PTGER3 (prostaglandin E receptor 3) - Rat Genome Database

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Gene: PTGER3 (prostaglandin E receptor 3) Homo sapiens
Analyze
Symbol: PTGER3
Name: prostaglandin E receptor 3
RGD ID: 731378
HGNC Page HGNC:9595
Description: Predicted to enable prostaglandin E receptor activity. Predicted to be involved in several processes, including G protein-coupled receptor signaling pathway; negative regulation of gastric acid secretion; and positive regulation of fever generation. Predicted to act upstream of or within several processes, including bicarbonate transport; fever generation; and positive regulation of miRNA transcription. Located in plasma membrane. Biomarker of leiomyoma.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: EP3; EP3-I; EP3-II; EP3-III; EP3-IV; EP3-VI; EP3e; lnc003875; MGC141828; MGC141829; MGC27302; PGE receptor EP3 subtype; PGE receptor, EP3 subtype; PGE2 receptor EP3 subtype; PGE2-R; prostaglandin E receotor EP3 subtype 3 isoform; prostaglandin E receptor 3 (subtype EP3); prostaglandin E2 receptor EP3 subtype; prostaglandin receptor (PGE-2); prostanoid EP3 receptor
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38170,852,358 - 71,047,816 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl170,852,353 - 71,047,816 (-)EnsemblGRCh38hg38GRCh38
GRCh37171,318,041 - 71,513,499 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36171,090,624 - 71,286,079 (-)NCBINCBI36Build 36hg18NCBI36
Build 34171,188,848 - 71,225,512NCBI
Celera169,607,257 - 69,802,711 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef169,428,653 - 69,623,748 (-)NCBIHuRef
CHM1_1171,432,956 - 71,628,842 (-)NCBICHM1_1
T2T-CHM13v2.0170,730,386 - 70,925,810 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-D  (EXP)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (EXP)
3',5'-cyclic AMP  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acetylsalicylic acid  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP)
benzo[e]pyrene  (EXP)
bexarotene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
calciol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
carbon nanotube  (ISO)
celecoxib  (ISO)
chlordecone  (ISO)
choline  (ISO)
ciglitazone  (EXP)
cisplatin  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
dexamethasone  (EXP)
dextran sulfate  (ISO)
diethylstilbestrol  (ISO)
diuron  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
endosulfan  (ISO)
eugenol  (EXP)
excitatory amino acid agonist  (ISO)
flutamide  (ISO)
folic acid  (ISO)
formaldehyde  (EXP,ISO)
genistein  (EXP,ISO)
glafenine  (ISO)
GW 4064  (ISO)
heptachlor  (ISO)
ibuprofen  (EXP)
ketoconazole  (EXP,ISO)
L-methionine  (ISO)
methapyrilene  (EXP)
mifepristone  (ISO)
misoprostol  (ISO)
monosodium L-glutamate  (ISO)
N-nitrosodiethylamine  (ISO)
nickel sulfate  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (ISO)
perfluorooctanoic acid  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
pristane  (ISO)
progesterone  (ISO)
prostaglandin E2  (EXP,ISO)
rac-lactic acid  (EXP)
raloxifene  (EXP)
rofecoxib  (EXP)
rotenone  (ISO)
sarin  (ISO)
SB 431542  (EXP)
sodium arsenite  (EXP)
Soman  (ISO)
staurosporine  (ISO)
sulforaphane  (ISO)
sulprostone  (ISO)
sunitinib  (EXP)
tamoxifen  (EXP)
terbinafine  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
thiram  (EXP)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
trichostatin A  (EXP)
valproic acid  (EXP)
vinyl carbamate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adenylate cyclase-activating G protein-coupled receptor signaling pathway  (IBA)
adenylate cyclase-modulating G protein-coupled receptor signaling pathway  (ISO)
bicarbonate transport  (ISO)
biological_process  (ND)
cAMP biosynthetic process  (ISO)
cAMP/PKA signal transduction  (ISO)
cellular response to forskolin  (ISO)
cellular response to interleukin-1  (ISO)
cellular response to lipopolysaccharide  (ISO)
cellular response to prostaglandin E stimulus  (ISO)
desensitization of G protein-coupled receptor signaling pathway  (ISO)
female pregnancy  (ISO)
fever generation  (ISO)
G protein-coupled receptor signaling pathway  (IEA,TAS)
inflammatory response  (IBA)
intestine smooth muscle contraction  (IBA,ISO)
maternal process involved in parturition  (ISO)
negative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway  (ISO)
negative regulation of calcium ion transmembrane transport  (ISO)
negative regulation of circadian sleep/wake cycle, wakefulness  (ISO)
negative regulation of forebrain neuron differentiation  (ISO)
negative regulation of gastric acid secretion  (IBA)
negative regulation of gastrin-induced gastric acid secretion  (ISO)
negative regulation of insulin secretion  (ISO)
negative regulation of norepinephrine secretion  (ISO)
negative regulation of potassium ion transmembrane transport  (ISO)
phospholipase C-activating G protein-coupled receptor signaling pathway  (IBA,ISO)
positive regulation of calcitonin secretion  (ISO)
positive regulation of circadian sleep/wake cycle, non-REM sleep  (ISO)
positive regulation of colon smooth muscle contraction  (ISO)
positive regulation of cytosolic calcium ion concentration  (IBA,ISO)
positive regulation of fever generation  (ISS)
positive regulation of gastric mucosal blood circulation  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of inhibitory G protein-coupled receptor phosphorylation  (ISO)
positive regulation of myofibroblast contraction  (ISO)
positive regulation of neutrophil extravasation  (ISO)
positive regulation of protein phosphorylation  (ISO)
positive regulation of smooth muscle contraction involved in micturition  (ISO)
positive regulation of substance P secretion  (ISO)
positive regulation of urine volume  (ISO)
positive regulation of vasoconstriction  (ISO)
prostaglandin receptor internalization  (ISO)
receptor internalization  (ISO)
regulation of circadian sleep/wake cycle, wakefulness  (ISO)
regulation of norepinephrine secretion  (ISO)
response to estradiol  (ISO)
response to lipopolysaccharide  (ISO)
response to progesterone  (ISO)
response to salt  (ISO)
response to xenobiotic stimulus  (ISO)
signal transduction  (IEA)
urinary bladder smooth muscle contraction  (ISO)

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Anti-inflammatory effect of prostanoids in mouse and rat skin: evidence for a role of EP3-receptors. Ahluwalia A and Perretti M, J Pharmacol Exp Ther. 1994 Mar;268(3):1526-31.
2. The roles of prostaglandin E receptor subtypes in the cytoprotective action of prostaglandin E2 in rat stomach. Araki H, etal., Aliment Pharmacol Ther. 2000 Apr;14 Suppl 1:116-24.
3. 16,16-Dimethyl prostaglandin E2 inhibits indomethacin-induced small intestinal lesions through EP3 and EP4 receptors. Kunikata T, etal., Dig Dis Sci. 2002 Apr;47(4):894-904.
4. Possible involvement of the locus coeruleus in inhibition by prostanoid EP(3) receptor-selective agonists of morphine withdrawal syndrome in rats. Nakagawa T, etal., Eur J Pharmacol. 2000 Mar 3;390(3):257-66.
5. Spinal prostaglandins facilitate exaggerated A- and C-fiber-mediated reflex responses and are critical to the development of allodynia early after L5-L6 spinal nerve ligation. O'Rielly DD and Loomis CW, Anesthesiology. 2007 Apr;106(4):795-805.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Cyclooxygenase-2 in human and experimental ischemic proliferative retinopathy. Sennlaub F, etal., Circulation. 2003 Jul 15;108(2):198-204. Epub 2003 Jun 23.
