Slc8a1 (solute carrier family 8 (sodium/calcium exchanger), member 1) - Rat Genome Database

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Gene: Slc8a1 (solute carrier family 8 (sodium/calcium exchanger), member 1) Mus musculus
Analyze
Symbol: Slc8a1
Name: solute carrier family 8 (sodium/calcium exchanger), member 1
RGD ID: 731022
MGI Page MGI
Description: Enables ankyrin binding activity; calcium:sodium antiporter activity; and transmembrane transporter binding activity. Involved in several processes, including cellular response to caffeine; metal ion transport; and vascular associated smooth muscle contraction. Acts upstream of or within several processes, including cardiac muscle contraction; embryonic organ development; and metal ion transport. Located in several cellular components, including T-tubule; basolateral plasma membrane; and postsynaptic density. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; heart; and nose. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human SLC8A1 (solute carrier family 8 member A1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI852629; AV344025; D930008O12Rik; MGC90693; Na(+)/Ca(2+)-exchange protein 1; Na/Ca exchanger; Ncx; Ncx1; sodium/calcium exchanger 1; sodium/calcium exchanger isoform NaCa7; solute carrier family 8 member 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391781,680,534 - 82,045,816 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1781,680,534 - 82,045,806 (-)EnsemblGRCm39 Ensembl
GRCm381781,373,105 - 81,738,387 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1781,373,105 - 81,738,377 (-)EnsemblGRCm38mm10GRCm38
MGSCv371781,772,445 - 82,137,717 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361781,293,929 - 81,646,695 (-)NCBIMGSCv36mm8
Celera1785,706,575 - 86,071,957 (-)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1751.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-noradrenaline  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-[(2,3,4-trimethoxyphenyl)methyl]piperazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-phenylprop-2-enal  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-tert-Octylphenol  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
amiodarone  (ISO)
amitrole  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
aspartame  (EXP)
atrazine  (ISO)
barium(0)  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
benzo[e]pyrene  (ISO)
bepridil  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butanal  (ISO)
C60 fullerene  (ISO)
cadmium dichloride  (ISO)
calcitriol  (EXP)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
cefaloridine  (ISO)
CGP 52608  (ISO)
chrysene  (EXP)
cisplatin  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (ISO)
D-glucose  (ISO)
DDT  (EXP)
decabromodiphenyl ether  (ISO)
dextran sulfate  (EXP)
dichloroacetic acid  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
etoposide  (ISO)
flutamide  (EXP)
folic acid  (EXP)
FR900359  (ISO)
fructose  (EXP)
fulvestrant  (ISO)
geldanamycin  (ISO)
genistein  (EXP,ISO)
glucose  (ISO)
glycidol  (ISO)
isoprenaline  (EXP,ISO)
lipopolysaccharide  (ISO)
maneb  (EXP)
methapyrilene  (ISO)
methimazole  (ISO)
monosodium L-glutamate  (EXP)
nickel atom  (ISO)
O-methyleugenol  (ISO)
ouabain  (EXP,ISO)
ozone  (ISO)
p-tert-Amylphenol  (EXP)
paracetamol  (ISO)
paraquat  (EXP)
PCB138  (EXP)
pentanal  (ISO)
phenylephrine  (EXP,ISO)
phorbol 13-acetate 12-myristate  (ISO)
Pirarubicin  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
propranolol  (EXP)
pyridaben  (EXP)
resveratrol  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium atom  (ISO)
sodium chloride  (ISO)
succimer  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
testosterone  (EXP)
tetraphene  (EXP)
thalidomide  (EXP)
thapsigargin  (ISO)
thimerosal  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
tunicamycin  (EXP)
uranium atom  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
calcium ion export  (IMP,ISO)
calcium ion homeostasis  (IMP)
calcium ion import  (IMP,ISO)
calcium ion import across plasma membrane  (IBA)
calcium ion transmembrane transport  (IGI,ISO)
calcium ion transport  (IDA,IMP,TAS)
calcium ion transport into cytosol  (IMP,ISO)
cardiac muscle cell development  (IMP)
cardiac muscle contraction  (IGI)
cell communication  (IEA)
cell communication by electrical coupling involved in cardiac conduction  (ISO)
cellular response to caffeine  (IMP)
cellular response to cAMP  (ISO)
cellular response to hypoxia  (ISO)
cellular response to reactive oxygen species  (ISO)
embryonic heart tube development  (IMP)
embryonic placenta development  (IMP)
heart morphogenesis  (IGI)
intracellular calcium ion homeostasis  (ISO)
intracellular sodium ion homeostasis  (ISO)
monoatomic ion transport  (IEA)
muscle cell development  (IGI)
negative regulation of cytosolic calcium ion concentration  (IMP)
positive regulation of bone mineralization  (ISO)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of fibroblast migration  (ISO)
positive regulation of the force of heart contraction  (ISO)
post-embryonic development  (IGI)
regulation of calcium ion transport  (ISO)
regulation of cardiac muscle cell membrane potential  (TAS)
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  (ISO)
regulation of gene expression  (IMP)
regulation of heart rate  (IMP)
regulation of sodium ion transport  (ISO)
regulation of the force of heart contraction  (IMP)
relaxation of smooth muscle  (IMP)
response to ATP  (ISO)
response to glucose  (ISO)
response to hydrogen peroxide  (ISO)
response to hypoxia  (ISO)
response to immobilization stress  (ISO)
response to muscle stretch  (ISO)
response to nutrient  (ISO)
response to xenobiotic stimulus  (ISO)
sodium ion export across plasma membrane  (IMP,ISO)
sodium ion import across plasma membrane  (IMP,ISO)
sodium ion transmembrane transport  (IBA,ISO)
sodium ion transport  (IDA,ISO,TAS)
telencephalon development  (ISO)
transmembrane transport  (IEA)
vascular associated smooth muscle contraction  (IMP)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
arrhythmogenic right ventricular cardiomyopathy pathway  (IEA)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway   (ISO)
calcium transport pathway   (ISO)
calcium/calcium-mediated signaling pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
dilated cardiomyopathy pathway  (IEA)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
hypertrophic cardiomyopathy pathway  (IEA)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal cardiac muscle relaxation  (IAGP)
abnormal cardiovascular system physiology  (IAGP)
abnormal endocardium morphology  (IAGP)
abnormal exocrine pancreas physiology  (IAGP)
abnormal fetal cardiomyocyte morphology  (IAGP)
abnormal glucose homeostasis  (IAGP)
abnormal heart atrium morphology  (IAGP)
abnormal heart development  (IAGP)
abnormal heart morphology  (IAGP)
abnormal heart tube morphology  (IAGP)
abnormal mitochondrial crista morphology  (IAGP)
abnormal mitochondrial matrix morphology  (IAGP)
abnormal mitochondrial shape  (IAGP)
abnormal myocardial fiber physiology  (IAGP)
abnormal myocardium layer morphology  (IAGP)
abnormal pancreas physiology  (IAGP)
abnormal pharyngeal arch morphology  (IAGP)
abnormal placenta vasculature  (IAGP)
abnormal visceral yolk sac morphology  (IAGP)
abnormal vitelline vascular remodeling  (IAGP)
abnormal vitelline vasculature morphology  (IAGP)
absent atrioventricular cushions  (IAGP)
absent heartbeat  (IAGP)
absent placenta hemotrichorial membrane  (IAGP)
absent placental labyrinth  (IAGP)
absent vitelline blood vessels  (IAGP)
absent Z line  (IAGP)
cardiac interstitial fibrosis  (IAGP)
decreased cardiac muscle contractility  (IAGP)
decreased embryo size  (IAGP)
decreased heart rate  (IAGP)
decreased myocardial fiber number  (IAGP)
dilated mitochondrion  (IAGP)
distended pericardium  (IAGP)
edema  (IAGP)
embryo tissue necrosis  (IAGP)
embryonic growth arrest  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
enlarged first pharyngeal arch  (IAGP)
enlarged heart  (IAGP)
enlarged pericardium  (IAGP)
heart left ventricle hypertrophy  (IAGP)
impaired smooth muscle contractility  (IAGP)
increased cardiomyocyte apoptosis  (IAGP)
increased embryonic tissue cell apoptosis  (IAGP)
increased insulin secretion  (IAGP)
increased left ventricle diastolic pressure  (IAGP)
increased left ventricle systolic pressure  (IAGP)
increased pancreatic beta cell mass  (IAGP)
increased pancreatic beta cell proliferation  (IAGP)
increased ventricle muscle contractility  (IAGP)
irregular heartbeat  (IAGP)
poor circulation  (IAGP)
pregnancy-related premature death  (IAGP)
premature death  (IAGP)
thin ventricular wall  (IAGP)
trabecula carnea hypoplasia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Levosimendan reduces myocardial damage and improves cardiodynamics in streptozotocin induced diabetic cardiomyopathy via SERCA2a/NCX1 pathway. Akhtar MS, etal., Life Sci. 2016 May 15;153:55-65. doi: 10.1016/j.lfs.2016.03.049. Epub 2016 Apr 6.
2. Na+/Ca2+ exchanger subtype (NCX1, NCX2, NCX3) protein expression in the rat hippocampus following 3 min and 8 min durations of global cerebral ischemia. Bojarski C, etal., Brain Res. 2008 Jan 16;1189:198-202. Epub 2007 Nov 1.
3. Decreased Ca2+ extrusion via Na+/Ca2+ exchange in epicardial left ventricular myocytes during compensated hypertrophy. Fowler MR, etal., Am J Physiol Heart Circ Physiol. 2005 May;288(5):H2431-8. Epub 2004 Dec 22.
4. Diminished function and expression of the cardiac Na+-Ca2+ exchanger in diabetic rats: implication in Ca2+ overload. Hattori Y, etal., J Physiol. 2000 Aug 15;527 Pt 1:85-94.
5. Altered expression of sodium transporters in ischemic penumbra after focal cerebral ischemia in rats. Jung YW, etal., Neurosci Res. 2007 Oct;59(2):152-9. Epub 2007 Jun 26.
6. Phosphorylation of Na+/Ca2+ exchanger in TAB-induced cardiac hypertrophy. Katanosaka Y, etal., Ann N Y Acad Sci. 2007 Mar;1099:373-6.
7. Calcium extrusion protein expression in the hippocampal formation of chronic epileptic rats after kainate-induced status epilepticus. Ketelaars SO, etal., Epilepsia. 2004 Oct;45(10):1189-201.
8. Association of genetic polymorphisms of sodium-calcium exchanger 1 gene, NCX1, with hypertension in a Japanese general population. Kokubo Y, etal., Hypertens Res. 2004 Oct;27(10):697-702.
9. Angiotensin-converting enzyme inhibitor improves force and Ca2 +--frequency relationships in myocytes from rats with heart failure. Liao X, etal., Acta Cardiol. 2007 Apr;62(2):157-62.
10. Altered gene expression of Na+/Ca2+ exchanger isoforms NCX1, NCX2 and NCX3 in chronic ischemic rat brain. Lu J, etal., Neurosci Lett 2002 Oct 25;332(1):21-4.
11. Na+/Ca2+ exchangers: three mammalian gene families control Ca2+ transport. Lytton J Biochem J. 2007 Sep 15;406(3):365-82.
12. The thiazide-sensitive Na(+)-Cl(-) cotransporter gene, C1784T, and adrenergic receptor-beta3 gene, T727C, may be gene polymorphisms susceptible to the antihypertensive effect of thiazide diuretics. Matayoshi T, etal., Hypertens Res. 2004 Nov;27(11):821-33.
13. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
14. MGDs mouse GO annotations MGD data from the GO Consortium
15. MGD IEA MGD IEA
16. Cloning of a third mammalian Na+-Ca2+ exchanger, NCX3. Nicoll DA, etal., J Biol Chem 1996 Oct 4;271(40):24914-21.
17. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
18. NCX1 and NCX3: two new effectors of delayed preconditioning in brain ischemia. Pignataro G, etal., Neurobiol Dis. 2012 Jan;45(1):616-23. Epub 2011 Oct 17.
19. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
20. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
21. Mouse MP Annotation Import Pipeline RGD automated import pipeline
22. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
23. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
24. High levels of synaptosomal Na(+)-Ca(2+) exchangers (NCX1, NCX2, NCX3) co-localized with amyloid-beta in human cerebral cortex affected by Alzheimer's disease. Sokolow S, etal., Cell Calcium. 2011 Apr;49(4):208-16. doi: 10.1016/j.ceca.2010.12.008. Epub 2011 Mar 5.
25. An SRF/miR-1 axis regulates NCX1 and annexin A5 protein levels in the normal and failing heart. Tritsch E, etal., Cardiovasc Res. 2013 Jun 1;98(3):372-80. doi: 10.1093/cvr/cvt042. Epub 2013 Feb 22.
26. Diastolic Ca(2+) overload caused by Na(+)/Ca(2+) exchanger during the first minutes of reperfusion results in continued myocardial stunning. Wei GZ, etal., Eur J Pharmacol. 2007 Oct 15;572(1):1-11. Epub 2007 Jun 15.
27. Chronic intermittent hypoxia alters Ca2+ handling in rat cardiomyocytes by augmented Na+/Ca2+ exchange and ryanodine receptor activities in ischemia-reperfusion. Yeung HM, etal., Am J Physiol Cell Physiol. 2007 Jun;292(6):C2046-56. Epub 2007 Jan 31.
28. Upregulation of Na+/Ca2+ exchanger contributes to the enhanced Ca2+ entry in pulmonary artery smooth muscle cells from patients with idiopathic pulmonary arterial hypertension. Zhang S, etal., Am J Physiol Cell Physiol. 2007 Jun;292(6):C2297-305. Epub 2006 Dec 27.
29. Nifedipine represses ion channels, transporters and Ca(2+)-binding proteins in hearts of spontaneously hypertensive rats. Zwadlo C and Borlak J, Toxicol Appl Pharmacol. 2006 Jun 15;213(3):224-34. Epub 2005 Dec 15.
Additional References at PubMed
PMID:1374913   PMID:1700476   PMID:8659820   PMID:8889548   PMID:9530817   PMID:9673775   PMID:10075718   PMID:10349636   PMID:10525196   PMID:10902911   PMID:10922068   PMID:10967099  
PMID:11042159   PMID:11076861   PMID:11211878   PMID:11217851   PMID:11241183   PMID:11344090   PMID:11423561   PMID:11458386   PMID:11544089   PMID:11861419   PMID:11874986   PMID:12060584  
PMID:12193129   PMID:12477932   PMID:12490603   PMID:12502569   PMID:12581871   PMID:12754417   PMID:12767889   PMID:12781968   PMID:14681479   PMID:14741714   PMID:15142957   PMID:15253893  
PMID:15308581   PMID:15336980   PMID:15485817   PMID:15621046   PMID:15652482   PMID:15767668   PMID:16141072   PMID:16141073   PMID:16179590   PMID:16292983   PMID:16293789   PMID:16319116  
PMID:16407245   PMID:16434394   PMID:16602821   PMID:16839455   PMID:16943244   PMID:16966329   PMID:16985003   PMID:17079272   PMID:17093407   PMID:17114214   PMID:17311327   PMID:17314325  
PMID:17317768   PMID:17517353   PMID:17932251   PMID:18316483   PMID:18371450   PMID:18708446   PMID:18855935   PMID:19165324   PMID:19230140   PMID:19440194   PMID:19581381   PMID:19683723  
PMID:19945464   PMID:20018762   PMID:20081108   PMID:20109065   PMID:20173044   PMID:20194497   PMID:20610380   PMID:20643777   PMID:20797603   PMID:20947716   PMID:21048395   PMID:21168206  
PMID:21193587   PMID:21209332   PMID:21267068   PMID:21302256   PMID:21559415   PMID:21613675   PMID:21659499   PMID:21677750   PMID:21697239   PMID:21737792   PMID:21750914   PMID:21832054  
PMID:21862448   PMID:21873635   PMID:21931829   PMID:22081699   PMID:22081964   PMID:22327339   PMID:22355118   PMID:22407925   PMID:22431573   PMID:22565823   PMID:22610174   PMID:22933787  
PMID:23192947   PMID:23203972   PMID:23224882   PMID:23224890   PMID:23224892   PMID:23224893   PMID:23595884   PMID:23703524   PMID:23715556   PMID:23761399   PMID:23825358   PMID:24084100  
PMID:24154525   PMID:24278453   PMID:24662047   PMID:25055868   PMID:25332179   PMID:25427675   PMID:25498502   PMID:25589784   PMID:25626872   PMID:25631581   PMID:25648899   PMID:25870199  
PMID:25979335   PMID:26195795   PMID:26220386   PMID:26279433   PMID:26314851   PMID:26385750   PMID:26403541   PMID:26418893   PMID:26787195   PMID:26930384   PMID:27020658   PMID:27150455  
PMID:27229460   PMID:27411318   PMID:27441368   PMID:27725084   PMID:27789286   PMID:27816547   PMID:27838371   PMID:27880904   PMID:27928109   PMID:27942992   PMID:28634350   PMID:28755400  
PMID:28852106   PMID:28931948   PMID:29018025   PMID:29274751   PMID:29551690   PMID:29941946   PMID:30089272   PMID:30324228   PMID:30461304   PMID:30613267   PMID:30786075   PMID:32048166  
PMID:32325033   PMID:32554809   PMID:32569301   PMID:32736709   PMID:33124883   PMID:33443158   PMID:34157123   PMID:34472363   PMID:34851661   PMID:34910918   PMID:34995919   PMID:35264563  
PMID:35667322   PMID:36142639   PMID:36227903   PMID:36245125   PMID:36318802   PMID:38187761  


Genomics

Comparative Map Data
Slc8a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391781,680,534 - 82,045,816 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1781,680,534 - 82,045,806 (-)EnsemblGRCm39 Ensembl
GRCm381781,373,105 - 81,738,387 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1781,373,105 - 81,738,377 (-)EnsemblGRCm38mm10GRCm38
MGSCv371781,772,445 - 82,137,717 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361781,293,929 - 81,646,695 (-)NCBIMGSCv36mm8
Celera1785,706,575 - 86,071,957 (-)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1751.29NCBI
SLC8A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38240,097,270 - 40,512,435 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl240,097,270 - 40,611,053 (-)EnsemblGRCh38hg38GRCh38
GRCh37240,324,410 - 40,739,575 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36240,192,790 - 40,510,948 (-)NCBINCBI36Build 36hg18NCBI36
Build 34240,253,795 - 40,569,095NCBI
Celera240,180,223 - 40,580,364 (-)NCBICelera
Cytogenetic Map2p22.1NCBI
HuRef240,078,719 - 40,478,536 (-)NCBIHuRef
CHM1_1240,269,776 - 40,669,965 (-)NCBICHM1_1
T2T-CHM13v2.0240,106,262 - 40,521,419 (-)NCBIT2T-CHM13v2.0
Slc8a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8618,975,498 - 19,299,704 (+)NCBIGRCr8
mRatBN7.2613,194,609 - 13,547,369 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl613,194,662 - 13,535,628 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx613,583,983 - 13,850,400 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0613,893,299 - 14,159,696 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0613,388,155 - 13,652,568 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.064,244,076 - 4,564,262 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl64,258,991 - 4,520,604 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.064,208,126 - 4,495,690 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.464,421,046 - 4,691,716 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.164,421,045 - 4,691,719 (-)NCBI
Celera612,962,979 - 13,227,191 (+)NCBICelera
Cytogenetic Map6q12NCBI
Slc8a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554417,656,031 - 7,957,640 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554417,653,107 - 8,037,784 (-)NCBIChiLan1.0ChiLan1.0
SLC8A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21285,919,909 - 86,321,105 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A85,923,870 - 86,341,238 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A40,169,339 - 40,586,546 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A40,936,799 - 41,444,963 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A40,939,900 - 41,363,038 (-)Ensemblpanpan1.1panPan2
SLC8A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11732,004,207 - 32,381,399 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1732,005,245 - 32,307,700 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1731,772,774 - 32,072,461 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01732,669,189 - 33,057,808 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1732,668,180 - 32,983,961 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11731,887,301 - 32,186,904 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01731,956,496 - 32,256,674 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01732,171,264 - 32,471,231 (-)NCBIUU_Cfam_GSD_1.0
Slc8a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629239,466,272 - 39,841,883 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650810,968,656 - 11,253,070 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650810,894,918 - 11,256,084 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC8A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl399,897,162 - 100,244,759 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1399,823,503 - 100,257,306 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23106,268,345 - 106,367,008 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC8A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11466,813,523 - 67,210,261 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604544,751,652 - 45,239,417 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc8a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473821,651,489 - 21,939,927 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473821,648,277 - 22,026,385 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc8a1
11935 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:246
Count of miRNA genes:57
Interacting mature miRNAs:66
Transcripts:ENSMUST00000086538, ENSMUST00000163123, ENSMUST00000163680
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined175020395784204103Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175175842585758612Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175175842585758612Mouse
1357447Heal13_mwound healing/regeneration 13 (mouse)Not determined175710765191107803Mouse
4141758Pstc5_mperiosteal circumference 5 (mouse)Not determined175710765191107803Mouse
4141011Bmd26_mbone mineral density 26 (mouse)Not determined175710765191107803Mouse
1300735Pgia20_mproteoglycan induced arthritis 20 (mouse)Not determined175710765191107803Mouse
12910536Nrq8a_mnoise-induced hearing loss resistant QTL 8a (mouse)175710765191107803Mouse
12910537Nrq8_mnoise-induced hearing loss resistant QTL 8 (mouse)175710765191107803Mouse
4142414Pregq4_mpregnancy QTL 4 (mouse)Not determined175753444793507179Mouse
4141040Hmtb9_mhemostasis and thrombosis rebleeding time 9 (mouse)Not determined5758908991589197Mouse
1301107Scc4_mcolon tumor susceptibility 4 (mouse)Not determined176230101095294699Mouse
11528551Sluc32_msusceptibility to lung cancer 32 (mouse)176230101095294699Mouse
1302017Aliq3_macute lung injury QTL 3 (mouse)Not determined176388554895294699Mouse
1301728Ffal1_mfree fatty acid level 1 (mouse)Not determined176521493895294699Mouse
14928308Manh82_mmandible shape 82 (mouse)176631524395294699Mouse
13464254Ifvrq3_minfluenza virus resistance QTL 3 (mouse)176795765583908089Mouse
4142256Nilac12_mnicotine induced locomotor activity 12 (mouse)Not determined176894131995294699Mouse
11039500Ltpr7c_mLeishmania tropica response 7c (mouse)177070119895294699Mouse
11039498Ltpr7b_mLeishmania tropica response 7b (mouse)177070119895294699Mouse
11039499Ltpr7a_mLeishmania tropica response 7a (mouse)177070119895294699Mouse
11039514Ltpr7_mLeishmania tropica response 7 (mouse)177070119895294699Mouse
1357528Nhdlq3_mnon-HDL QTL 3 (mouse)Not determined177339513295294699Mouse
4141195Nilac11_mnicotine induced locomotor activity 11 (mouse)Not determined177339513295294699Mouse
4141697Hbnr3_mHeligmosomoides bakeri nematode resistance 3 (mouse)Not determined7410765193507179Mouse
1357646Axtq3_manxiety QTL 3 (mouse)Not determined177458908990395270Mouse
1357552Aaj4_manxiety in A/J 4 (mouse)Not determined177458908990395270Mouse
14697708Stsl5_mSalmonella typhimurium susceptibility locus 5 (mouse)178080742991407428Mouse

Markers in Region
RH136155  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381781,515,517 - 81,515,734UniSTSGRCm38
MGSCv371781,914,857 - 81,915,074UniSTSGRCm37
Celera1785,849,556 - 85,849,773UniSTS
Cytogenetic Map17E3UniSTS
cM Map1748.0UniSTS
AI605517  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381781,505,209 - 81,505,313UniSTSGRCm38
MGSCv371781,904,549 - 81,904,653UniSTSGRCm37
Celera1785,839,238 - 85,839,342UniSTS
Cytogenetic Map17E3UniSTS
cM Map1748.0UniSTS
Whitehead/MRC_RH17989.71UniSTS
AI852629  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381781,373,635 - 81,373,724UniSTSGRCm38
MGSCv371781,772,975 - 81,773,064UniSTSGRCm37
Celera1785,707,105 - 85,707,194UniSTS
Cytogenetic Map17E3UniSTS
cM Map1748.0UniSTS
Whitehead/MRC_RH17999.84UniSTS
Whitehead/MRC_RH17991.78UniSTS
D17Mit243  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381781,507,422 - 81,507,517UniSTSGRCm38
MGSCv371781,906,762 - 81,906,857UniSTSGRCm37
Celera1785,841,451 - 85,841,544UniSTS
Cytogenetic Map17E3UniSTS
cM Map1755.7UniSTS
Whitehead Genetic1749.2UniSTS
Whitehead_YAC17 UniSTS
UniSTS:237714  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381781,605,554 - 81,605,888UniSTSGRCm38
MGSCv371782,004,894 - 82,005,228UniSTSGRCm37
Celera1785,939,382 - 85,939,716UniSTS
Cytogenetic Map17E3UniSTS
cM Map1748.0UniSTS
RH141979  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381781,373,130 - 81,373,334UniSTSGRCm38
MGSCv371781,772,470 - 81,772,674UniSTSGRCm37
Celera1785,706,600 - 85,706,804UniSTS
Cytogenetic Map17E3UniSTS
cM Map1748.0UniSTS
RH141999  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381781,373,634 - 81,373,832UniSTSGRCm38
MGSCv371781,772,974 - 81,773,172UniSTSGRCm37
Celera1785,707,104 - 85,707,302UniSTS
Cytogenetic Map17E3UniSTS
cM Map1748.0UniSTS
PMC20271P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381781,648,870 - 81,649,506UniSTSGRCm38
MGSCv371782,048,210 - 82,048,846UniSTSGRCm37
Celera1785,982,672 - 85,983,308UniSTS
Cytogenetic Map17E3UniSTS
cM Map1748.0UniSTS
SLC8A1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381781,648,961 - 81,649,607UniSTSGRCm38
MGSCv371782,048,301 - 82,048,947UniSTSGRCm37
Celera1785,982,763 - 85,983,409UniSTS
Cytogenetic Map17E3UniSTS
cM Map1748.0UniSTS
D6Wox29  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381781,669,782 - 81,669,929UniSTSGRCm38
MGSCv371782,069,122 - 82,069,269UniSTSGRCm37
Cytogenetic Map17E3UniSTS
cM Map1748.0UniSTS
Slc8a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381781,648,667 - 81,649,271UniSTSGRCm38
MGSCv371782,048,007 - 82,048,611UniSTSGRCm37
Celera1785,982,469 - 85,983,073UniSTS
Cytogenetic Map17E3UniSTS
Slc8a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17E3UniSTS
Slc8a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17E3UniSTS
SLC8A1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381781,647,912 - 81,648,141UniSTSGRCm38
MGSCv371782,047,252 - 82,047,481UniSTSGRCm37
Celera1785,981,714 - 85,981,943UniSTS
Cytogenetic Map17E3UniSTS
Slc8a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17E3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001112798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_104580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB030891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB080744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC104139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC175058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF004666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF108396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF108397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF108398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF409089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF423306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB660129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ140501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ388998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U70033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000086538   ⟹   ENSMUSP00000083725
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1781,696,120 - 81,957,036 (-)Ensembl
GRCm38.p6 Ensembl1781,388,691 - 81,649,607 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163123   ⟹   ENSMUSP00000132809
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1781,695,953 - 82,045,806 (-)Ensembl
GRCm38.p6 Ensembl1781,388,524 - 81,738,377 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163680   ⟹   ENSMUSP00000126373
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1781,696,120 - 81,957,036 (-)Ensembl
GRCm38.p6 Ensembl1781,388,691 - 81,649,607 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234131   ⟹   ENSMUSP00000157278
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1781,680,534 - 81,957,037 (-)Ensembl
GRCm38.p6 Ensembl1781,373,105 - 81,649,608 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234923   ⟹   ENSMUSP00000157245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1781,955,238 - 81,977,616 (-)Ensembl
GRCm38.p6 Ensembl1781,647,809 - 81,670,187 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235015   ⟹   ENSMUSP00000157030
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1781,693,032 - 82,045,806 (-)Ensembl
GRCm38.p6 Ensembl1781,385,603 - 81,738,377 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249357   ⟹   ENSMUSP00000159714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1781,695,561 - 81,957,067 (-)Ensembl
RefSeq Acc Id: NM_001112798   ⟹   NP_001106269
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 82,045,816 (-)NCBI
GRCm381781,373,105 - 81,738,387 (-)NCBI
MGSCv371781,772,445 - 82,137,717 (-)RGD
Celera1785,706,575 - 86,071,967 (-)NCBI
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001286684   ⟹   NP_001273613
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 82,045,816 (-)NCBI
GRCm381781,373,105 - 81,738,387 (-)NCBI
Celera1785,706,575 - 86,071,967 (-)NCBI
Sequence:
RefSeq Acc Id: NM_011406   ⟹   NP_035536
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 82,045,816 (-)NCBI
GRCm381781,373,105 - 81,738,387 (-)NCBI
MGSCv371781,772,445 - 82,137,717 (-)RGD
Celera1785,706,575 - 86,071,967 (-)NCBI
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_104580
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 82,045,816 (-)NCBI
GRCm381781,373,105 - 81,738,387 (-)NCBI
Celera1785,706,575 - 86,071,967 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523932   ⟹   XP_006523995
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 81,978,212 (-)NCBI
GRCm381781,373,105 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523933   ⟹   XP_006523996
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 81,979,106 (-)NCBI
GRCm381781,373,105 - 81,671,678 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523934   ⟹   XP_006523997
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 81,978,212 (-)NCBI
GRCm381781,373,105 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523935   ⟹   XP_006523998
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 81,978,212 (-)NCBI
GRCm381781,373,105 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523936   ⟹   XP_006523999
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 81,978,212 (-)NCBI
GRCm381781,373,105 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523937   ⟹   XP_006524000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 81,978,212 (-)NCBI
GRCm381781,373,105 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523938   ⟹   XP_006524001
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 81,978,212 (-)NCBI
GRCm381781,373,105 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523939   ⟹   XP_006524002
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 81,978,212 (-)NCBI
GRCm381781,373,105 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523940   ⟹   XP_006524003
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 81,978,212 (-)NCBI
GRCm381781,373,105 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523941   ⟹   XP_006524004
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 81,978,212 (-)NCBI
GRCm381781,373,105 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523942   ⟹   XP_006524005
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 81,978,212 (-)NCBI
GRCm381781,373,105 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523943   ⟹   XP_006524006
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 81,978,212 (-)NCBI
GRCm381781,373,105 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523944   ⟹   XP_006524007
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,680,534 - 81,978,212 (-)NCBI
GRCm381781,373,105 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317368   ⟹   XP_017172857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,745,174 - 81,978,212 (-)NCBI
GRCm381781,437,745 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317369   ⟹   XP_017172858
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,749,081 - 81,978,212 (-)NCBI
GRCm381781,441,652 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317370   ⟹   XP_017172859
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,749,201 - 81,978,212 (-)NCBI
GRCm381781,441,772 - 81,670,783 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004939482
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391781,715,524 - 81,978,212 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001106269 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273613 (Get FASTA)   NCBI Sequence Viewer  
  NP_035536 (Get FASTA)   NCBI Sequence Viewer  
  XP_006523995 (Get FASTA)   NCBI Sequence Viewer  
  XP_006523996 (Get FASTA)   NCBI Sequence Viewer  
  XP_006523997 (Get FASTA)   NCBI Sequence Viewer  
  XP_006523998 (Get FASTA)   NCBI Sequence Viewer  
  XP_006523999 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524000 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524001 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524002 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524003 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524004 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524005 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524006 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524007 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172857 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172858 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172859 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB46708 (Get FASTA)   NCBI Sequence Viewer  
  AAB69167 (Get FASTA)   NCBI Sequence Viewer  
  AAF08995 (Get FASTA)   NCBI Sequence Viewer  
  AAF08996 (Get FASTA)   NCBI Sequence Viewer  
  AAF08997 (Get FASTA)   NCBI Sequence Viewer  
  AAH79673 (Get FASTA)   NCBI Sequence Viewer  
  AAK98607 (Get FASTA)   NCBI Sequence Viewer  
  AAL18847 (Get FASTA)   NCBI Sequence Viewer  
  ABD46717 (Get FASTA)   NCBI Sequence Viewer  
  BAB08169 (Get FASTA)   NCBI Sequence Viewer  
  BAB08170 (Get FASTA)   NCBI Sequence Viewer  
  BAB08171 (Get FASTA)   NCBI Sequence Viewer  
  BAB08172 (Get FASTA)   NCBI Sequence Viewer  
  BAB08173 (Get FASTA)   NCBI Sequence Viewer  
  BAB08174 (Get FASTA)   NCBI Sequence Viewer  
  BAB08175 (Get FASTA)   NCBI Sequence Viewer  
  BAB08176 (Get FASTA)   NCBI Sequence Viewer  
  BAB85833 (Get FASTA)   NCBI Sequence Viewer  
  BAC33262 (Get FASTA)   NCBI Sequence Viewer  
  EDL38537 (Get FASTA)   NCBI Sequence Viewer  
  EDL38538 (Get FASTA)   NCBI Sequence Viewer  
  EDL38539 (Get FASTA)   NCBI Sequence Viewer  
  EDL38540 (Get FASTA)   NCBI Sequence Viewer  
  EDL38541 (Get FASTA)   NCBI Sequence Viewer  
  EDL38542 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000083725.4
  ENSMUSP00000126373
  ENSMUSP00000126373.3
  ENSMUSP00000132809
  ENSMUSP00000132809.3
  ENSMUSP00000157030
  ENSMUSP00000157030.2
  ENSMUSP00000157245.2
  ENSMUSP00000157278
  ENSMUSP00000157278.2
  ENSMUSP00000159714
GenBank Protein P70414 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_035536   ⟸   NM_011406
- Peptide Label: isoform A precursor
- UniProtKB: P70414 (UniProtKB/Swiss-Prot),   G3X9J1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001106269   ⟸   NM_001112798
- Peptide Label: isoform B precursor
- UniProtKB: Q68FL0 (UniProtKB/TrEMBL),   G5E8Y0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273613   ⟸   NM_001286684
- Peptide Label: isoform C precursor
- UniProtKB: A0A3Q4EBU5 (UniProtKB/TrEMBL),   O35157 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006523996   ⟸   XM_006523933
- Peptide Label: isoform X1
- UniProtKB: P70414 (UniProtKB/Swiss-Prot),   G3X9J1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524007   ⟸   XM_006523944
- Peptide Label: isoform X12
- UniProtKB: G5E8Y0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524003   ⟸   XM_006523940
- Peptide Label: isoform X8
- UniProtKB: G5E8Y0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524001   ⟸   XM_006523938
