 94,511,747 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603882,876,902 - 82,926,074 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubqln1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248096,436,658 - 6,487,251 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248096,434,842 - 6,487,442 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Ubqln1
1256 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:988
Count of miRNA genes:360
Interacting mature miRNAs:409
Transcripts:ENSMUST00000058735, ENSMUST00000076454
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse

Markers in Region
RH136282  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381358,177,780 - 58,177,974UniSTSGRCm38
MGSCv371358,279,141 - 58,279,335UniSTSGRCm37
Celera1359,240,208 - 59,240,402UniSTS
Cytogenetic Map13B1UniSTS
cM Map1335.0UniSTS
RH126177  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381358,176,264 - 58,176,504UniSTSGRCm38
MGSCv371358,277,625 - 58,277,865UniSTSGRCm37
Celera1359,238,692 - 59,238,932UniSTS
Cytogenetic Map13B1UniSTS
cM Map1335.0UniSTS
Whitehead/MRC_RH13594.14UniSTS
RH127089  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381358,177,541 - 58,177,780UniSTSGRCm38
MGSCv371358,278,902 - 58,279,141UniSTSGRCm37
Celera1359,239,969 - 59,240,208UniSTS
Cytogenetic Map13B1UniSTS
cM Map1335.0UniSTS
Whitehead/MRC_RH13594.26UniSTS
AA875206  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381358,177,573 - 58,177,793UniSTSGRCm38
MGSCv371358,278,934 - 58,279,154UniSTSGRCm37
Celera1359,240,001 - 59,240,221UniSTS
Cytogenetic Map13B1UniSTS
cM Map1335.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_026842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_152234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC163038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI425982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000058735   ⟹   ENSMUSP00000050191
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,323,970 - 58,363,467 (-)Ensembl
GRCm38.p6 Ensembl1358,176,156 - 58,215,653 (-)Ensembl
Ensembl Acc Id: ENSMUST00000076454   ⟹   ENSMUSP00000075782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,323,977 - 58,363,433 (-)Ensembl
GRCm38.p6 Ensembl1358,176,163 - 58,215,619 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225645   ⟹   ENSMUSP00000153666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,325,631 - 58,331,138 (-)Ensembl
GRCm38.p6 Ensembl1358,177,817 - 58,183,324 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225818
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,325,333 - 58,329,439 (-)Ensembl
GRCm38.p6 Ensembl1358,177,519 - 58,181,625 (-)Ensembl
RefSeq Acc Id: NM_026842   ⟹   NP_081118
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,323,970 - 58,363,467 (-)NCBI
GRCm381358,176,156 - 58,215,653 (-)ENTREZGENE
MGSCv371358,277,517 - 58,317,014 (-)RGD
Celera1359,238,584 - 59,277,865 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_152234   ⟹   NP_689420
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,323,970 - 58,363,467 (-)NCBI
GRCm381358,176,156 - 58,215,653 (-)ENTREZGENE
MGSCv371358,277,517 - 58,317,014 (-)RGD
Celera1359,238,584 - 59,277,865 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_081118   ⟸   NM_026842
- Peptide Label: isoform 1
- UniProtKB: Q9D0Z0 (UniProtKB/Swiss-Prot),   Q91VI8 (UniProtKB/Swiss-Prot),   Q8K141 (UniProtKB/Swiss-Prot),   Q8C835 (UniProtKB/Swiss-Prot),   Q8C7T4 (UniProtKB/Swiss-Prot),   Q80V10 (UniProtKB/Swiss-Prot),   Q9QZM1 (UniProtKB/Swiss-Prot),   Q8R317 (UniProtKB/Swiss-Prot),   Q66K07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_689420   ⟸   NM_152234