9. Downregulation of prostaglandin E receptor subtype EP3 during colon cancer development. Shoji Y, etal., Gut. 2004 Aug;53(8):1151-8.
10. Microglial expression of prostaglandin EP3 receptor in excitotoxic lesions in the rat striatum. Slawik H, etal., Neurochem Int. 2004 Oct;45(5):653-60.
11. Renal cortical regulation of COX-1 and functionally related products in early renovascular hypertension (rat). Theilig F, etal., Am J Physiol Renal Physiol. 2006 Nov;291(5):F987-94. Epub 2006 Jun 20.
12. Impaired febrile response in mice lacking the prostaglandin E receptor subtype EP3. Ushikubi F, etal., Nature 1998 Sep 17;395(6699):281-4.
13. COX-2 inhibition and prostaglandin receptors in experimental nephritis. Waldner C, etal., Eur J Clin Invest. 2003 Nov;33(11):969-75.
14. DNA microarray data integration by ortholog gene analysis reveals potential molecular mechanisms of estrogen-dependent growth of human uterine fibroids. Wei T, etal., BMC Womens Health. 2007 Apr 2;7:5.
15. Elevation of both cyclooxygenase-2 and prostaglandin E2 receptor EP3 expressions in rat placenta after uterine artery ischemia-reperfusion. Yamazaki K, etal., Placenta. 2006 Apr-May;27(4-5):395-401. Epub 2005 Jun 28.
16. Effects of the prostanoid EP3-receptor agonists M&B 28767 and GR 63799X on infarct size caused by regional myocardial ischaemia in the anaesthetized rat. Zacharowski K, etal., Br J Pharmacol. 1999 Feb;126(4):849-58.
17. Adenosine A(1) and prostaglandin E receptor 3 receptors mediate global airway contraction after local epithelial injury. Zhou J, etal., Am J Respir Cell Mol Biol. 2013 Mar;48(3):299-305. doi: 10.1165/rcmb.2012-0174OC. Epub 2012 Dec 6.
Additional References at PubMed
PMID:2834384   PMID:7476918   PMID:7759114   PMID:7883006   PMID:7981210   PMID:8075855   PMID:8117308   PMID:8135729   PMID:8307176   PMID:9065782   PMID:9073510   PMID:9154343  
PMID:10336471   PMID:10947062   PMID:11006128   PMID:11235015   PMID:12477932   PMID:12642666   PMID:12699873   PMID:12743126   PMID:12788892   PMID:14562138   PMID:14699136   PMID:15290741  
PMID:15304361   PMID:15489334   PMID:15528329   PMID:16274459   PMID:16707103   PMID:16710414   PMID:17207965   PMID:17496729   PMID:17644362   PMID:17877755   PMID:18005048   PMID:18023986  
PMID:18296611   PMID:18573679   PMID:18577758   PMID:18632791   PMID:18652829   PMID:18818748   PMID:18996083   PMID:19012178   PMID:19019335   PMID:19064572   PMID:19165680   PMID:19527514  
PMID:19799610   PMID:19913121   PMID:20110411   PMID:20140262   PMID:20237496   PMID:20379614   PMID:20452033   PMID:20452482   PMID:20503412   PMID:20516073   PMID:20587336   PMID:20628086  
PMID:20673868   PMID:20947153   PMID:21052031   PMID:21424266   PMID:21813027   PMID:21873635   PMID:21925169   PMID:21966456   PMID:22110249   PMID:22162473   PMID:22276108   PMID:22342278  
PMID:22397921   PMID:22421267   PMID:22870195   PMID:22915243   PMID:23349487   PMID:23364535   PMID:23382691   PMID:23406763   PMID:23493387   PMID:23805813   PMID:23904482   PMID:24180609  
PMID:25333975   PMID:25416956   PMID:26058972   PMID:26186194   PMID:26661165   PMID:27837675   PMID:28065721   PMID:28514442   PMID:28630103   PMID:28710231   PMID:28753926   PMID:29401613  
PMID:29532938   PMID:29661238   PMID:29892012   PMID:30338939   PMID:30402741   PMID:30481825   PMID:30510192   PMID:30510194   PMID:30655206   PMID:30835912   PMID:31097585   PMID:31485769  
PMID:32488496   PMID:32580276   PMID:33961781   PMID:34822808   PMID:35113749   PMID:35134851   PMID:35781818   PMID:36578105   PMID:38566528  


Genomics

Comparative Map Data
PTGER3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38170,852,358 - 71,047,816 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl170,852,353 - 71,047,816 (-)EnsemblGRCh38hg38GRCh38
GRCh37171,318,041 - 71,513,499 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36171,090,624 - 71,286,079 (-)NCBINCBI36Build 36hg18NCBI36
Build 34171,188,848 - 71,225,512NCBI
Celera169,607,257 - 69,802,711 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef169,428,653 - 69,623,748 (-)NCBIHuRef
CHM1_1171,432,956 - 71,628,842 (-)NCBICHM1_1
T2T-CHM13v2.0170,730,386 - 70,925,810 (-)NCBIT2T-CHM13v2.0
Ptger3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393157,272,459 - 157,350,392 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3157,272,529 - 157,351,525 (+)EnsemblGRCm39 Ensembl
GRCm383157,566,821 - 157,644,758 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3157,566,892 - 157,645,888 (+)EnsemblGRCm38mm10GRCm38
MGSCv373157,229,856 - 157,307,722 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363157,502,185 - 157,580,051 (+)NCBIMGSCv36mm8
Celera3164,034,893 - 164,113,113 (+)NCBICelera
Cytogenetic Map3H4NCBI
cM Map381.32NCBI
Ptger3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82249,264,985 - 249,409,966 (+)NCBIGRCr8
mRatBN7.22246,606,131 - 246,750,970 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2246,606,183 - 246,684,434 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2254,318,634 - 254,403,084 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02252,212,449 - 252,296,915 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02247,184,945 - 247,269,307 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02263,895,093 - 263,979,682 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2263,895,241 - 263,979,698 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02282,614,936 - 282,760,641 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42255,680,691 - 255,759,202 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12255,695,297 - 255,773,809 (+)NCBI
Celera2238,415,230 - 238,493,209 (+)NCBICelera
Cytogenetic Map2q45NCBI
Ptger3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542321,096,926 - 21,164,435 (+)NCBIChiLan1.0ChiLan1.0
PTGER3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21155,837,765 - 156,032,636 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11154,996,361 - 155,091,432 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0170,076,610 - 70,271,475 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1172,058,998 - 72,254,063 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl172,059,441 - 72,254,063 (-)Ensemblpanpan1.1panPan2
PTGER3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1674,932,789 - 74,986,573 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha677,575,622 - 77,753,496 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0675,490,852 - 75,668,770 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl675,490,852 - 75,714,812 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1675,042,922 - 75,220,964 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0674,940,272 - 75,118,118 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0675,437,418 - 75,616,001 (+)NCBIUU_Cfam_GSD_1.0
Ptger3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505883,239,312 - 83,315,450 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365911,174,069 - 1,249,410 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365911,174,364 - 1,250,233 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTGER3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6141,958,955 - 142,161,286 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16141,958,955 - 142,160,437 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26131,574,664 - 131,776,520 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTGER3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12062,093,830 - 62,293,360 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2062,095,458 - 62,174,959 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603355,495,971 - 55,576,801 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptger3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474225,177,340 - 25,356,911 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PTGER3
20 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p32.1-31.1(chr1:60473800-70944955)x1 copy number loss See cases [RCV000050703] Chr1:60473800..70944955 [GRCh38]
Chr1:60939472..71410638 [GRCh37]
Chr1:60712060..71183226 [NCBI36]
Chr1:1p32.1-31.1		 pathogenic
GRCh38/hg38 1p32.3-31.1(chr1:52595352-76767765)x3 copy number gain See cases [RCV000051822] Chr1:52595352..76767765 [GRCh38]
Chr1:53061024..77233450 [GRCh37]
Chr1:52833612..77006038 [NCBI36]
Chr1:1p32.3-31.1		 pathogenic
GRCh38/hg38 1p32.2-31.1(chr1:57350574-71325924)x1 copy number loss See cases [RCV000053841] Chr1:57350574..71325924 [GRCh38]
Chr1:57816246..71791607 [GRCh37]
Chr1:57588834..71564195 [NCBI36]
Chr1:1p32.2-31.1		 pathogenic
GRCh38/hg38 1p32.1-31.1(chr1:59632500-76730877)x1 copy number loss See cases [RCV000053842] Chr1:59632500..76730877 [GRCh38]
Chr1:60098172..77196562 [GRCh37]
Chr1:59870760..76969150 [NCBI36]
Chr1:1p32.1-31.1		 pathogenic
GRCh38/hg38 1p31.3-31.1(chr1:67239704-71924806)x1 copy number loss See cases [RCV000053843] Chr1:67239704..71924806 [GRCh38]
Chr1:67705387..72390489 [GRCh37]
Chr1:67477975..72163077 [NCBI36]
Chr1:1p31.3-31.1		 pathogenic
NM_198714.1(PTGER3):c.1118C>T (p.Ser373Phe) single nucleotide variant Malignant melanoma [RCV000060240] Chr1:70974348 [GRCh38]
Chr1:71440031 [GRCh37]
Chr1:71212619 [NCBI36]
Chr1:1p31.1		 not provided
NM_198714.1(PTGER3):c.918C>T (p.Ile306=) single nucleotide variant Malignant melanoma [RCV000060241] Chr1:71012464 [GRCh38]
Chr1:71478147 [GRCh37]
Chr1:71250735 [NCBI36]
Chr1:1p31.1		 not provided
GRCh38/hg38 1p32.1-31.1(chr1:59760856-71578052)x1 copy number loss See cases [RCV000133710] Chr1:59760856..71578052 [GRCh38]
Chr1:60226528..72043735 [GRCh37]
Chr1:59999116..71816323 [NCBI36]
Chr1:1p32.1-31.1		 pathogenic
GRCh38/hg38 1p32.1-22.3(chr1:58819605-86098611)x1 copy number loss See cases [RCV000136913] Chr1:58819605..86098611 [GRCh38]
Chr1:59285277..86564294 [GRCh37]
Chr1:59057865..86336882 [NCBI36]
Chr1:1p32.1-22.3		 pathogenic
GRCh38/hg38 1p31.1(chr1:70907033-70991687)x1 copy number loss See cases [RCV000141296] Chr1:70907033..70991687 [GRCh38]
Chr1:71372716..71457370 [GRCh37]
Chr1:71145304..71229958 [NCBI36]
Chr1:1p31.1		 uncertain significance
GRCh38/hg38 1p31.3-31.1(chr1:64072618-75518432)x3 copy number gain See cases [RCV000142452] Chr1:64072618..75518432 [GRCh38]
Chr1:64538290..75984117 [GRCh37]
Chr1:64310878..75756705 [NCBI36]
Chr1:1p31.3-31.1		 pathogenic
GRCh38/hg38 1p31.3-31.1(chr1:66865125-77123381)x1 copy number loss See cases [RCV000143129] Chr1:66865125..77123381 [GRCh38]
Chr1:67330808..77589066 [GRCh37]
Chr1:67103396..77361654 [NCBI36]
Chr1:1p31.3-31.1		 pathogenic
GRCh38/hg38 1p31.1(chr1:70716347-71407975)x3 copy number gain See cases [RCV000143773] Chr1:70716347..71407975 [GRCh38]
Chr1:71182030..71873658 [GRCh37]
Chr1:70954618..71646246 [NCBI36]
Chr1:1p31.1		 likely benign
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12		 likely benign
GRCh37/hg19 1p31.1(chr1:71415134-71468268)x1 copy number loss See cases [RCV000447312] Chr1:71415134..71468268 [GRCh37]
Chr1:1p31.1		 likely benign
GRCh37/hg19 1p31.3-31.1(chr1:63252828-77402595)x1 copy number loss See cases [RCV000446378] Chr1:63252828..77402595 [GRCh37]
Chr1:1p31.3-31.1		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p31.3-22.3(chr1:64321264-88153669)x1 copy number loss See cases [RCV000511392] Chr1:64321264..88153669 [GRCh37]
Chr1:1p31.3-22.3		 pathogenic|uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
NM_198718.2(PTGER3):c.1112G>A (p.Cys371Tyr) single nucleotide variant not specified [RCV004310700] Chr1:70953052 [GRCh38]
Chr1:71418735 [GRCh37]
Chr1:1p31.1		 uncertain significance
GRCh37/hg19 1p31.3-31.1(chr1:61351024-79583933)x1 copy number loss See cases [RCV000512152] Chr1:61351024..79583933 [GRCh37]
Chr1:1p31.3-31.1		 pathogenic
GRCh37/hg19 1p31.1(chr1:70885420-71331430)x3 copy number gain not provided [RCV000684585] Chr1:70885420..71331430 [GRCh37]
Chr1:1p31.1		 uncertain significance
GRCh37/hg19 1p31.3-31.1(chr1:62434799-71656180)x3 copy number gain not provided [RCV000684577] Chr1:62434799..71656180 [GRCh37]
Chr1:1p31.3-31.1		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p31.1(chr1:71414863-71465292)x1 copy number loss not provided [RCV000736532] Chr1:71414863..71465292 [GRCh37]
Chr1:1p31.1		 benign
GRCh37/hg19 1p31.1(chr1:71414863-71458162)x1 copy number loss not provided [RCV000736531] Chr1:71414863..71458162 [GRCh37]
Chr1:1p31.1		 benign
GRCh37/hg19 1p31.1(chr1:71410579-78131158) copy number gain not provided [RCV000767771] Chr1:71410579..78131158 [GRCh37]
Chr1:1p31.1		 pathogenic
NM_198718.2(PTGER3):c.1185del (p.Asn395fs) deletion not provided [RCV000949648] Chr1:70952979 [GRCh38]
Chr1:71418662 [GRCh37]
Chr1:1p31.1		 likely benign
NM_198719.2(PTGER3):c.111C>G (p.Leu37=) single nucleotide variant not provided [RCV000958458] Chr1:71047467 [GRCh38]
Chr1:71513150 [GRCh37]
Chr1:1p31.1		 benign
GRCh37/hg19 1p31.1(chr1:71366112-71468493)x1 copy number loss not provided [RCV001005106] Chr1:71366112..71468493 [GRCh37]
Chr1:1p31.1		 uncertain significance
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1		 uncertain significance
GRCh37/hg19 1p31.3-22.3(chr1:67851233-86101340)x1 copy number loss not provided [RCV000846441] Chr1:67851233..86101340 [GRCh37]
Chr1:1p31.3-22.3		 pathogenic
Single allele deletion Intellectual disability, severe [RCV000824954] Chr1:59922631..72058653 [GRCh37]
Chr1:1p32.1-31.1		 pathogenic
Single allele deletion not provided [RCV000844927] Chr1:66085524..88429789 [GRCh37]
Chr1:1p31.3-22.2		 not provided
GRCh37/hg19 1p31.3-31.1(chr1:66868168-77106425)x1 copy number loss not provided [RCV000847457] Chr1:66868168..77106425 [GRCh37]
Chr1:1p31.3-31.1		 pathogenic
