Hs3st1 (heparan sulfate (glucosamine) 3-O-sulfotransferase 1) - Rat Genome Database

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Gene: Hs3st1 (heparan sulfate (glucosamine) 3-O-sulfotransferase 1) Mus musculus
Analyze
Symbol: Hs3st1
Name: heparan sulfate (glucosamine) 3-O-sulfotransferase 1
RGD ID: 731447
MGI Page MGI
Description: Enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity. Involved in glycosaminoglycan biosynthetic process and heparan sulfate proteoglycan biosynthetic process. Is active in Golgi apparatus. Is expressed in several structures, including alimentary system; appendicular skeleton; ear; hindlimb; and nervous system. Orthologous to human HS3ST1 (heparan sulfate-glucosamine 3-sulfotransferase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3-O; 3-Ost; D5Wsu110; D5Wsu110e; heparan sulfate 3-O-sulfotransferase 1; heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1; heparan sulfate glucosamine 3-O-sulfotransferase 1; Hsg3ost
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39539,771,278 - 39,802,791 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl539,771,278 - 39,912,818 (-)EnsemblGRCm39 Ensembl
GRCm38539,613,935 - 39,645,592 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl539,613,935 - 39,755,475 (-)EnsemblGRCm38mm10GRCm38
MGSCv37540,005,174 - 40,035,870 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36539,902,184 - 40,043,724 (-)NCBIMGSCv36mm8
Celera537,077,022 - 37,107,666 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map521.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trimethylbenzene  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (EXP)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
chromium(6+)  (EXP)
clobetasol  (EXP)
corticosterone  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
cytarabine  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (ISO)
gentamycin  (ISO)
L-methionine  (EXP)
lipopolysaccharide  (ISO)
mercury dibromide  (ISO)
naphthalene  (EXP)
naphthalenes  (ISO)
nickel atom  (ISO)
omega-6 fatty acid  (ISO)
ozone  (EXP)
paracetamol  (ISO)
PCB138  (EXP)
phenylmercury acetate  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9346953   PMID:9988767   PMID:10349636   PMID:10922068   PMID:11006120   PMID:11042159   PMID:11076861   PMID:11087757   PMID:11217851   PMID:11597144   PMID:12477932   PMID:12671048  
PMID:12975616   PMID:14610273   PMID:14681479   PMID:15060080   PMID:15096036   PMID:15489334   PMID:15944372   PMID:16141072   PMID:16141073   PMID:18799693   PMID:20798045   PMID:21267068  
PMID:21403420   PMID:21677750   PMID:21873635   PMID:24247246   PMID:24326668   PMID:25325966   PMID:26393505   PMID:28126521   PMID:30228991   PMID:30377379   PMID:30794825   PMID:32201365  
PMID:34321999   PMID:34653670  