- Peptide Label: isoform X6
- UniProtKB: G5E8Y0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524005   ⟸   XM_006523942
- Peptide Label: isoform X10
- UniProtKB: P70414 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006523999   ⟸   XM_006523936
- Peptide Label: isoform X4
- UniProtKB: P70414 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006523997   ⟸   XM_006523934
- Peptide Label: isoform X2
- UniProtKB: P70414 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006524006   ⟸   XM_006523943
- Peptide Label: isoform X11
- UniProtKB: G5E8Y0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524002   ⟸   XM_006523939
- Peptide Label: isoform X7
- UniProtKB: Q68FL0 (UniProtKB/TrEMBL),   G5E8Y0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524000   ⟸   XM_006523937
- Peptide Label: isoform X5
- UniProtKB: G5E8Y0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524004   ⟸   XM_006523941
- Peptide Label: isoform X9
- UniProtKB: P70414 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006523998   ⟸   XM_006523935
- Peptide Label: isoform X3
- UniProtKB: P70414 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006523995   ⟸   XM_006523932
- Peptide Label: isoform X1
- UniProtKB: P70414 (UniProtKB/Swiss-Prot),   G3X9J1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172857   ⟸   XM_017317368
- Peptide Label: isoform X13
- UniProtKB: Q27PY9 (UniProtKB/TrEMBL),   Q91ZJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172858   ⟸   XM_017317369
- Peptide Label: isoform X13
- UniProtKB: Q27PY9 (UniProtKB/TrEMBL),   Q91ZJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172859   ⟸   XM_017317370
- Peptide Label: isoform X13
- UniProtKB: Q27PY9 (UniProtKB/TrEMBL),   Q91ZJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000083725   ⟸   ENSMUST00000086538
RefSeq Acc Id: ENSMUSP00000126373   ⟸   ENSMUST00000163680
RefSeq Acc Id: ENSMUSP00000132809   ⟸   ENSMUST00000163123
RefSeq Acc Id: ENSMUSP00000157030   ⟸   ENSMUST00000235015
RefSeq Acc Id: ENSMUSP00000157245   ⟸   ENSMUST00000234923
RefSeq Acc Id: ENSMUSP00000157278   ⟸   ENSMUST00000234131
RefSeq Acc Id: ENSMUSP00000159714   ⟸   ENSMUST00000249357
Protein Domains
Calx-beta   J

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P70414-F1-model_v2 AlphaFold P70414 1-970 view protein structure

Promoters
RGD ID:13676868
Promoter ID:EPDNEW_M22583
Type:initiation region
Name:Slc8a1_2
Description:Mus musculus solute carrier family 8 (sodium/calcium exchanger),member 1 , transcript variant B, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22584  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381781,670,208 - 81,670,268EPDNEW
RGD ID:13676870
Promoter ID:EPDNEW_M22584
Type:initiation region
Name:Slc8a1_1
Description:Mus musculus solute carrier family 8 (sodium/calcium exchanger),member 1 , transcript variant B, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22583  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381781,738,384 - 81,738,444EPDNEW
RGD ID:6828694
Promoter ID:MM_KWN:24298
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:ENSMUST00000067792,   ENSMUST00000086538,   UC008DRR.1,   UC008DRV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361782,047,641 - 82,048,292 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107956 AgrOrtholog
Ensembl Genes ENSMUSG00000054640 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000086538.10 UniProtKB/TrEMBL
  ENSMUST00000163123 ENTREZGENE
  ENSMUST00000163123.3 UniProtKB/TrEMBL
  ENSMUST00000163680 ENTREZGENE
  ENSMUST00000163680.9 UniProtKB/TrEMBL
  ENSMUST00000234131 ENTREZGENE
  ENSMUST00000234131.2 UniProtKB/TrEMBL
  ENSMUST00000234923.2 UniProtKB/TrEMBL
  ENSMUST00000235015 ENTREZGENE
  ENSMUST00000235015.2 UniProtKB/TrEMBL
  ENSMUST00000249357 ENTREZGENE
Gene3D-CATH 1.20.1420.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.2030 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CalX-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calx_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DnaJ_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na_Ca_Ex UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na_Ca_Ex_C-exten UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NaCa_exhngr1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NaCa_Exmemb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NCX_ion-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20541 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:107956 ENTREZGENE
NCBI Gene 20541 ENTREZGENE
PANTHER SODIUM/CALCIUM EXCHANGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SODIUM/CALCIUM EXCHANGER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Calx-beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na_Ca_ex UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na_Ca_ex_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc8a1 PhenoGen
PRINTS NACAEXCHNGR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NACAEXCHNGR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE DNAJ_2 UniProtKB/TrEMBL
SMART Calx_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF141072 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A3Q4EBU5 ENTREZGENE, UniProtKB/TrEMBL
  A0A3Q4L326_MOUSE UniProtKB/TrEMBL
  G3X9J1 ENTREZGENE, UniProtKB/TrEMBL
  G5E8Y0 ENTREZGENE, UniProtKB/TrEMBL
  NAC1_MOUSE UniProtKB/Swiss-Prot
  O35157 ENTREZGENE, UniProtKB/TrEMBL
  P70414 ENTREZGENE
  Q27PY9 ENTREZGENE, UniProtKB/TrEMBL
  Q68FL0 ENTREZGENE, UniProtKB/TrEMBL
  Q8BXB3_MOUSE UniProtKB/TrEMBL
  Q8R505_MOUSE UniProtKB/TrEMBL
  Q91ZJ7 ENTREZGENE, UniProtKB/TrEMBL
  Q9R072_MOUSE UniProtKB/TrEMBL
  Q9R073_MOUSE UniProtKB/TrEMBL
  Q9R074_MOUSE UniProtKB/TrEMBL