GRCh37/hg19 1p31.1(chr1:71419650-72398325)x1 copy number loss not provided [RCV001005107] Chr1:71419650..72398325 [GRCh37]
Chr1:1p31.1		 uncertain significance
GRCh37/hg19 1p31.3-22.1(chr1:68180293-92731957) copy number loss not specified [RCV002053392] Chr1:68180293..92731957 [GRCh37]
Chr1:1p31.3-22.1		 pathogenic
Single allele duplication not specified [RCV002286371] Chr1:66885559..77949895 [GRCh38]
Chr1:1p31.3-31.1		 uncertain significance
NM_198719.2(PTGER3):c.64A>C (p.Thr22Pro) single nucleotide variant not specified [RCV004145344] Chr1:71047514 [GRCh38]
Chr1:71513197 [GRCh37]
Chr1:1p31.1		 likely benign
GRCh37/hg19 1p31.1(chr1:69989275-72180606)x1 copy number loss not provided [RCV002475801] Chr1:69989275..72180606 [GRCh37]
Chr1:1p31.1		 uncertain significance
NM_198719.2(PTGER3):c.1068G>T (p.Lys356Asn) single nucleotide variant not specified [RCV004161147] Chr1:71012314 [GRCh38]
Chr1:71477997 [GRCh37]
Chr1:1p31.1		 uncertain significance
NM_198718.2(PTGER3):c.1151A>T (p.His384Leu) single nucleotide variant not specified [RCV004104053] Chr1:70953013 [GRCh38]
Chr1:71418696 [GRCh37]
Chr1:1p31.1		 uncertain significance
NM_198719.2(PTGER3):c.989T>C (p.Ile330Thr) single nucleotide variant not specified [RCV004162950] Chr1:71012393 [GRCh38]
Chr1:71478076 [GRCh37]
Chr1:1p31.1		 uncertain significance
NM_198719.2(PTGER3):c.23G>A (p.Gly8Glu) single nucleotide variant not specified [RCV004084429] Chr1:71047555 [GRCh38]
Chr1:71513238 [GRCh37]
Chr1:1p31.1		 uncertain significance
NM_198719.2(PTGER3):c.971A>G (p.Glu324Gly) single nucleotide variant not specified [RCV004278554] Chr1:71012411 [GRCh38]
Chr1:71478094 [GRCh37]
Chr1:1p31.1		 uncertain significance
NM_198719.2(PTGER3):c.121C>G (p.Pro41Ala) single nucleotide variant not specified [RCV004323929] Chr1:71047457 [GRCh38]
Chr1:71513140 [GRCh37]
Chr1:1p31.1		 uncertain significance
GRCh37/hg19 1p31.1(chr1:70886158-71330939)x3 copy number gain not specified [RCV003986573] Chr1:70886158..71330939 [GRCh37]
Chr1:1p31.1		 uncertain significance
NM_198719.2(PTGER3):c.47G>A (p.Arg16His) single nucleotide variant not specified [RCV004515612] Chr1:71047531 [GRCh38]
Chr1:71513214 [GRCh37]
Chr1:1p31.1		 uncertain significance
NM_198719.2(PTGER3):c.694T>C (p.Ser232Pro) single nucleotide variant not specified [RCV004515614] Chr1:71046884 [GRCh38]
Chr1:71512567 [GRCh37]
Chr1:1p31.1		 uncertain significance
NM_198719.2(PTGER3):c.935T>C (p.Val312Ala) single nucleotide variant not specified [RCV004515616] Chr1:71012447 [GRCh38]
Chr1:71478130 [GRCh37]
Chr1:1p31.1		 uncertain significance
NM_198719.2(PTGER3):c.490T>C (p.Trp164Arg) single nucleotide variant not specified [RCV004515613] Chr1:71047088 [GRCh38]
Chr1:71512771 [GRCh37]
Chr1:1p31.1		 uncertain significance
NM_198719.2(PTGER3):c.214C>T (p.Leu72Phe) single nucleotide variant not specified [RCV004515611] Chr1:71047364 [GRCh38]
Chr1:71513047 [GRCh37]
Chr1:1p31.1		 uncertain significance
NM_198719.2(PTGER3):c.820G>A (p.Gly274Ser) single nucleotide variant not specified [RCV004515615] Chr1:71046758 [GRCh38]
Chr1:71512441 [GRCh37]
Chr1:1p31.1		 uncertain significance
NM_198718.2(PTGER3):c.1212C>G (p.Ser404Arg) single nucleotide variant not specified [RCV004515610] Chr1:70952952 [GRCh38]
Chr1:71418635 [GRCh37]
Chr1:1p31.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3946
Count of miRNA genes:1077
Interacting mature miRNAs:1316
Transcripts:ENST00000306666, ENST00000351052, ENST00000354608, ENST00000356595, ENST00000361210, ENST00000370924, ENST00000370931, ENST00000370932, ENST00000414819, ENST00000460330, ENST00000479353, ENST00000497146
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406912385GWAS561361_Hself reported educational attainment QTL GWAS561361 (human)0.000009self reported educational attainment17092877570928776Human
406926658GWAS575634_Hbody height QTL GWAS575634 (human)1e-08body height (VT:0001253)body height (CMO:0000106)17099317570993176Human
406926853GWAS575829_Hbody height QTL GWAS575829 (human)2e-08body height (VT:0001253)body height (CMO:0000106)17101525671015257Human
407256654GWAS905630_Hhigh density lipoprotein cholesterol measurement QTL GWAS905630 (human)3e-09high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)17094918070949181Human
407104458GWAS753434_Hself reported educational attainment QTL GWAS753434 (human)8e-10self reported educational attainment17097677470976775Human
407087759GWAS736735_Hintelligence QTL GWAS736735 (human)3e-08intelligence17096088670960887Human
407118153GWAS767129_Hsmoking status measurement QTL GWAS767129 (human)2e-12smoking status measurement17102443971024440Human
406984719GWAS633695_Hdepressive symptom measurement QTL GWAS633695 (human)0.000003depressive symptom measurement17102645071026451Human
407244232GWAS893208_Hsusceptibility to Mycobacterium tuberculosis infection measurement QTL GWAS893208 (human)0.000006susceptibility to Mycobacterium tuberculosis infection measurement17090601470906015Human
407118602GWAS767578_Hsmoking status measurement QTL GWAS767578 (human)8e-11smoking status measurement17102443971024440Human
407283669GWAS932645_Hhigh density lipoprotein cholesterol measurement QTL GWAS932645 (human)5e-13high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)17096304970963050Human
406977751GWAS626727_Hgut microbiome measurement QTL GWAS626727 (human)0.000001gut microbiome measurement17088267470882675Human
407195923GWAS844899_Hasparagine measurement QTL GWAS844899 (human)0.000006asparagine measurementblood amino acid measurement (CMO:0003730)17090959270909593Human
406979866GWAS628842_Hdental caries QTL GWAS628842 (human)0.000003dental caries17087007070870071Human
407170525GWAS819501_Halcohol use disorder measurement, longitudinal alcohol consumption measurement QTL GWAS819501 (human)0.000002alcohol use disorder measurement, longitudinal alcohol consumption measurementcalculated drink intake measurement (CMO:0002330)17103776471037765Human
2292793PRSTS24_HProstate tumor susceptibility QTL 24 (human)Prostate tumor susceptibilitylate onset16853299294532992Human
407332262GWAS981238_Htriglyceride measurement QTL GWAS981238 (human)1e-08triglyceride measurementblood triglyceride level (CMO:0000118)17093215270932153Human
406914211GWAS563187_Hself reported educational attainment QTL GWAS563187 (human)1e-08self reported educational attainment17092877570928776Human
406949667GWAS598643_Hword list delayed recall measurement, memory performance, paragraph delayed recall measurement QTL GWAS598643 (human)0.000002word list delayed recall measurement, memory performance, paragraph delayed recall measurement17099317570993176Human
1578620LDLPS20_HLow density lipoprotein particle size QTL 21 (human)2.040.00046LDL particle size15253110578531105Human
407122656GWAS771632_Halcohol consumption measurement QTL GWAS771632 (human)3e-09alcohol consumption measurementethanol drink intake rate (CMO:0001407)17102620771026208Human