- Peptide Label: isoform 2
- UniProtKB: Q3T992 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000153666   ⟸   ENSMUST00000225645
Ensembl Acc Id: ENSMUSP00000075782   ⟸   ENSMUST00000076454
Ensembl Acc Id: ENSMUSP00000050191   ⟸   ENSMUST00000058735
Protein Domains
STI1   UBA   Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R317-F1-model_v2 AlphaFold Q8R317 1-582 view protein structure

Promoters
RGD ID:8680522
Promoter ID:EPDNEW_M18292
Type:single initiation site
Name:Ubqln1_2
Description:Mus musculus ubiquilin 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18293  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381358,183,321 - 58,183,381EPDNEW
RGD ID:8680524
Promoter ID:EPDNEW_M18293
Type:initiation region
Name:Ubqln1_1
Description:Mus musculus ubiquilin 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18292  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381358,215,653 - 58,215,713EPDNEW
RGD ID:6824463
Promoter ID:MM_KWN:14311
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:UC007QTJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361358,282,781 - 58,283,281 (-)MPROMDB
RGD ID:6824461
Promoter ID:MM_KWN:14312
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:NM_026842
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361358,284,156 - 58,284,656 (-)MPROMDB
RGD ID:6847071
Promoter ID:MM_ACW:13451
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day6
Transcripts:UBQLN1.CSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361358,297,956 - 58,298,456 (-)MPROMDB
RGD ID:6824464
Promoter ID:MM_KWN:14313
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC007QTL.1,   UC007QTM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361358,316,936 - 58,317,937 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1860276 AgrOrtholog
Ensembl Genes ENSMUSG00000005312 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000058735 ENTREZGENE
  ENSMUST00000058735.12 UniProtKB/Swiss-Prot
  ENSMUST00000076454 ENTREZGENE
  ENSMUST00000076454.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.260.100 UniProtKB/Swiss-Prot
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/Swiss-Prot
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
InterPro STI1_HS-bd UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
  UBA-like_sf UniProtKB/Swiss-Prot
  Ubiquilin UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
  Ubiquitin_dom UniProtKB/Swiss-Prot
KEGG Report mmu:56085 UniProtKB/Swiss-Prot
MGD MGI:1860276 ENTREZGENE
NCBI Gene 56085 ENTREZGENE
PANTHER UBIQUILIN UniProtKB/Swiss-Prot
  UBIQUILIN-1 UniProtKB/Swiss-Prot
Pfam UBA UniProtKB/Swiss-Prot
  ubiquitin UniProtKB/Swiss-Prot
  UBQLN1 UniProtKB/Swiss-Prot
PhenoGen Ubqln1 PhenoGen
PROSITE UBA UniProtKB/Swiss-Prot
  UBIQUITIN_2 UniProtKB/Swiss-Prot
SMART STI1 UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
  UBQ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46934 UniProtKB/Swiss-Prot
  SSF54236 UniProtKB/Swiss-Prot
UniProt A0A286YE09_MOUSE UniProtKB/TrEMBL
  Q3T992 ENTREZGENE, UniProtKB/TrEMBL
  Q3TN93_MOUSE UniProtKB/TrEMBL
  Q3V2J6_MOUSE UniProtKB/TrEMBL
  Q66K07 ENTREZGENE, UniProtKB/TrEMBL
  Q80V10 ENTREZGENE
  Q8C7T4 ENTREZGENE
  Q8C835 ENTREZGENE
  Q8K141 ENTREZGENE
  Q8R317 ENTREZGENE
  Q91VI8 ENTREZGENE
  Q9D0Z0 ENTREZGENE
  Q9QZM1 ENTREZGENE
  UBQL1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q80V10 UniProtKB/Swiss-Prot
  Q8C7T4 UniProtKB/Swiss-Prot
  Q8C835 UniProtKB/Swiss-Prot
  Q8K141 UniProtKB/Swiss-Prot
  Q91VI8 UniProtKB/Swiss-Prot
  Q9D0Z0 UniProtKB/Swiss-Prot
  Q9QZM1 UniProtKB/Swiss-Prot