Casp2 (caspase 2) - Rat Genome Database

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Gene: Casp2 (caspase 2) Mus musculus
Analyze
Symbol: Casp2
Name: caspase 2
RGD ID: 731460
MGI Page MGI
Description: Enables cysteine-type endopeptidase activity involved in apoptotic process. Acts upstream of or within ectopic germ cell programmed cell death; extrinsic apoptotic signaling pathway in absence of ligand; and positive regulation of apoptotic signaling pathway. Located in cytoplasm and nucleus. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system gland; and liver and biliary system. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder. Orthologous to human CASP2 (caspase 2).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Casp; CASP-2; Caspase-2; Ich-; ICH-1; Nedd; NEDD-2; Nedd2; neural precursor cell expressed developmentally down-regulated protein 2; protease ICH-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39642,241,942 - 42,259,442 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl642,241,919 - 42,259,442 (+)EnsemblGRCm39 Ensembl
GRCm38642,264,902 - 42,282,508 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl642,264,985 - 42,282,508 (+)EnsemblGRCm38mm10GRCm38
MGSCv37642,215,038 - 42,232,495 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36642,194,646 - 42,212,103 (+)NCBIMGSCv36mm8
Celera642,209,337 - 42,226,794 (+)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map620.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-dexrazoxane  (EXP)
(-)-citrinin  (ISO)
(-)-demecolcine  (ISO)
(R)-noradrenaline  (ISO)
(S)-naringenin  (ISO)
(S)-nicotine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dimethylhydrazine  (EXP)
1-nitropyrene  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-methoxyethanol  (ISO)
3,3',5,5'-tetraiodothyroacetic acid  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-nitropropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-nitrophenol  (EXP)
4-nonylphenol  (ISO)
4-vinylcyclohexene dioxide  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (EXP)
acrolein  (EXP)
actinomycin D  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
amsacrine  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (EXP,ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
brefeldin A  (ISO)
butan-1-ol  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
camptothecin  (ISO)
cannabidiol  (ISO)
capsaicin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
carboplatin  (ISO)
casticin  (ISO)
CGP 52608  (ISO)
chelerythrine  (ISO)
chromium(6+)  (ISO)
Cinobufotalin  (ISO)
cisplatin  (EXP,ISO)
clonidine  (ISO)
clonidine (amino form)  (ISO)
clonidine (imino form)  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (EXP,ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (ISO)
dicrotophos  (ISO)
diepoxybutane  (ISO)
diethyl maleate  (ISO)
diethyl phthalate  (EXP)
diethylstilbestrol  (EXP)
diisobutyl phthalate  (EXP)
diisononyl phthalate  (EXP)
Dimethyl phthalate  (ISO)
dimethylarsinic acid  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
epichlorohydrin  (ISO)
ethanol  (ISO)
etoposide  (ISO)
flavanones  (ISO)
folic acid  (EXP)
furan  (ISO)
furosemide  (ISO)
gardenin B  (ISO)
gentamycin  (ISO)
glycyrrhizinic acid  (ISO)
glyphosate  (ISO)
hydrogen peroxide  (ISO)
isobutanol  (ISO)
isoflurane  (ISO)
isoprenaline  (ISO)
L-ascorbic acid  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (EXP)
lithocholic acid  (ISO)
lovastatin  (EXP,ISO)
LY294002  (ISO)
manganese(II) chloride  (ISO)
mechlorethamine  (ISO)
menadione  (EXP)
methamphetamine  (ISO)
methimazole  (ISO)
methotrexate  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
Mitotane  (ISO)
mitoxantrone  (ISO)
Myrtucommulone A  (EXP)
N-[2-amino-6-[(4-fluorophenyl)methylamino]-3-pyridinyl]carbamic acid ethyl ester  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
nickel dichloride  (ISO)
nicotine  (ISO)
norfloxacin  (ISO)
NS-398  (ISO)
ochratoxin A  (ISO)
orphenadrine  (ISO)
oxaliplatin  (ISO)
oxybenzone  (ISO)
oxybuprocaine  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctanoic acid  (ISO)
phenylephrine  (ISO)
picoxystrobin  (ISO)
picrotoxin  (ISO)
podophyllotoxin  (ISO)
Pranoprofen  (ISO)
propylparaben  (ISO)
pyrethrins  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
silibinin  (ISO)
silicon dioxide  (EXP)
sirolimus  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium cyanate  (ISO)
sodium dichromate  (EXP)
staurosporine  (ISO)
sulfadimethoxine  (ISO)
tamoxifen  (EXP)
tauroursodeoxycholic acid  (ISO)
Terfenadine  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
theophylline  (ISO)
thioacetamide  (ISO)
topotecan  (EXP,ISO)
triadimefon  (ISO)
Tributyltin oxide  (ISO)
tunicamycin  (ISO)
undecane  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
violacein  (EXP)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA)
endopeptidase complex  (ISO)
nucleolus  (NAS)
nucleus  (IDA)