407117228GWAS766204_Halcohol consumption measurement QTL GWAS766204 (human)3e-12alcohol consumption measurementethanol drink intake rate (CMO:0001407)17102795671027957Human
407116841GWAS765817_Hself reported educational attainment QTL GWAS765817 (human)5e-10self reported educational attainment17097677470976775Human
406929708GWAS578684_Halcohol consumption measurement QTL GWAS578684 (human)5e-22alcohol consumption measurementethanol drink intake rate (CMO:0001407)17102620771026208Human
1578602LDLPS21_HLow density lipoprotein particle size QTL 21 (human)2.050.00037LDL particle size15253110578531105Human
407027057GWAS676033_Hserum IgG glycosylation measurement QTL GWAS676033 (human)0.000007serum IgG glycosylation measurement17097746770977468Human
407132849GWAS781825_Htriglyceride:HDL cholesterol ratio QTL GWAS781825 (human)0.0000004triglyceride:HDL cholesterol ratio17094918070949181Human
2316890GLUCO302_HGlucose level QTL 302 (human)0.005Glucose level16853299294532992Human
2289499BW445_HBody weight QTL 445 (human)2.26Body morphometrywaist to hip ratio16853299294532992Human
406943800GWAS592776_Halcohol consumption measurement QTL GWAS592776 (human)1e-08alcohol consumption measurementethanol drink intake rate (CMO:0001407)17103776471037765Human
1578594LDLPS19_HLow density lipoprotein particle size QTL 19 (human)2.560.00009LDL particle size15253110578531105Human
1581539BP75_HBlood pressure QTL 75 (human)2.40.001Blood pressurepulse pressure16853299294532992Human
406973821GWAS622797_Halcohol consumption measurement QTL GWAS622797 (human)2e-21alcohol consumption measurementethanol drink intake rate (CMO:0001407)17103751871037519Human
407325817GWAS974793_Hdiet measurement QTL GWAS974793 (human)7e-11diet measurementfood intake measurement (CMO:0000772)17092900070929001Human
407132730GWAS781706_Htriglyceride:HDL cholesterol ratio QTL GWAS781706 (human)7e-09triglyceride:HDL cholesterol ratio17094918070949181Human
406973823GWAS622799_Halcohol consumption measurement QTL GWAS622799 (human)2e-21alcohol consumption measurementethanol drink intake rate (CMO:0001407)17103776471037765Human

Markers in Region
D1S192  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37171,486,324 - 71,486,526UniSTSGRCh37
Build 36171,258,912 - 71,259,114RGDNCBI36
Celera169,775,534 - 69,775,736RGD
Cytogenetic Map1p31.2UniSTS
HuRef169,596,546 - 69,596,752UniSTS
HuRef169,596,635 - 69,596,837UniSTS
Marshfield Genetic Map1102.02RGD
Marshfield Genetic Map1102.02UniSTS
Genethon Genetic Map1104.3UniSTS
TNG Radiation Hybrid Map139759.0UniSTS
Stanford-G3 RH Map13531.0UniSTS
GeneMap99-GB4 RH Map1187.68UniSTS
Whitehead-YAC Contig Map1 UniSTS
GeneMap99-G3 RH Map13487.0UniSTS
D1S1178  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37136,196,136 - 36,196,533UniSTSGRCh37
GRCh37171,446,882 - 71,447,147UniSTSGRCh37
Build 36135,968,723 - 35,969,120RGDNCBI36
Celera169,736,108 - 69,736,357UniSTS
Celera134,470,596 - 34,470,993RGD
Cytogenetic Map11q13.4-q13.5UniSTS
Cytogenetic Map1p31.2UniSTS
HuRef169,557,506 - 69,557,755UniSTS
HuRef1162,983,543 - 62,984,788UniSTS
Marshfield Genetic Map1101.48UniSTS
Marshfield Genetic Map1101.48RGD
D1S3370  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37171,418,220 - 71,418,343UniSTSGRCh37
Build 36171,190,808 - 71,190,931RGDNCBI36
Celera169,707,447 - 69,707,570RGD
Cytogenetic Map1p31.2UniSTS
HuRef169,528,849 - 69,528,972UniSTS
Whitehead-YAC Contig Map1 UniSTS
SHGC-84527  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37171,362,740 - 71,362,941UniSTSGRCh37
Build 36171,135,328 - 71,135,529RGDNCBI36
Celera169,651,961 - 69,652,162RGD
Cytogenetic Map1p31.2UniSTS
HuRef169,473,359 - 69,473,560UniSTS
TNG Radiation Hybrid Map139694.0UniSTS
RH122423  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37171,400,230 - 71,400,517UniSTSGRCh37
Build 36171,172,818 - 71,173,105RGDNCBI36
Celera169,689,458 - 69,689,745RGD
Cytogenetic Map1p31.2UniSTS
HuRef169,510,860 - 69,511,147UniSTS
TNG Radiation Hybrid Map139710.0UniSTS
D1S3321  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37171,318,075 - 71,318,403UniSTSGRCh37
Build 36171,090,663 - 71,090,991RGDNCBI36
Celera169,607,296 - 69,607,624RGD
Cytogenetic Map1p31.2UniSTS
HuRef169,428,692 - 69,429,020UniSTS
Stanford-G3 RH Map13549.0UniSTS
GeneMap99-GB4 RH Map1189.6UniSTS
Whitehead-RH Map1216.7UniSTS
Whitehead-YAC Contig Map1 UniSTS
GeneMap99-G3 RH Map13505.0UniSTS
PMC197251P3  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37171,512,626 - 71,513,020UniSTSGRCh37
Build 36171,285,214 - 71,285,608RGDNCBI36
Celera169,801,846 - 69,802,240RGD
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map1p31.2UniSTS
HuRef169,622,883 - 69,623,277UniSTS
WI-22460  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37171,472,566 - 71,472,826UniSTSGRCh37
Build 36171,245,154 - 71,245,414RGDNCBI36
Celera169,761,777 - 69,762,037RGD
Cytogenetic Map1p31.2UniSTS
HuRef169,582,921 - 69,583,181UniSTS
GeneMap99-GB4 RH Map1189.6UniSTS
Whitehead-RH Map1216.7UniSTS
STS-Z40794  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37171,472,566 - 71,472,643UniSTSGRCh37
Build 36171,245,154 - 71,245,231RGDNCBI36
Celera169,761,777 - 69,761,854RGD
Cytogenetic Map1p31.2UniSTS
HuRef169,582,921 - 69,582,998UniSTS
GeneMap99-GB4 RH Map1187.68UniSTS
AL009426  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37171,483,997 - 71,484,139UniSTSGRCh37
Build 36171,256,585 - 71,256,727RGDNCBI36
Celera169,773,206 - 69,773,348RGD
Cytogenetic Map1p31.2UniSTS
HuRef169,594,307 - 69,594,449UniSTS
D1S2139  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37171,438,733 - 71,439,060UniSTSGRCh37
Build 36171,211,321 - 71,211,648RGDNCBI36
Celera169,727,970 - 69,728,287RGD
Cytogenetic Map1p31.2UniSTS
HuRef169,549,372 - 69,549,685UniSTS
Stanford-G3 RH Map13553.0UniSTS
Whitehead-RH Map1211.2UniSTS
Whitehead-YAC Contig Map1 UniSTS
D1S3367  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37171,436,625 - 71,436,748UniSTSGRCh37
Build 36171,209,213 - 71,209,336RGDNCBI36
Celera169,725,851 - 69,725,974RGD
Cytogenetic Map1p31.2UniSTS
HuRef169,547,253 - 69,547,376UniSTS
GeneMap99-GB4 RH Map1189.89UniSTS
Whitehead-YAC Contig Map1 UniSTS
D1S192  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1p31.2UniSTS
TNG Radiation Hybrid Map139759.0UniSTS
Stanford-G3 RH Map13531.0UniSTS