Genomics

Comparative Map Data
Hs3st1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39539,771,278 - 39,802,791 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl539,771,278 - 39,912,818 (-)EnsemblGRCm39 Ensembl
GRCm38539,613,935 - 39,645,592 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl539,613,935 - 39,755,475 (-)EnsemblGRCm38mm10GRCm38
MGSCv37540,005,174 - 40,035,870 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36539,902,184 - 40,043,724 (-)NCBIMGSCv36mm8
Celera537,077,022 - 37,107,666 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map521.14NCBI
HS3ST1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38411,393,150 - 11,434,327 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl411,393,150 - 11,429,564 (-)EnsemblGRCh38hg38GRCh38
GRCh37411,394,774 - 11,430,518 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36411,009,086 - 11,039,635 (-)NCBINCBI36Build 36hg18NCBI36
Build 34411,076,256 - 11,106,806NCBI
Celera411,864,401 - 11,894,954 (-)NCBICelera
Cytogenetic Map4p15.33NCBI
HuRef410,732,784 - 10,763,337 (-)NCBIHuRef
CHM1_1411,398,055 - 11,428,601 (-)NCBICHM1_1
T2T-CHM13v2.0411,369,209 - 11,410,393 (-)NCBIT2T-CHM13v2.0
Hs3st1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81475,398,101 - 75,429,628 (+)NCBIGRCr8
mRatBN7.21471,185,826 - 71,223,263 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1471,185,682 - 71,223,248 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1475,621,414 - 75,651,140 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01476,869,044 - 76,898,770 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01473,309,433 - 73,339,159 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01475,880,410 - 75,881,346 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1475,852,060 - 75,882,693 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01475,872,397 - 75,873,333 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41476,438,219 - 76,439,157 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11476,440,619 - 76,441,546 (+)NCBI
Celera1470,167,035 - 70,167,971 (+)NCBICelera
Cytogenetic Map14q21NCBI
Hs3st1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555491,591,605 - 1,623,681 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555491,591,605 - 1,623,681 (+)NCBIChiLan1.0ChiLan1.0
HS3ST1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2311,630,308 - 11,666,199 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1411,838,797 - 11,874,689 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v045,797,803 - 5,829,976 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1411,108,089 - 11,139,043 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl411,108,374 - 11,109,297 (-)Ensemblpanpan1.1panPan2
HS3ST1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1368,306,512 - 68,336,879 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha370,831,990 - 70,862,330 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0368,922,300 - 68,952,641 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl368,950,937 - 68,951,854 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1368,330,085 - 68,360,403 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0368,492,806 - 68,523,133 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0368,864,624 - 68,894,997 (+)NCBIUU_Cfam_GSD_1.0
Hs3st1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528561,974,067 - 62,004,935 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647715,676,178 - 15,706,067 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647715,676,151 - 15,706,067 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HS3ST1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl87,389,780 - 7,423,869 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.187,389,774 - 7,424,558 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HS3ST1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12738,683,032 - 38,716,222 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2738,714,570 - 38,715,493 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604785,456,975 - 85,489,159 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hs3st1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475520,035,055 - 20,039,967 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475520,010,126 - 20,039,988 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hs3st1
1052 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:595
Count of miRNA genes:389
Interacting mature miRNAs:414
Transcripts:ENSMUST00000053116, ENSMUST00000117944, ENSMUST00000137142, ENSMUST00000152057
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
36049766Ars22_mantibody response to SARS-CoV 22, day 29, IgG3 (mouse)53695734445457342Mouse
36049767Ars23_mantibody response to SARS-CoV 23, day 29, Total IgG (mouse)53695734445457342Mouse
36049768Ars24_mantibody response to SARS-CoV 24, 4 days post-rechallenge, IgG3 (mouse)53695734445457342Mouse
36049769Ars13_mantibody response to SARS-CoV 13, day 7, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049770Ars14_mantibody response to SARS-CoV 14, day 7, IgG3 (mouse)53695734445457342Mouse
36049771Ars15_mantibody response to SARS-CoV 15, day 7, IgM (mouse)53695734445457342Mouse
36049772Ars20_mantibody response to SARS-CoV 20, day 15, Total IgG (mouse)53695734445457342Mouse
36049773Ars21_mantibody response to SARS-CoV 21, day 29, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049774Ars16_mantibody response to SARS-CoV 16, day 7, Total IgG (mouse)53695734445457342Mouse
36049775Ars17_mantibody response to SARS-CoV 17, day 15, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049776Ars18_mantibody response to SARS-CoV 18, day 15, IgG3 (mouse)53695734445457342Mouse
36049777Ars19_mantibody response to SARS-CoV 19, day 15, IgM (mouse)53695734445457342Mouse
35673310Ari4_mantibody response to influenza 4, day 15-45, IgG2b (mouse)53695734445457342Mouse
1300926Hpi2_mhepatic PMN infiltration 2 (mouse)Not determined53758148864806579Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse

Markers in Region
MHAa64a4.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38539,650,474 - 39,650,645UniSTSGRCm38
MGSCv37540,041,713 - 40,041,884UniSTSGRCm37
Celera537,113,400 - 37,113,571UniSTS
Cytogenetic Map5B3UniSTS
cM Map522.0UniSTS
Whitehead_YAC2 UniSTS
D5Dmo6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38539,645,528 - 39,645,697UniSTSGRCm38
MGSCv37540,036,767 - 40,036,936UniSTSGRCm37
Celera537,108,563 - 37,108,726UniSTS
Cytogenetic Map5B3UniSTS
cM Map522.0UniSTS
AA963021  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38539,614,167 - 39,614,385UniSTSGRCm38
MGSCv37540,005,406 - 40,005,624UniSTSGRCm37
Celera537,077,254 - 37,077,472UniSTS
Cytogenetic Map5B3UniSTS
cM Map522.0UniSTS
D5Wsu110e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38539,613,940 - 39,614,173UniSTSGRCm38
MGSCv37540,005,179 - 40,005,412UniSTSGRCm37
Celera537,077,027 - 37,077,260UniSTS
Cytogenetic Map5B3UniSTS
cM Map521.0UniSTS
cM Map522.0UniSTS
Hs3st1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38539,614,899 - 39,615,103UniSTSGRCm38
Celera537,077,986 - 37,078,190UniSTS
Cytogenetic Map5B3UniSTS
cM Map522.0UniSTS
Hs3st1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38539,614,408 - 39,614,590UniSTSGRCm38
Celera537,077,495 - 37,077,677UniSTS
Cytogenetic Map5B3UniSTS
cM Map522.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000053116   ⟹   ENSMUSP00000051055
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl539,771,282 - 39,801,977 (-)Ensembl
GRCm38.p6 Ensembl539,613,939 - 39,644,634 (-)Ensembl
RefSeq Acc Id: ENSMUST00000117944   ⟹   ENSMUSP00000113919
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl539,771,278 - 39,912,818 (-)Ensembl
GRCm38.p6 Ensembl539,613,935 - 39,755,475 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137142   ⟹   ENSMUSP00000114997
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl539,772,112 - 39,802,589 (-)Ensembl
GRCm38.p6 Ensembl539,614,769 - 39,645,246 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152057   ⟹   ENSMUSP00000118060
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl539,772,417 - 39,801,940 (-)Ensembl
GRCm38.p6 Ensembl539,615,074 - 39,644,597 (-)Ensembl
RefSeq Acc Id: NM_001421580   ⟹   NP_001408509
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39539,771,278 - 39,802,791 (-)NCBI
RefSeq Acc Id: NM_001421581   ⟹   NP_001408510
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39539,771,278 - 39,801,955 (-)NCBI
RefSeq Acc Id: NM_010474   ⟹   NP_034604
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39539,771,278 - 39,801,974 (-)NCBI
GRCm38539,613,935 - 39,644,631 (-)NCBI
MGSCv37540,005,174 - 40,035,870 (-)RGD
Celera537,077,022 - 37,107,666 (-)RGD
cM Map5 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_034604   ⟸   NM_010474
- Peptide Label: precursor
- UniProtKB: O35310 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000118060   ⟸   ENSMUST00000152057
RefSeq Acc Id: ENSMUSP00000051055   ⟸   ENSMUST00000053116
RefSeq Acc Id: ENSMUSP00000114997   ⟸   ENSMUST00000137142
RefSeq Acc Id: ENSMUSP00000113919   ⟸   ENSMUST00000117944
RefSeq Acc Id: NP_001408509   ⟸   NM_001421580
- Peptide Label: precursor
- UniProtKB: O35310 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001408510   ⟸   NM_001421581
- Peptide Label: precursor
- UniProtKB: O35310 (UniProtKB/Swiss-Prot)
Protein Domains
Sulfotransferase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35310-F1-model_v2 AlphaFold O35310 1-311 view protein structure

Promoters
RGD ID:6886600
Promoter ID:EPDNEW_M6751
Type:multiple initiation site
Name:Hs3st1_1
Description:Mus musculus heparan sulfate 3-O-sulfotransferase 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38539,644,612 - 39,644,672EPDNEW
RGD ID:6837722
Promoter ID:MM_KWN:42131
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4
Transcripts:OTTMUST00000073634,   OTTMUST00000073635,   OTTMUST00000073636
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36540,035,521 - 40,036,021 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1201606 AgrOrtholog
Ensembl Genes ENSMUSG00000051022 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000053116 ENTREZGENE
  ENSMUST00000053116.7 UniProtKB/Swiss-Prot
  ENSMUST00000117944.2 UniProtKB/Swiss-Prot
  ENSMUST00000137142.2 UniProtKB/TrEMBL
  ENSMUST00000152057.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NST/OST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15476 UniProtKB/Swiss-Prot
MGD MGI:1201606 ENTREZGENE
NCBI Gene 15476 ENTREZGENE
PANTHER HEPARAN SULFATE GLUCOSAMINE 3-O-SULFOTRANSFERASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10605 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sulfotransfer_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hs3st1 PhenoGen
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YUR4_MOUSE UniProtKB/TrEMBL
  D3YZM3_MOUSE UniProtKB/TrEMBL
  HS3S1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE