Slc36a2 (solute carrier family 36 (proton/amino acid symporter), member 2) - Rat Genome Database

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Gene: Slc36a2 (solute carrier family 36 (proton/amino acid symporter), member 2) Mus musculus
Analyze
Symbol: Slc36a2
Name: solute carrier family 36 (proton/amino acid symporter), member 2
RGD ID: 731332
MGI Page MGI
Description: Enables amino acid transmembrane transporter activity. Acts upstream of or within amino acid transport and proton transmembrane transport. Located in endoplasmic reticulum membrane; plasma membrane; and recycling endosome membrane. Is expressed in several structures, including ear; face; heart; nervous system; and skeleton. Human ortholog(s) of this gene implicated in iminoglycinuria. Orthologous to human SLC36A2 (solute carrier family 36 member 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A530067G19Rik; PA; PAT2; proton-coupled amino acid transporter 2; proton/amino acid transporter 2; solute carrier family 36 member 2; Tram; Tramd1; tramdorin 1 (transmembrane domain rich protein); tramdorin-1; transmembrane domain rich protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391155,049,294 - 55,075,924 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1155,049,296 - 55,075,903 (-)EnsemblGRCm39 Ensembl
GRCm381155,158,468 - 55,185,099 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1155,158,470 - 55,185,077 (-)EnsemblGRCm38mm10GRCm38
MGSCv371154,971,970 - 54,998,579 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361155,001,915 - 55,028,500 (-)NCBIMGSCv36mm8
Celera1159,748,113 - 59,775,172 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Identification of genes that are downregulated in the absence of the POU domain transcription factor pou3f1 (Oct-6, Tst-1, SCIP) in sciatic nerve. Bermingham JR Jr, etal., J Neurosci 2002 Dec 1;22(23):10217-31.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11959859   PMID:12415263   PMID:12477932   PMID:12809675   PMID:14600155   PMID:14681479   PMID:15058382  
PMID:15291811   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16965813   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22711289   PMID:25080478   PMID:31202927   PMID:35733999  


Genomics

Comparative Map Data
Slc36a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391155,049,294 - 55,075,924 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1155,049,296 - 55,075,903 (-)EnsemblGRCm39 Ensembl
GRCm381155,158,468 - 55,185,099 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1155,158,470 - 55,185,077 (-)EnsemblGRCm38mm10GRCm38
MGSCv371154,971,970 - 54,998,579 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361155,001,915 - 55,028,500 (-)NCBIMGSCv36mm8
Celera1159,748,113 - 59,775,172 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.16NCBI
SLC36A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385151,314,972 - 151,347,559 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5151,314,972 - 151,347,590 (-)EnsemblGRCh38hg38GRCh38
GRCh375150,694,533 - 150,727,120 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365150,674,732 - 150,707,312 (-)NCBINCBI36Build 36hg18NCBI36
Build 345150,674,732 - 150,707,312NCBI
Celera5146,775,913 - 146,808,530 (-)NCBICelera
Cytogenetic Map5q33.1NCBI
HuRef5145,839,925 - 145,872,555 (-)NCBIHuRef
CHM1_15150,127,312 - 150,159,946 (-)NCBICHM1_1
T2T-CHM13v2.05151,853,922 - 151,886,528 (-)NCBIT2T-CHM13v2.0
Slc36a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81039,778,667 - 39,806,781 (-)NCBIGRCr8
mRatBN7.21039,278,002 - 39,306,082 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1039,278,046 - 39,306,082 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1043,964,963 - 43,992,957 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01043,455,046 - 43,483,042 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01038,958,748 - 38,986,750 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01040,497,184 - 40,525,033 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1040,496,622 - 40,525,008 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01040,335,810 - 40,363,646 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41040,562,983 - 40,590,958 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11040,576,605 - 40,604,581 (-)NCBI
Celera1038,615,534 - 38,643,484 (-)NCBICelera
Cytogenetic Map10q22NCBI
Slc36a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554082,363,418 - 2,393,904 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554082,363,416 - 2,392,210 (+)NCBIChiLan1.0ChiLan1.0
SLC36A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24146,543,920 - 146,579,487 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15144,683,465 - 144,719,032 (-)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl5152,744,831 - 152,775,431 (-)Ensemblpanpan1.1panPan2
SLC36A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1457,933,506 - 57,959,359 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl457,933,453 - 57,992,587 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha457,753,300 - 57,777,996 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0458,375,008 - 58,399,684 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl458,374,921 - 58,431,913 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1458,192,675 - 58,217,353 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0458,291,078 - 58,315,788 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0458,794,930 - 58,819,608 (+)NCBIUU_Cfam_GSD_1.0
Slc36a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213112,845,964 - 112,881,043 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651511,295,451 - 11,327,702 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651511,295,315 - 11,330,463 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC36A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1671,618,797 - 71,689,218 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11671,661,946 - 71,689,464 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21677,826,126 - 77,921,625 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC36A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12353,870,540 - 53,903,773 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2353,870,539 - 53,903,523 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603423,809,264 - 23,842,474 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc36a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473341,201,100 - 41,228,600 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473341,201,065 - 41,229,876 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc36a2
1022 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:343
Count of miRNA genes:256
Interacting mature miRNAs:287
Transcripts:ENSMUST00000039305, ENSMUST00000125560
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse

Markers in Region
Slc36a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B1.3UniSTS
cM Map11 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000039305   ⟹   ENSMUSP00000045613
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1155,049,296 - 55,075,903 (-)Ensembl
GRCm38.p6 Ensembl1155,158,470 - 55,185,077 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125560
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1155,058,830 - 55,075,903 (-)Ensembl
GRCm38.p6 Ensembl1155,168,004 - 55,185,077 (-)Ensembl
RefSeq Acc Id: NM_153170   ⟹   NP_694810
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391155,049,294 - 55,075,903 (-)NCBI
GRCm381155,158,468 - 55,185,077 (-)NCBI
MGSCv371154,971,970 - 54,998,579 (-)RGD
Celera1159,748,113 - 59,775,172 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533324   ⟹   XP_006533387
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391155,049,311 - 55,075,924 (-)NCBI
GRCm381155,158,485 - 55,185,099 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006533325   ⟹   XP_006533388
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391155,049,311 - 55,075,922 (-)NCBI
GRCm381155,158,485 - 55,185,097 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246005   ⟹   XP_030101865
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391155,049,311 - 55,075,595 (-)NCBI
GRCm381155,158,485 - 55,184,770 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_694810   ⟸   NM_153170
- UniProtKB: Q8BUB0 (UniProtKB/Swiss-Prot),   Q8JZP1 (UniProtKB/Swiss-Prot),   Q8BHK3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533387   ⟸   XM_006533324
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006533388   ⟸   XM_006533325
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030101865   ⟸   XM_030246005
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000045613   ⟸   ENSMUST00000039305

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BHK3-F1-model_v2 AlphaFold Q8BHK3 1-478 view protein structure

Promoters
RGD ID:8674692
Promoter ID:EPDNEW_M15377
Type:initiation region
Name:Slc36a2_1
Description:Mus musculus solute carrier family 36 (proton/amino acid symporter),member 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381155,185,041 - 55,185,101EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1891430 AgrOrtholog
Ensembl Genes ENSMUSG00000020264 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000039305 ENTREZGENE
  ENSMUST00000039305.6 UniProtKB/Swiss-Prot
InterPro AA_transpt_TM UniProtKB/Swiss-Prot
KEGG Report mmu:246049 UniProtKB/Swiss-Prot
MGD MGI:1891430 ENTREZGENE
NCBI Gene 246049 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/Swiss-Prot
  PROTON-COUPLED AMINO ACID TRANSPORTER 2 UniProtKB/Swiss-Prot
Pfam Aa_trans UniProtKB/Swiss-Prot
PhenoGen Slc36a2 PhenoGen
UniProt Q8BHK3 ENTREZGENE
  Q8BUB0 ENTREZGENE
  Q8JZP1 ENTREZGENE
  S36A2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BUB0 UniProtKB/Swiss-Prot
  Q8JZP1 UniProtKB/Swiss-Prot