References

References - curated
# Reference Title Reference Citation
1. Comparative mapping of rat Iddm4 to segments on HSA7 and MMU6. Hornum L, etal., Mamm Genome 2004 Jan;15(1):53-61.
2. Two caspase-2 transcripts are expressed in rat hippocampus after global cerebral ischemia. Jin K, etal., J Neurochem. 2002 Apr;81(1):25-35.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Increased expression of caspase 2 in experimental and human temporal lobe epilepsy. Narkilahti S, etal., Neuromolecular Med. 2007;9(2):129-44.
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. Caspase gene expression in the brain as a function of the clinical progression of Alzheimer disease. Pompl PN, etal., Arch Neurol. 2003 Mar;60(3):369-76.
9. Comparative analysis of apoptosis and inflammation genes of mice and humans. Reed JC, etal., Genome Res 2003 Jun;13(6B):1376-88.
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1378265   PMID:1449490   PMID:7654317   PMID:7958843   PMID:8087842   PMID:8889548   PMID:8896603   PMID:9038361   PMID:9209399   PMID:9573047   PMID:9723184   PMID:10087912  
PMID:10101687   PMID:10222134   PMID:10349636   PMID:10377054   PMID:10403638   PMID:10452843   PMID:10578172   PMID:10618441   PMID:10655542   PMID:10671365   PMID:10739653   PMID:10931486  
PMID:11042159   PMID:11076861   PMID:11217851   PMID:11438576   PMID:11536012   PMID:11978827   PMID:12107826   PMID:12477715   PMID:12477932   PMID:12480175   PMID:12488331   PMID:12520002  
PMID:14610273   PMID:15073321   PMID:15210727   PMID:15262979   PMID:15326356   PMID:15489334   PMID:15590671   PMID:15640352   PMID:15782199   PMID:15983031   PMID:16012953   PMID:16141072  
PMID:16141073   PMID:16172118   PMID:16183742   PMID:16215683   PMID:16362053   PMID:16481596   PMID:16495337   PMID:17082817   PMID:17188333   PMID:17245644   PMID:17265069   PMID:17666435  
PMID:18311719   PMID:18426910   PMID:18461459   PMID:19035350   PMID:19279217   PMID:19332555   PMID:19364921   PMID:19531356   PMID:19801895   PMID:20022306   PMID:20057499   PMID:21216964  
PMID:21419766   PMID:21464087   PMID:21538476   PMID:21674587   PMID:21873635   PMID:21903589   PMID:22322383   PMID:22343713   PMID:22365665   PMID:22498700   PMID:22515271   PMID:22595758  
PMID:22927979   PMID:23042294   PMID:23504374   PMID:23645208   PMID:23645210   PMID:23748737   PMID:23811850   PMID:23815625   PMID:24248351   PMID:24287941   PMID:24292555   PMID:24691516  
PMID:24741061   PMID:24830635   PMID:24879153   PMID:25144718   PMID:25301067   PMID:25531319   PMID:25611376   PMID:25645943   PMID:25706292   PMID:25796569   PMID:25798619   PMID:25857265  
PMID:26341399   PMID:26890135   PMID:27518436   PMID:27723722   PMID:27906175   PMID:27991927   PMID:28087670   PMID:28129024   PMID:28432080   PMID:28765049   PMID:30220454   PMID:30670683  
PMID:30779911   PMID:30878284   PMID:31399584   PMID:32402333   PMID:34523057   PMID:35085690   PMID:36041455   PMID:37494420  


