SLC8A1 (solute carrier family 8 member A1) - Rat Genome Database

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Gene: SLC8A1 (solute carrier family 8 member A1) Homo sapiens
Analyze
Symbol: SLC8A1
Name: solute carrier family 8 member A1
RGD ID: 731021
HGNC Page HGNC
Description: Enables ankyrin binding activity; calcium:sodium antiporter activity; and calmodulin binding activity. Involved in several processes, including cellular sodium ion homeostasis; metal ion transport; and positive regulation of the force of heart contraction. Located in nucleoplasm and plasma membrane. Is integral component of plasma membrane. Part of cell periphery and synapse. Implicated in hypertension. Biomarker of Alzheimer's disease and pulmonary hypertension.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: DKFZp779F0871; FLJ37694; FLJ43417; MGC119581; Na(+)/Ca(2+)-exchange protein 1; Na+/Ca++ exchanger; Na+/Ca2+ exchanger; NCX1; sodium/calcium exchanger 1; solute carrier family 8 (sodium/calcium exchanger), member 1; solute carrier family 8 member 1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl240,097,270 - 40,611,053 (-)EnsemblGRCh38hg38GRCh38
GRCh38240,097,270 - 40,512,435 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37240,321,663 - 40,739,575 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36240,192,790 - 40,510,948 (-)NCBINCBI36hg18NCBI36
Build 34240,253,795 - 40,569,095NCBI
Celera240,180,223 - 40,580,364 (-)NCBI
Cytogenetic Map2p22.1NCBI
HuRef240,078,719 - 40,478,536 (-)NCBIHuRef
CHM1_1240,269,776 - 40,669,965 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-noradrenaline  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-[(2,3,4-trimethoxyphenyl)methyl]piperazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-phenylprop-2-enal  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-tert-Octylphenol  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP)
aldehydo-D-glucose  (ISO)
amiodarone  (ISO)
antirheumatic drug  (EXP)
aristolochic acid  (EXP)
Aroclor 1254  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
aspartame  (ISO)
atrazine  (ISO)
barium(0)  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (EXP)
bepridil  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (EXP)
C60 fullerene  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
cefaloridine  (ISO)
chrysene  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
Cuprizon  (ISO)
D-glucose  (ISO)
DDT  (ISO)
decabromodiphenyl ether  (ISO)
dextran sulfate  (ISO)
dichloroacetic acid  (ISO)
dioxygen  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
ethanol  (ISO)
etoposide  (EXP)
flutamide  (ISO)
folic acid  (ISO)
fructose  (ISO)
geldanamycin  (EXP)
genistein  (EXP,ISO)
glucose  (ISO)
glycidol  (ISO)
isoprenaline  (ISO)
maneb  (ISO)
methapyrilene  (EXP)
monosodium L-glutamate  (ISO)
nickel atom  (EXP)
O-methyleugenol  (EXP)
ouabain  (ISO)
p-tert-Amylphenol  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
PCB138  (ISO)
pentanal  (EXP)
phenylephrine  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
potassium chromate  (EXP)
progesterone  (EXP)
propranolol  (ISO)
pyridaben  (ISO)
resveratrol  (ISO)
SB 431542  (EXP)
silicon dioxide  (EXP)
sodium atom  (EXP)
succimer  (EXP)
sunitinib  (EXP)
testosterone  (ISO)
tetraphene  (ISO)
thalidomide  (ISO)
thapsigargin  (ISO)
thimerosal  (EXP)
titanium dioxide  (ISO)
trichloroethene  (ISO)
trichostatin A  (EXP)
triclosan  (EXP)
tunicamycin  (ISO)
uranium atom  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
calcium ion export  (IDA)
calcium ion homeostasis  (ISS)
calcium ion import  (IDA)
calcium ion import across plasma membrane  (IBA)
calcium ion transmembrane transport  (IGI,ISO,ISS)
calcium ion transport  (IEA,ISO)
calcium ion transport into cytosol  (ISO,ISS)
cardiac muscle cell development  (ISO,ISS)
cardiac muscle contraction  (ISO,TAS)
cell communication  (IEA)
cell communication by electrical coupling involved in cardiac conduction  (ISS)
cellular calcium ion homeostasis  (ISO,ISS)