GeneMap99-G3 RH Map13487.0UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2329 2787 2232 4794 1653 2172 5 560 1406 398 2210 6573 5920 41 3612 1 792 1669 1508 168 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_029509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001126044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_028292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_028293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_028294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011541810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_946714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB451481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI273491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL031429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL050227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL158087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL700981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX814544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX814552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX814554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY387856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY429108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC118578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC118659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS173017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D38297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D38298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D38299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D38300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D38301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D86096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D86097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D86098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF534325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JA738749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JA738751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JA738753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JA738755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JA738757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JA738759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JA738761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JA738763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JA738765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JA738767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF454969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L26976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L27488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L27489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L27490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L32660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L32661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L32662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S68874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S68875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S69200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S69326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U13214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U13215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U13216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U13217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U13218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X83857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X83858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X83859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X83860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X83861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X83862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X83863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000306666   ⟹   ENSP00000302313
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl170,970,782 - 71,047,816 (-)Ensembl
Ensembl Acc Id: ENST00000351052   ⟹   ENSP00000280208
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl170,974,293 - 71,047,808 (-)Ensembl
Ensembl Acc Id: ENST00000354608   ⟹   ENSP00000346624
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl170,997,159 - 71,047,808 (-)Ensembl
Ensembl Acc Id: ENST00000356595   ⟹   ENSP00000349003
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl170,952,432 - 71,047,788 (-)Ensembl
Ensembl Acc Id: ENST00000361210   ⟹   ENSP00000424340
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl170,852,442 - 71,047,808 (-)Ensembl
Ensembl Acc Id: ENST00000370924   ⟹   ENSP00000359962
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl171,005,854 - 71,047,808 (-)Ensembl
Ensembl Acc Id: ENST00000370931   ⟹   ENSP00000359969
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl170,852,353 - 71,047,788 (-)Ensembl
Ensembl Acc Id: ENST00000370932   ⟹   ENSP00000359970
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl170,852,353 - 71,047,808 (-)Ensembl
Ensembl Acc Id: ENST00000460330   ⟹   ENSP00000418073
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl170,852,573 - 71,047,633 (-)Ensembl
Ensembl Acc Id: ENST00000479353   ⟹   ENSP00000421583
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl170,852,442 - 71,047,808 (-)Ensembl
Ensembl Acc Id: ENST00000497146   ⟹   ENSP00000423561
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl170,852,442 - 71,047,788 (-)Ensembl
Ensembl Acc Id: ENST00000628037   ⟹   ENSP00000486617
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl170,852,353 - 71,047,808 (-)Ensembl
RefSeq Acc Id: NM_001126044   ⟹   NP_001119516
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38170,952,432 - 71,047,816 (-)NCBI
GRCh37171,318,036 - 71,513,497 (-)NCBI
HuRef169,428,653 - 69,623,748 (-)ENTREZGENE
CHM1_1171,533,463 - 71,628,842 (-)NCBI
T2T-CHM13v2.0170,830,462 - 70,925,810 (-)NCBI
Sequence:
RefSeq Acc Id: NM_198714   ⟹   NP_942007
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38170,852,358 - 71,047,816 (-)NCBI
GRCh37171,318,036 - 71,513,497 (-)NCBI
Build 36171,090,624 - 71,286,079 (-)NCBI Archive
HuRef169,428,653 - 69,623,748 (-)ENTREZGENE
CHM1_1171,432,956 - 71,628,842 (-)NCBI
T2T-CHM13v2.0170,730,386 - 70,925,810 (-)NCBI
Sequence:
RefSeq Acc Id: NM_198715   ⟹   NP_942008
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38171,005,860 - 71,047,816 (-)NCBI
GRCh37171,318,036 - 71,513,497 (-)NCBI
Build 36171,244,125 - 71,286,079 (-)NCBI Archive
HuRef169,428,653 - 69,623,748 (-)ENTREZGENE
CHM1_1171,586,885 - 71,628,842 (-)NCBI
T2T-CHM13v2.0170,883,862 - 70,925,810 (-)NCBI
Sequence:
RefSeq Acc Id: NM_198716   ⟹   NP_942009
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38170,852,358 - 71,047,816 (-)NCBI
GRCh37171,318,036 - 71,513,497 (-)NCBI
Build 36171,090,624 - 71,286,079 (-)NCBI Archive
HuRef169,428,653 - 69,623,748 (-)ENTREZGENE
CHM1_1171,432,956 - 71,628,842 (-)NCBI
T2T-CHM13v2.0170,730,386 - 70,925,810 (-)NCBI
Sequence:
RefSeq Acc Id: NM_198717   ⟹   NP_942010
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38170,852,358 - 71,047,816 (-)NCBI