Genomics

Comparative Map Data
Casp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39642,241,942 - 42,259,442 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl642,241,919 - 42,259,442 (+)EnsemblGRCm39 Ensembl
GRCm38642,264,902 - 42,282,508 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl642,264,985 - 42,282,508 (+)EnsemblGRCm38mm10GRCm38
MGSCv37642,215,038 - 42,232,495 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36642,194,646 - 42,212,103 (+)NCBIMGSCv36mm8
Celera642,209,337 - 42,226,794 (+)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map620.54NCBI
CASP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387143,288,351 - 143,307,696 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7143,288,215 - 143,307,696 (+)EnsemblGRCh38hg38GRCh38
GRCh377142,985,444 - 143,004,789 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367142,695,524 - 142,714,907 (+)NCBINCBI36Build 36hg18NCBI36
Celera7137,822,267 - 137,841,650 (+)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7137,322,670 - 137,342,153 (+)NCBIHuRef
CHM1_17142,922,195 - 142,941,676 (+)NCBICHM1_1
T2T-CHM13v2.07144,643,759 - 144,663,112 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27142,387,424 - 142,406,906 (+)NCBI
Casp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8472,116,265 - 72,134,023 (+)NCBIGRCr8
mRatBN7.2471,149,632 - 71,167,388 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl471,149,669 - 71,167,379 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx476,069,535 - 76,087,171 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0471,982,792 - 72,000,428 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0470,402,261 - 70,419,895 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0471,652,358 - 71,670,228 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl471,652,354 - 71,670,239 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04136,454,723 - 136,474,625 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4470,029,728 - 70,047,164 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1470,305,857 - 70,323,294 (+)NCBI
Celera466,080,364 - 66,098,003 (+)NCBICelera
Cytogenetic Map4q24NCBI
Casp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955494353,310 - 368,873 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955494353,572 - 369,207 (-)NCBIChiLan1.0ChiLan1.0
CASP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26180,141,294 - 180,166,578 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1732,151,551 - 32,176,835 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07135,283,072 - 135,307,855 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17147,773,749 - 147,792,958 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7147,773,749 - 147,792,958 (+)Ensemblpanpan1.1panPan2
CASP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1166,378,447 - 6,396,251 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl166,379,913 - 6,396,646 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha167,368,808 - 7,385,123 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0166,232,171 - 6,251,272 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl166,232,210 - 6,250,056 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1166,181,045 - 6,197,357 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0166,032,942 - 6,049,262 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0166,108,280 - 6,124,667 (-)NCBIUU_Cfam_GSD_1.0
Casp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511812,149,166 - 12,164,126 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936527739,281 - 754,331 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936527739,325 - 754,259 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CASP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl186,941,937 - 6,966,061 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1186,946,432 - 6,966,088 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2187,183,208 - 7,206,964 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CASP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121112,172,614 - 112,189,574 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21112,172,733 - 112,188,744 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660728,895,441 - 8,914,545 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Casp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480011,451,038 - 11,468,205 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480011,451,784 - 11,468,791 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Casp2
671 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2839
Count of miRNA genes:852
Interacting mature miRNAs:1133
Transcripts:ENSMUST00000031895, ENSMUST00000132246, ENSMUST00000132398, ENSMUST00000139930, ENSMUST00000141669, ENSMUST00000141727, ENSMUST00000144821, ENSMUST00000152893, ENSMUST00000156829
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64086823071356155Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64157698575576985Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64209335876093500Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64209335876093500Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64209335876093500Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64209335876093500Mouse

