Rcan1 (regulator of calcineurin 1) - Rat Genome Database

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Gene: Rcan1 (regulator of calcineurin 1) Mus musculus
Analyze
Symbol: Rcan1
Name: regulator of calcineurin 1
RGD ID: 731330
MGI Page MGI
Description: Predicted to enable calcium-dependent protein serine/threonine phosphatase regulator activity and identical protein binding activity. Acts upstream of or within several processes, including calcineurin-NFAT signaling cascade; response to ischemia; and short-term memory. Located in cytoplasm and nucleus. Is expressed in several structures, including alimentary system; genitourinary system; heart; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human RCAN1 (regulator of calcineurin 1); PARTICIPATES IN calcineurin signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2410048A02Rik; AA408855; ADAP; Adapt78; AI429645; AL024459; AV028423; calcineurin inhibitor; calcipressin 1; calcipressin-1; CALP1L; CS; CSP1; Down syndrome critical region homolog 1; down syndrome critical region protein 1 homolog; Dsc; DSC1; Dscr1; MCI; MCIP1; myocyte-enriched calcineurin interactin protein 1; myocyte-enriched calcineurin-interacting protein 1; RCN1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391692,188,839 - 92,263,057 (-)NCBIGRCm39mm39
GRCm39 Ensembl1692,188,841 - 92,267,755 (-)Ensembl
GRCm381692,391,951 - 92,466,169 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1692,391,953 - 92,470,867 (-)EnsemblGRCm38mm10GRCm38
MGSCv371692,392,198 - 92,466,391 (-)NCBIGRCm37mm9NCBIm37
MGSCv361692,280,814 - 92,288,917 (-)NCBImm8
Celera1693,474,521 - 93,548,716 (-)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1653.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
15-acetyldeoxynivalenol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (ISO)
Calcimycin  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (EXP)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (ISO)
dichloroacetic acid  (EXP)
dicrotophos  (ISO)
dipyridamole  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
etoposide  (ISO)
ferric oxide  (EXP)
folic acid  (EXP)
furan  (EXP,ISO)
geldanamycin  (ISO)
geraniol  (ISO)
hydrogen peroxide  (ISO)
ionomycin  (ISO)
L-ascorbic acid  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
lithium chloride  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methotrexate  (EXP)
methyl methanesulfonate  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-methylformamide  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
nimesulide  (ISO)
oxaliplatin  (ISO)
oxycodone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
peroxynitrous acid  (ISO)
phenethyl caffeate  (ISO)
phenformin  (ISO)
phenobarbital  (EXP)
phenylarsine oxide  (ISO)
phenylephrine  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (EXP)
propiconazole  (EXP)
resveratrol  (EXP,ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
sirolimus  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
succimer  (EXP)
sunitinib  (ISO)
tamoxifen  (EXP,ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
theophylline  (ISO)
topotecan  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
Triptolide  (EXP)
troglitazone  (EXP)
trovafloxacin  (EXP)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)
valsartan  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:10349636   PMID:10722714   PMID:10756093   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11080588   PMID:11231093   PMID:12477932   PMID:12520002  
PMID:12809556   PMID:12925851   PMID:14610273   PMID:14681479   PMID:14738882   PMID:15489334   PMID:15782199   PMID:15866158   PMID:15906378   PMID:16024798   PMID:16131541   PMID:16141072  
PMID:16141073   PMID:16198305   PMID:16554754   PMID:16648267   PMID:17198697   PMID:17341486   PMID:17595344   PMID:17693409   PMID:17767500   PMID:17826176   PMID:17910944   PMID:18045910  
PMID:18180251   PMID:18294449   PMID:18319259   PMID:18455125   PMID:18485347   PMID:19124655   PMID:19136967   PMID:19458618   PMID:19620774   PMID:19926569   PMID:20371871   PMID:20438729  
PMID:21073546   PMID:21364922   PMID:21677750   PMID:21741935   PMID:21873635   PMID:21930771   PMID:21947295   PMID:21965663   PMID:22397398   PMID:22511596   PMID:22546913   PMID:22863780  
PMID:22864830   PMID:23011918   PMID:23096997   PMID:23118980   PMID:23134420   PMID:23144708   PMID:23589609   PMID:23843306   PMID:23954784   PMID:24041692   PMID:24051307   PMID:24127415  
PMID:24155299   PMID:24218457   PMID:24352425   PMID:24838101   PMID:25009293   PMID:25100642   PMID:25193101   PMID:25194880   PMID:25261685   PMID:25556111   PMID:25783055   PMID:25799055  
PMID:26157140   PMID:26430214   PMID:26658127   PMID:27185837   PMID:27195491   PMID:27449908   PMID:27480124   PMID:27734335   PMID:27917924   PMID:28172997   PMID:28712932   PMID:29309904  
PMID:29362227   PMID:29799862   PMID:30139658   PMID:30366682   PMID:30389725   PMID:30442942   PMID:30718468   PMID:31285763   PMID:31822118   PMID:32325033   PMID:32499640   PMID:32787520  
PMID:32896034   PMID:33104163   PMID:33773996  