GRCh37171,318,036 - 71,513,497 (-)NCBI
Build 36171,090,624 - 71,286,079 (-)NCBI Archive
HuRef169,428,653 - 69,623,748 (-)ENTREZGENE
CHM1_1171,432,956 - 71,628,842 (-)NCBI
T2T-CHM13v2.0170,730,386 - 70,925,810 (-)NCBI
Sequence:
RefSeq Acc Id: NM_198718   ⟹   NP_942011
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38170,952,432 - 71,047,816 (-)NCBI
GRCh37171,318,036 - 71,513,497 (-)NCBI
Build 36171,190,703 - 71,286,079 (-)NCBI Archive
HuRef169,428,653 - 69,623,748 (-)ENTREZGENE
CHM1_1171,533,463 - 71,628,842 (-)NCBI
T2T-CHM13v2.0170,830,462 - 70,925,810 (-)NCBI
Sequence:
RefSeq Acc Id: NM_198719   ⟹   NP_942012
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38170,970,782 - 71,047,816 (-)NCBI
GRCh37171,318,036 - 71,513,497 (-)NCBI
Build 36171,209,052 - 71,286,079 (-)NCBI Archive
HuRef169,428,653 - 69,623,748 (-)ENTREZGENE
CHM1_1171,551,811 - 71,628,842 (-)NCBI
T2T-CHM13v2.0170,848,811 - 70,925,810 (-)NCBI
Sequence:
RefSeq Acc Id: NR_028292
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38170,852,358 - 71,047,816 (-)NCBI
GRCh37171,318,036 - 71,513,497 (-)NCBI
HuRef169,428,653 - 69,623,748 (-)ENTREZGENE
CHM1_1171,432,956 - 71,628,842 (-)NCBI
T2T-CHM13v2.0170,730,386 - 70,925,810 (-)NCBI
Sequence:
RefSeq Acc Id: NR_028293
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38170,852,358 - 71,047,816 (-)NCBI
GRCh37171,318,036 - 71,513,497 (-)NCBI
HuRef169,428,653 - 69,623,748 (-)ENTREZGENE
CHM1_1171,432,956 - 71,628,842 (-)NCBI
T2T-CHM13v2.0170,730,386 - 70,925,810 (-)NCBI
Sequence:
RefSeq Acc Id: NR_028294
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38170,852,358 - 71,047,816 (-)NCBI
GRCh37171,318,036 - 71,513,497 (-)NCBI
HuRef169,428,653 - 69,623,748 (-)ENTREZGENE
CHM1_1171,432,956 - 71,628,842 (-)NCBI
T2T-CHM13v2.0170,730,386 - 70,925,810 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011541810   ⟹   XP_011540112
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38170,852,358 - 71,047,816 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054337808   ⟹   XP_054193783
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0170,730,386 - 70,925,810 (-)NCBI
RefSeq Acc Id: XR_008486118
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0170,730,386 - 70,925,810 (-)NCBI
RefSeq Acc Id: XR_946714
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38170,852,358 - 71,047,816 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001119516 (Get FASTA)   NCBI Sequence Viewer  
  NP_942007 (Get FASTA)   NCBI Sequence Viewer  
  NP_942008 (Get FASTA)   NCBI Sequence Viewer  
  NP_942009 (Get FASTA)   NCBI Sequence Viewer  
  NP_942010 (Get FASTA)   NCBI Sequence Viewer  
  NP_942011 (Get FASTA)   NCBI Sequence Viewer  
  NP_942012 (Get FASTA)   NCBI Sequence Viewer  
  XP_011540112 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193783 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA21130 (Get FASTA)   NCBI Sequence Viewer  
  AAA21131 (Get FASTA)   NCBI Sequence Viewer  
  AAA21132 (Get FASTA)   NCBI Sequence Viewer  
  AAA21133 (Get FASTA)   NCBI Sequence Viewer  
  AAA21134 (Get FASTA)   NCBI Sequence Viewer  
  AAA60076 (Get FASTA)   NCBI Sequence Viewer  
  AAA68191 (Get FASTA)   NCBI Sequence Viewer  
  AAA68192 (Get FASTA)   NCBI Sequence Viewer  
  AAA68193 (Get FASTA)   NCBI Sequence Viewer  
  AAB29854 (Get FASTA)   NCBI Sequence Viewer  
  AAB29855 (Get FASTA)   NCBI Sequence Viewer  
  AAB30208 (Get FASTA)   NCBI Sequence Viewer  
  AAC13372 (Get FASTA)   NCBI Sequence Viewer  
  AAC13373 (Get FASTA)   NCBI Sequence Viewer  
  AAC13374 (Get FASTA)   NCBI Sequence Viewer  
  AAD14026 (Get FASTA)   NCBI Sequence Viewer  
  AAH24229 (Get FASTA)   NCBI Sequence Viewer  
  AAI18579 (Get FASTA)   NCBI Sequence Viewer  
  AAI18660 (Get FASTA)   NCBI Sequence Viewer  
  AAQ90021 (Get FASTA)   NCBI Sequence Viewer  
  AAR07903 (Get FASTA)   NCBI Sequence Viewer  
  ABS57464 (Get FASTA)   NCBI Sequence Viewer  
  BAA07416 (Get FASTA)   NCBI Sequence Viewer  
  BAA07417 (Get FASTA)   NCBI Sequence Viewer  
  BAA07418 (Get FASTA)   NCBI Sequence Viewer  
  BAA07419 (Get FASTA)   NCBI Sequence Viewer  
  BAA07420 (Get FASTA)   NCBI Sequence Viewer  
  BAA19949 (Get FASTA)   NCBI Sequence Viewer  
  BAA19950 (Get FASTA)   NCBI Sequence Viewer  
  BAA19951 (Get FASTA)   NCBI Sequence Viewer  
  BAA19952 (Get FASTA)   NCBI Sequence Viewer  
  BAA19953 (Get FASTA)   NCBI Sequence Viewer  
  BAA19954 (Get FASTA)   NCBI Sequence Viewer  
  BAA19955 (Get FASTA)   NCBI Sequence Viewer  
  BAA19956 (Get FASTA)   NCBI Sequence Viewer  
  BAA19957 (Get FASTA)   NCBI Sequence Viewer  
  BAA19958 (Get FASTA)   NCBI Sequence Viewer  
  BAA19959 (Get FASTA)   NCBI Sequence Viewer  
  BAF83323 (Get FASTA)   NCBI Sequence Viewer  
  BAF98716 (Get FASTA)   NCBI Sequence Viewer  
  BAG70295 (Get FASTA)   NCBI Sequence Viewer  
  CAA58737 (Get FASTA)   NCBI Sequence Viewer  
  CAA58738 (Get FASTA)   NCBI Sequence Viewer  
  CAA58739 (Get FASTA)   NCBI Sequence Viewer  
  CAA58740 (Get FASTA)   NCBI Sequence Viewer  
  CAA58741 (Get FASTA)   NCBI Sequence Viewer  
  CAA58742 (Get FASTA)   NCBI Sequence Viewer  
  CAA58743 (Get FASTA)   NCBI Sequence Viewer  
  CAE83503 (Get FASTA)   NCBI Sequence Viewer  
  CAE83507 (Get FASTA)   NCBI Sequence Viewer  
  CAE83508 (Get FASTA)   NCBI Sequence Viewer  
  CAJ33690 (Get FASTA)   NCBI Sequence Viewer  
  CCF77027 (Get FASTA)   NCBI Sequence Viewer  
  CCF77028 (Get FASTA)   NCBI Sequence Viewer  
  CCF77029 (Get FASTA)   NCBI Sequence Viewer  
  CCF77030 (Get FASTA)   NCBI Sequence Viewer  
  CCF77031 (Get FASTA)   NCBI Sequence Viewer  
  CCF77032 (Get FASTA)   NCBI Sequence Viewer  
  CCF77033 (Get FASTA)   NCBI Sequence Viewer  
  CCF77034 (Get FASTA)   NCBI Sequence Viewer  
  CCF77035 (Get FASTA)   NCBI Sequence Viewer  
  CCF77036 (Get FASTA)   NCBI Sequence Viewer  
  EAX06436 (Get FASTA)   NCBI Sequence Viewer  
  EAX06437 (Get FASTA)   NCBI Sequence Viewer  
  EAX06438 (Get FASTA)   NCBI Sequence Viewer  
  EAX06439 (Get FASTA)   NCBI Sequence Viewer  
  EAX06440 (Get FASTA)   NCBI Sequence Viewer  
  EAX06441 (Get FASTA)   NCBI Sequence Viewer  
  EAX06442 (Get FASTA)   NCBI Sequence Viewer  
  EAX06443 (Get FASTA)   NCBI Sequence Viewer  
  EAX06444 (Get FASTA)   NCBI Sequence Viewer  
  EAX06445 (Get FASTA)   NCBI Sequence Viewer  
  EAX06446 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000302313
  ENSP00000302313.5
  ENSP00000349003
  ENSP00000349003.4
  ENSP00000359962
  ENSP00000359962.3
  ENSP00000359969
  ENSP00000359969.3
  ENSP00000418073
  ENSP00000418073.1
  ENSP00000421583.1
  ENSP00000423561.1
  ENSP00000424340.1
  ENSP00000486617
  ENSP00000486617.1
GenBank Protein P43115 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_942010   ⟸   NM_198717