Markers in Region
RH127476  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38642,282,313 - 42,282,495UniSTSGRCm38
MGSCv37642,232,312 - 42,232,494UniSTSGRCm37
Celera642,226,611 - 42,226,793UniSTS
Cytogenetic Map6B2.1UniSTS
Y13085  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38642,281,136 - 42,281,255UniSTSGRCm38
MGSCv37642,231,135 - 42,231,254UniSTSGRCm37
Celera642,225,434 - 42,225,553UniSTS
Cytogenetic Map6B2.1UniSTS
Whitehead/MRC_RH6333.4UniSTS
Casp2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37642,232,301 - 42,232,461UniSTSGRCm37
Celera642,226,600 - 42,226,760UniSTS
Cytogenetic Map6B2.1UniSTS
cM Map620.5UniSTS
cM Map620.5UniSTS
UniSTS:493102  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38642,263,514 - 42,264,262UniSTSGRCm38
MGSCv37642,213,513 - 42,214,261UniSTSGRCm37
Celera642,207,812 - 42,208,560UniSTS
Cytogenetic Map6B2.1UniSTS
Casp2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6B2.1UniSTS
Casp2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6B2.1UniSTS
cM Map620.5UniSTS
Casp2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38642,282,302 - 42,282,462UniSTSGRCm38
MGSCv37642,232,301 - 42,232,461UniSTSGRCm37
Celera642,226,600 - 42,226,760UniSTS
Cytogenetic Map6B2.1UniSTS
cM Map620.5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001409539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW046437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY074786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D28492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000031895   ⟹   ENSMUSP00000031895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl642,241,919 - 42,259,442 (+)Ensembl
GRCm38.p6 Ensembl642,264,985 - 42,282,508 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132246
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl642,244,325 - 42,244,964 (+)Ensembl
GRCm38.p6 Ensembl642,267,391 - 42,268,030 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl642,253,421 - 42,257,467 (+)Ensembl
GRCm38.p6 Ensembl642,276,487 - 42,280,533 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139930
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl642,241,990 - 42,246,056 (+)Ensembl
GRCm38.p6 Ensembl642,265,056 - 42,269,122 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141669
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl642,244,944 - 42,246,541 (+)Ensembl
GRCm38.p6 Ensembl642,268,010 - 42,269,607 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141727
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl642,256,715 - 42,257,575 (+)Ensembl
GRCm38.p6 Ensembl642,279,781 - 42,280,641 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl642,246,219 - 42,256,831 (+)Ensembl
GRCm38.p6 Ensembl642,269,285 - 42,279,897 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152893
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl642,256,571 - 42,257,424 (+)Ensembl
GRCm38.p6 Ensembl642,279,637 - 42,280,490 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156829   ⟹   ENSMUSP00000121184
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl642,242,054 - 42,257,426 (+)Ensembl
GRCm38.p6 Ensembl642,265,120 - 42,280,492 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203089
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl642,256,741 - 42,257,701 (+)Ensembl
GRCm38.p6 Ensembl642,279,807 - 42,280,767 (+)Ensembl
RefSeq Acc Id: NM_001409539   ⟹   NP_001396468
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,241,942 - 42,247,049 (+)NCBI
RefSeq Acc Id: NM_007610   ⟹   NP_031636
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,241,942 - 42,259,442 (+)NCBI
GRCm38642,264,985 - 42,282,508 (+)NCBI
MGSCv37642,215,038 - 42,232,495 (+)RGD
Celera642,209,337 - 42,226,794 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_176859
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,241,942 - 42,259,442 (+)NCBI
RefSeq Acc Id: NR_176860
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,241,942 - 42,259,442 (+)NCBI
RefSeq Acc Id: NR_176861
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,241,942 - 42,259,442 (+)NCBI
RefSeq Acc Id: NR_176862
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,241,942 - 42,259,442 (+)NCBI
RefSeq Acc Id: NR_176863
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,241,942 - 42,259,442 (+)NCBI
RefSeq Acc Id: NP_031636   ⟸   NM_007610
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8C9H7 (UniProtKB/Swiss-Prot),   Q3TCM0 (UniProtKB/Swiss-Prot),   O08737 (UniProtKB/Swiss-Prot),   Q8K241 (UniProtKB/Swiss-Prot),   P29594 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000031895   ⟸   ENSMUST00000031895
RefSeq Acc Id: ENSMUSP00000121184   ⟸   ENSMUST00000156829
RefSeq Acc Id: NP_001396468   ⟸   NM_001409539
- Peptide Label: isoform 2
Protein Domains
CARD   Caspase family p20

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P29594-F1-model_v2 AlphaFold P29594 1-452 view protein structure

Promoters
RGD ID:6839050
Promoter ID:MM_KWN:45774
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:ENSMUST00000095987,   NM_175408,   OTTMUST00000057721,   OTTMUST00000057722,   OTTMUST00000057723,   OTTMUST00000057724,   OTTMUST00000057725,   OTTMUST00000057726
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36642,211,736 - 42,215,192 (+)MPROMDB
RGD ID:6889532
Promoter ID:EPDNEW_M8217
Type:initiation region
Name:Casp2_1
Description:Mus musculus caspase 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38642,265,008 - 42,265,068EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97295 AgrOrtholog
Ensembl Genes ENSMUSG00000029863 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031895 ENTREZGENE
  ENSMUST00000031895.13 UniProtKB/Swiss-Prot
  ENSMUST00000156829.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.1460 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Caspase-like UniProtKB/Swiss-Prot
InterPro CARD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Caspase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Caspase_2 UniProtKB/Swiss-Prot
  Caspase_cys_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Caspase_his_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEATH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_C14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_C14_caspase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_C14_p10 UniProtKB/Swiss-Prot
  Pept_C14_p20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_C14A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12366 UniProtKB/Swiss-Prot
MGD MGI:97295 ENTREZGENE
NCBI Gene 12366 ENTREZGENE
PANTHER CASPASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CARD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Casp2 PhenoGen
PIRSF Caspase_ICE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS IL1BCENZYME UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CARD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CASPASE_CYS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CASPASE_HIS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CASPASE_P10 UniProtKB/Swiss-Prot
  CASPASE_P20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CARD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CASc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52129 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CASP2_MOUSE UniProtKB/Swiss-Prot
  D6RFN6_MOUSE UniProtKB/TrEMBL
  O08737 ENTREZGENE
  P29594 ENTREZGENE
  Q3TCM0 ENTREZGENE
  Q8C9H7 ENTREZGENE
  Q8K241 ENTREZGENE
UniProt Secondary O08737 UniProtKB/Swiss-Prot
  Q3TCM0 UniProtKB/Swiss-Prot
  Q8C9H7 UniProtKB/Swiss-Prot
  Q8K241 UniProtKB/Swiss-Prot