Genomics

Comparative Map Data
Rcan1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391692,188,839 - 92,263,057 (-)NCBIGRCm39mm39
GRCm39 Ensembl1692,188,841 - 92,267,755 (-)Ensembl
GRCm381692,391,951 - 92,466,169 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1692,391,953 - 92,470,867 (-)EnsemblGRCm38mm10GRCm38
MGSCv371692,392,198 - 92,466,391 (-)NCBIGRCm37mm9NCBIm37
MGSCv361692,280,814 - 92,288,917 (-)NCBImm8
Celera1693,474,521 - 93,548,716 (-)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1653.6NCBI
RCAN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2134,513,142 - 34,615,113 (-)EnsemblGRCh38hg38GRCh38
GRCh382134,516,442 - 34,615,123 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372135,888,740 - 35,987,412 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362134,810,652 - 34,909,252 (-)NCBINCBI36hg18NCBI36
Build 342134,810,655 - 34,821,131NCBI
Celera2121,088,350 - 21,186,950 (-)NCBI
Cytogenetic Map21q22.12ENTREZGENE
HuRef2121,367,653 - 21,466,258 (-)NCBIHuRef
CHM1_12135,451,030 - 35,549,660 (-)NCBICHM1_1
Rcan1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21131,622,208 - 31,702,150 (-)NCBI
Rnor_6.0 Ensembl1132,539,683 - 32,550,539 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01132,539,689 - 32,620,274 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01136,145,269 - 36,224,657 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41132,386,576 - 32,408,850 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11132,442,819 - 32,465,093 (-)NCBI
Celera1131,275,905 - 31,284,458 (-)NCBICelera
Cytogenetic Map11q11NCBI
Rcan1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540733,873,383 - 33,951,498 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540733,873,427 - 33,951,762 (-)NCBIChiLan1.0ChiLan1.0
RCAN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12134,256,757 - 34,266,895 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2134,258,355 - 34,267,025 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02120,889,123 - 20,987,964 (-)NCBIMhudiblu_PPA_v0panPan3
RCAN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13129,908,046 - 30,002,412 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3129,909,388 - 30,002,418 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3129,007,504 - 29,101,691 (-)NCBI
ROS_Cfam_1.03129,209,212 - 29,303,372 (-)NCBI
UMICH_Zoey_3.13129,075,502 - 29,169,521 (-)NCBI
UNSW_CanFamBas_1.03129,089,892 - 29,184,228 (-)NCBI
UU_Cfam_GSD_1.03129,580,718 - 29,674,857 (-)NCBI
Rcan1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497129,517,567 - 29,599,664 (-)NCBI
SpeTri2.0NW_0049365007,942,099 - 7,950,256 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RCAN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13198,102,098 - 198,205,629 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113198,106,256 - 198,205,727 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213207,934,802 - 208,034,246 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RCAN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1278,561,212 - 78,658,023 (-)NCBI
ChlSab1.1 Ensembl278,562,795 - 78,571,498 (-)Ensembl
Vero_WHO_p1.0NW_0236660546,377,519 - 6,475,296 (-)NCBI
Rcan1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474522,683,600 - 22,764,735 (-)NCBI

Position Markers
AV028423  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16C4UniSTS
cM Map1662.0UniSTS
Whitehead/MRC_RH16979.77UniSTS
Dscr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16C4UniSTS
cM Map1662.0UniSTS
AI429645  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381692,392,015 - 92,392,243UniSTSGRCm38
MGSCv371692,392,260 - 92,392,488UniSTSGRCm37
Celera1693,474,583 - 93,474,811UniSTS
Cytogenetic Map16C4UniSTS
cM Map1662.0UniSTS
Whitehead/MRC_RH16974.86UniSTS
RH124780  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381692,392,119 - 92,392,317UniSTSGRCm38
MGSCv371692,392,364 - 92,392,562UniSTSGRCm37
Celera1693,474,687 - 93,474,885UniSTS
Cytogenetic Map16C4UniSTS
cM Map1662.0UniSTS
RH125551  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381692,392,526 - 92,392,720UniSTSGRCm38
MGSCv371692,392,771 - 92,392,965UniSTSGRCm37
Celera1693,475,094 - 93,475,288UniSTS
Cytogenetic Map16C4UniSTS
cM Map1662.0UniSTS
Rcan1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16C4UniSTS
cM Map1662.0UniSTS
Rcan1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16C4UniSTS
Rcan1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16C4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163562627392776120Mouse
1301125Sluc27_msusceptibility to lung cancer 27 (mouse)Not determined166181175695811876Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6318975897189758Mouse
1300928Etia_methanol induced activation (mouse)Not determined166351701997517128Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166353044897530584Mouse
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166880383498207768Mouse
1301032Tauph_mtau phosphorylation (mouse)Not determined166927924498207768Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166933072398207768Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166933072398207768Mouse
11049574Lmr18a_mleishmaniasis resistance 18a (mouse)166933072398207768Mouse
11522753Cocia19_mcocaine-induced activity, QTL 19 (mouse)166945759498207768Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167058336498207768Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir122mmu-miR-122-5pMirtarbaseexternal_infoLuciferase reporter assay//Reporter assayFunctional MTI19487572