- Peptide Label: isoform 7
- UniProtKB: Q6TTN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_942009   ⟸   NM_198716
- Peptide Label: isoform 6
- UniProtKB: Q6TTN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_942007   ⟸   NM_198714
- Peptide Label: isoform 4
- UniProtKB: Q5CZ63 (UniProtKB/Swiss-Prot),   Q5CZ62 (UniProtKB/Swiss-Prot),   Q5CZ61 (UniProtKB/Swiss-Prot),   Q5CZ59 (UniProtKB/Swiss-Prot),   Q16546 (UniProtKB/Swiss-Prot),   Q147X8 (UniProtKB/Swiss-Prot),   Q12945 (UniProtKB/Swiss-Prot),   Q12944 (UniProtKB/Swiss-Prot),   Q12943 (UniProtKB/Swiss-Prot),   O00326 (UniProtKB/Swiss-Prot),   B5BUP5 (UniProtKB/Swiss-Prot),   B1AK19 (UniProtKB/Swiss-Prot),   B0AZN4 (UniProtKB/Swiss-Prot),   Q5CZ64 (UniProtKB/Swiss-Prot),   P43115 (UniProtKB/Swiss-Prot),   A8K3L9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_942011   ⟸   NM_198718
- Peptide Label: isoform 8
- UniProtKB: Q6TTN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001119516   ⟸   NM_001126044
- Peptide Label: isoform 4
- UniProtKB: Q5CZ63 (UniProtKB/Swiss-Prot),   Q5CZ62 (UniProtKB/Swiss-Prot),   Q5CZ61 (UniProtKB/Swiss-Prot),   Q5CZ59 (UniProtKB/Swiss-Prot),   Q16546 (UniProtKB/Swiss-Prot),   Q147X8 (UniProtKB/Swiss-Prot),   Q12945 (UniProtKB/Swiss-Prot),   Q12944 (UniProtKB/Swiss-Prot),   Q12943 (UniProtKB/Swiss-Prot),   O00326 (UniProtKB/Swiss-Prot),   B5BUP5 (UniProtKB/Swiss-Prot),   B1AK19 (UniProtKB/Swiss-Prot),   B0AZN4 (UniProtKB/Swiss-Prot),   Q5CZ64 (UniProtKB/Swiss-Prot),   P43115 (UniProtKB/Swiss-Prot),   A8K3L9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_942012   ⟸   NM_198719
- Peptide Label: isoform 4
- UniProtKB: Q5CZ63 (UniProtKB/Swiss-Prot),   Q5CZ62 (UniProtKB/Swiss-Prot),   Q5CZ61 (UniProtKB/Swiss-Prot),   Q5CZ59 (UniProtKB/Swiss-Prot),   Q16546 (UniProtKB/Swiss-Prot),   Q147X8 (UniProtKB/Swiss-Prot),   Q12945 (UniProtKB/Swiss-Prot),   Q12944 (UniProtKB/Swiss-Prot),   Q12943 (UniProtKB/Swiss-Prot),   O00326 (UniProtKB/Swiss-Prot),   B5BUP5 (UniProtKB/Swiss-Prot),   B1AK19 (UniProtKB/Swiss-Prot),   B0AZN4 (UniProtKB/Swiss-Prot),   Q5CZ64 (UniProtKB/Swiss-Prot),   P43115 (UniProtKB/Swiss-Prot),   A8K3L9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_942008   ⟸   NM_198715
- Peptide Label: isoform 5
- UniProtKB: Q6TTN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011540112   ⟸   XM_011541810
- Peptide Label: isoform X1
- UniProtKB: A8K3L9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000302313   ⟸   ENST00000306666
Ensembl Acc Id: ENSP00000359962   ⟸   ENST00000370924
Ensembl Acc Id: ENSP00000359969   ⟸   ENST00000370931
Ensembl Acc Id: ENSP00000359970   ⟸   ENST00000370932
Ensembl Acc Id: ENSP00000421583   ⟸   ENST00000479353
Ensembl Acc Id: ENSP00000424340   ⟸   ENST00000361210
Ensembl Acc Id: ENSP00000486617   ⟸   ENST00000628037
Ensembl Acc Id: ENSP00000423561   ⟸   ENST00000497146
Ensembl Acc Id: ENSP00000280208   ⟸   ENST00000351052
Ensembl Acc Id: ENSP00000346624   ⟸   ENST00000354608
Ensembl Acc Id: ENSP00000349003   ⟸   ENST00000356595
Ensembl Acc Id: ENSP00000418073   ⟸   ENST00000460330
RefSeq Acc Id: XP_054193783   ⟸   XM_054337808
- Peptide Label: isoform X1
- UniProtKB: A8K3L9 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P43115-F1-model_v2 AlphaFold P43115 1-390 view protein structure

Promoters
RGD ID:6855880
Promoter ID:EPDNEW_H1105
Type:multiple initiation site
Name:PTGER3_1
Description:prostaglandin E receptor 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38171,047,811 - 71,047,871EPDNEW
RGD ID:6786340
Promoter ID:HG_KWN:3232
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   K562
Transcripts:ENST00000351052,   ENST00000354608,   ENST00000370932,   ENST00000370934,   NM_001126044,   NM_198714,   NM_198715,   NM_198716,   NM_198717,   NM_198718,   NM_198719,   NR_028292,   NR_028293,   NR_028294,   UC001DFM.1,   UC001DFN.2,   UC009WBM.1,   UC009WBN.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36171,285,586 - 71,286,102 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:9595 AgrOrtholog
COSMIC PTGER3 COSMIC
Ensembl Genes ENSG00000050628 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000306666 ENTREZGENE
  ENST00000306666.10 UniProtKB/Swiss-Prot
  ENST00000356595 ENTREZGENE
  ENST00000356595.8 UniProtKB/Swiss-Prot
  ENST00000361210 ENTREZGENE
  ENST00000361210.6 UniProtKB/TrEMBL
  ENST00000370924 ENTREZGENE
  ENST00000370924.5 UniProtKB/Swiss-Prot
  ENST00000370931 ENTREZGENE
  ENST00000370931.7 UniProtKB/Swiss-Prot
  ENST00000460330 ENTREZGENE
  ENST00000460330.5 UniProtKB/Swiss-Prot
  ENST00000479353 ENTREZGENE
  ENST00000479353.5 UniProtKB/Swiss-Prot
  ENST00000497146 ENTREZGENE
  ENST00000497146.5 UniProtKB/TrEMBL
  ENST00000628037 ENTREZGENE
  ENST00000628037.2 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000050628 GTEx
HGNC ID HGNC:9595 ENTREZGENE
Human Proteome Map PTGER3 Human Proteome Map
InterPro EP3_rcpt_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prostanoid_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prostglndn_DP_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prostglndn_EP3_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:5733 UniProtKB/Swiss-Prot
NCBI Gene 5733 ENTREZGENE
OMIM 176806 OMIM
PANTHER PTHR11866 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11866:SF10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA288 PharmGKB
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROSTAGLNDNR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROSTANOIDR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRSTNOIDE32R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRSTNOIDEP3R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0B4J204_HUMAN UniProtKB/TrEMBL
  A8K3L9 ENTREZGENE, UniProtKB/TrEMBL
  B0AZN4 ENTREZGENE
  B1AK19 ENTREZGENE
  B2KKV4_HUMAN UniProtKB/TrEMBL
  B5BUP5 ENTREZGENE
  O00325_HUMAN UniProtKB/TrEMBL
  O00326 ENTREZGENE
  P43115 ENTREZGENE, UniProtKB/Swiss-Prot
  Q12943 ENTREZGENE
  Q12944 ENTREZGENE
  Q12945 ENTREZGENE
  Q147U0_HUMAN UniProtKB/TrEMBL
  Q147X8 ENTREZGENE
  Q16546 ENTREZGENE
  Q5CZ59 ENTREZGENE
  Q5CZ61 ENTREZGENE
  Q5CZ62 ENTREZGENE
  Q5CZ63 ENTREZGENE
  Q5CZ64 ENTREZGENE
  Q6TTN3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B0AZN4 UniProtKB/Swiss-Prot
  B1AK19 UniProtKB/Swiss-Prot
  B5BUP5 UniProtKB/Swiss-Prot
  O00326 UniProtKB/Swiss-Prot
  Q12943 UniProtKB/Swiss-Prot
  Q12944 UniProtKB/Swiss-Prot
  Q12945 UniProtKB/Swiss-Prot
  Q147X8 UniProtKB/Swiss-Prot
  Q16546 UniProtKB/Swiss-Prot
  Q5CZ59 UniProtKB/Swiss-Prot
  Q5CZ61 UniProtKB/Swiss-Prot
  Q5CZ62 UniProtKB/Swiss-Prot
  Q5CZ63 UniProtKB/Swiss-Prot
  Q5CZ64 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 PTGER3  prostaglandin E receptor 3    prostaglandin E receptor 3 (subtype EP3)  Symbol and/or name change 5135510 APPROVED