Predicted Target Of
Summary Value
Count of predictions:976
Count of miRNA genes:374
Interacting mature miRNAs:414
Transcripts:ENSMUST00000023672, ENSMUST00000060005
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC162305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC174448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF237789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF237790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF260717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF263239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF263240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF282255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY325904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY276032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY454038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000023672   ⟹   ENSMUSP00000023672
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1692,391,955 - 92,400,077 (-)Ensembl
RefSeq Acc Id: ENSMUST00000060005   ⟹   ENSMUSP00000060394
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1692,391,953 - 92,466,146 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231410   ⟹   ENSMUSP00000156110
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1692,391,959 - 92,458,475 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231813   ⟹   ENSMUSP00000156351
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1692,392,003 - 92,393,632 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232197   ⟹   ENSMUSP00000155863
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1692,392,510 - 92,470,867 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232239   ⟹   ENSMUSP00000156053
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1692,391,955 - 92,466,143 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232457
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1692,398,674 - 92,399,978 (-)Ensembl
RefSeq Acc Id: NM_001081549   ⟹   NP_001075018
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391692,188,839 - 92,263,057 (-)NCBI
GRCm381692,391,951 - 92,466,169 (-)NCBI
MGSCv371692,392,198 - 92,466,391 (-)RGD
Celera1693,474,519 - 93,548,739 (-)NCBI
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_019466   ⟹   NP_062339
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391692,188,839 - 92,196,966 (-)NCBI
GRCm381692,391,951 - 92,400,078 (-)NCBI
MGSCv371692,392,198 - 92,466,391 (-)RGD
Celera1693,474,519 - 93,548,739 (-)NCBI
cM Map16 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001075018   ⟸   NM_001081549
- Peptide Label: isoform 1
- UniProtKB: Q7TNY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_062339   ⟸   NM_019466
- Peptide Label: isoform 2
- UniProtKB: Q9JHG6 (UniProtKB/Swiss-Prot),   Q542V6 (UniProtKB/TrEMBL),   Q7TNY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000060394   ⟸   ENSMUST00000060005
RefSeq Acc Id: ENSMUSP00000156351   ⟸   ENSMUST00000231813
RefSeq Acc Id: ENSMUSP00000156110   ⟸   ENSMUST00000231410
RefSeq Acc Id: ENSMUSP00000156053   ⟸   ENSMUST00000232239
RefSeq Acc Id: ENSMUSP00000155863   ⟸   ENSMUST00000232197
RefSeq Acc Id: ENSMUSP00000023672   ⟸   ENSMUST00000023672

Promoters
RGD ID:6847321
Promoter ID:MM_ACW:21271
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:RCAN1.ESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361692,393,146 - 92,393,646 (-)MPROMDB
RGD ID:6827411
Promoter ID:MM_KWN:21755
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_019466
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361692,400,026 - 92,400,526 (-)MPROMDB
RGD ID:13674478
Promoter ID:EPDNEW_M21388
Type:single initiation site
Name:Rcan1_1
Description:Mus musculus regulator of calcineurin 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21389  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381692,400,075 - 92,400,135EPDNEW
RGD ID:13674480
Promoter ID:EPDNEW_M21389
Type:initiation region
Name:Rcan1_2
Description:Mus musculus regulator of calcineurin 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21388  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381692,466,139 - 92,466,199EPDNEW
RGD ID:6827409
Promoter ID:MM_KWN:21756
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:NM_001081549
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361692,466,276 - 92,466,792 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1890564 AgrOrtholog
Ensembl Genes ENSMUSG00000022951 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000023672 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000060394 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000155863 UniProtKB/Swiss-Prot
  ENSMUSP00000156053 UniProtKB/Swiss-Prot
  ENSMUSP00000156110 UniProtKB/Swiss-Prot
  ENSMUSP00000156351 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000023672 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000060005 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000231410 UniProtKB/Swiss-Prot
  ENSMUST00000231813 UniProtKB/TrEMBL
  ENSMUST00000232197 UniProtKB/Swiss-Prot
  ENSMUST00000232239 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Calcipressin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RCAN1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RCAN1_RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54720 UniProtKB/Swiss-Prot
MGD MGI:1890564 ENTREZGENE
NCBI Gene 54720 ENTREZGENE
PANTHER PTHR10300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10300:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Calcipressin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rcan1 PhenoGen
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A338P7E2_MOUSE UniProtKB/TrEMBL
  Q542V6 ENTREZGENE, UniProtKB/TrEMBL
  Q7TNY3 ENTREZGENE
  Q9JHG6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q7TNY3 UniProtKB/Swiss-Prot
  Q91WQ4 UniProtKB/Swiss-Prot
  Q9JK50 UniProtKB/Swiss-Prot
  Q9JK51 UniProtKB/Swiss-Prot
  Q9JKK2 UniProtKB/Swiss-Prot
  Q9JKK3 UniProtKB/Swiss-Prot