cellular response to caffeine  (ISS)
cellular response to cAMP  (IEA,ISO)
cellular response to hypoxia  (IEA,ISO)
cellular response to reactive oxygen species  (IDA)
cellular sodium ion homeostasis  (IDA)
cytosolic calcium ion transport  (TAS)
embryonic heart tube development  (ISO)
embryonic placenta development  (ISO)
heart morphogenesis  (ISO)
ion transport  (TAS)
membrane depolarization during cardiac muscle cell action potential  (TAS)
metal ion transport  (IBA)
muscle cell development  (ISO)
muscle contraction  (TAS)
negative regulation of cytosolic calcium ion concentration  (ISS)
negative regulation of protein serine/threonine kinase activity  (ISS)
positive regulation of bone mineralization  (IMP)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of fibroblast migration  (IEA,ISO)
positive regulation of the force of heart contraction  (IMP)
post-embryonic development  (ISO)
regulation of calcium ion transport  (ISO)
regulation of cardiac conduction  (TAS)
regulation of cardiac muscle contraction by calcium ion signaling  (TAS)
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  (ISS,TAS)
regulation of cell communication by electrical coupling  (TAS)
regulation of gene expression  (ISS)
regulation of heart rate  (ISS)
regulation of postsynaptic cytosolic calcium ion concentration  (IEA)
regulation of sodium ion transport  (IEA,ISO)
regulation of the force of heart contraction  (IC,ISO,ISS)
relaxation of cardiac muscle  (IC,TAS)
relaxation of smooth muscle  (ISS)
response to ATP  (IEA,ISO)
response to glucose  (IEA,ISO)
response to hydrogen peroxide  (IEA,ISO)
response to hypoxia  (ISO)
response to immobilization stress  (IEA,ISO)
response to muscle stretch  (IMP)
response to nutrient  (IEA,ISO)
response to xenobiotic stimulus  (IEA,ISO)
sodium ion export across plasma membrane  (IDA,IEA)
sodium ion import across plasma membrane  (IDA)
sodium ion transmembrane transport  (IBA,IEA,IGI,IMP)
sodium ion transport  (ISO)
telencephalon development  (IEA,ISO)
vascular associated smooth muscle contraction  (ISS)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway  (EXP)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (EXP)
amiodarone pharmacodynamics pathway  (EXP)
amlodipine pharmacodynamics pathway  (EXP)
arrhythmogenic right ventricular cardiomyopathy pathway  (IEA)
atenolol pharmacodynamics pathway  (EXP)
betaxolol pharmacodynamics pathway  (EXP)
bisoprolol pharmacodynamics pathway  (EXP)
bupranolol drug pathway  (EXP)
bupranolol pharmacodynamics pathway  (EXP)
calcium transport pathway  (TAS)
calcium/calcium-mediated signaling pathway  (TAS)
carvedilol pharmacodynamics pathway  (EXP)
dilated cardiomyopathy pathway  (IEA)
diltiazem pharmacodynamics pathway  (EXP)
disopyramide pharmacodynamics pathway  (EXP)
dobutamine pharmacodynamics pathway  (EXP)
esmolol pharmacodynamics pathway  (EXP)
flecainde pharmacodynamics pathway  (EXP)
fosphenytoin pharmacodynamics pathway  (EXP)
hypertrophic cardiomyopathy pathway  (IEA)
ibutilide pharmacodynamics pathway  (EXP)
isoprenaline pharmacodynamics pathway  (EXP)
isradipine pharmacodynamics pathway  (EXP)
levobunolol pharmacodynamics pathway  (EXP)
lidocaine pharmacodynamics pathway  (EXP)
metoprolol pharmacodynamics pathway  (EXP)
mexiletine pharmacodynamics pathway  (EXP)
nadolol pharmacodynamics pathway  (EXP)
nebivolol pharmacodynamics pathway  (EXP)
nifedipine pharmacodynamics pathway  (EXP)
nimodipine pharmacodynamics pathway  (EXP)
nisoldipine pharmacodynamics pathway  (EXP)
nitrendipine pharmacodynamics pathway  (EXP)
penbutolol pharmacodynamics pathway  (EXP)
phenytoin pharmacodynamics pathway  (EXP)
pindolol pharmacodynamics pathway  (EXP)
procainamide pharmacodynamics pathway  (EXP)
propranolol pharmacodynamics pathway  (EXP)
quinidine pharmacodynamics pathway  (EXP)
sotalol pharmacodynamics pathway  (EXP)
timolol pharmacodynamics pathway  (EXP)
verapamil pharmacodynamics pathway  (EXP)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
1. Akhtar MS, etal., Life Sci. 2016 May 15;153:55-65. doi: 10.1016/j.lfs.2016.03.049. Epub 2016 Apr 6.
2. Bojarski C, etal., Brain Res. 2008 Jan 16;1189:198-202. Epub 2007 Nov 1.
3. Fowler MR, etal., Am J Physiol Heart Circ Physiol. 2005 May;288(5):H2431-8. Epub 2004 Dec 22.
4. GOA_HUMAN data from the GO Consortium
5. Hattori Y, etal., J Physiol. 2000 Aug 15;527 Pt 1:85-94.
6. Jung YW, etal., Neurosci Res. 2007 Oct;59(2):152-9. Epub 2007 Jun 26.
7. Katanosaka Y, etal., Ann N Y Acad Sci. 2007 Mar;1099:373-6.
8. Ketelaars SO, etal., Epilepsia. 2004 Oct;45(10):1189-201.
9. Kim JW, etal., Am J Hum Genet. 2012 Jul 13;91(1):180-4. doi: 10.1016/j.ajhg.2012.05.019. Epub 2012 Jun 21.
10. Kokubo Y, etal., Hypertens Res. 2004 Oct;27(10):697-702.
11. Liao X, etal., Acta Cardiol. 2007 Apr;62(2):157-62.
12. Lu J, etal., Neurosci Lett 2002 Oct 25;332(1):21-4.
13. Lytton J Biochem J. 2007 Sep 15;406(3):365-82.
14. Matayoshi T, etal., Hypertens Res. 2004 Nov;27(11):821-33.
15. Pignataro G, etal., Neurobiol Dis. 2012 Jan;45(1):616-23. Epub 2011 Oct 17.
16. Pipeline to import KEGG annotations from KEGG into RGD
17. Pipeline to import SMPDB annotations from SMPDB into RGD
18. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19. RGD automated import pipeline for gene-chemical interactions
20. Sano M, etal., Hum Mol Genet. 2014 Dec 15;23(24):6668-76. doi: 10.1093/hmg/ddu375. Epub 2014 Jul 23.
21. Sokolow S, etal., Cell Calcium. 2011 Apr;49(4):208-16. doi: 10.1016/j.ceca.2010.12.008. Epub 2011 Mar 5.
22. Tritsch E, etal., Cardiovasc Res. 2013 Jun 1;98(3):372-80. doi: 10.1093/cvr/cvt042. Epub 2013 Feb 22.
23. Wei GZ, etal., Eur J Pharmacol. 2007 Oct 15;572(1):1-11. Epub 2007 Jun 15.
24. Yeung HM, etal., Am J Physiol Cell Physiol. 2007 Jun;292(6):C2046-56. Epub 2007 Jan 31.
25. Zhang S, etal., Am J Physiol Cell Physiol. 2007 Jun;292(6):C2297-305. Epub 2006 Dec 27.
26. Zwadlo C and Borlak J, Toxicol Appl Pharmacol. 2006 Jun 15;213(3):224-34. Epub 2005 Dec 15.
Additional References at PubMed
PMID:1374913   PMID:1476165   PMID:1559714   PMID:1647256   PMID:8485996   PMID:8790037   PMID:8921376   PMID:9516469   PMID:9847074   PMID:10536662   PMID:11241183   PMID:11350050  
PMID:11821059   PMID:11916852   PMID:12031969   PMID:12477932   PMID:12502539   PMID:14593108   PMID:14702039   PMID:14736881   PMID:14981087   PMID:15033764   PMID:15105296   PMID:15475962  
PMID:15557343   PMID:15703175   PMID:16292983   PMID:16314582   PMID:16399865   PMID:16679322   PMID:16921169   PMID:17178715   PMID:17541957   PMID:17614935   PMID:17846126   PMID:17912271  
PMID:18635667   PMID:18660489   PMID:18996841   PMID:19095005   PMID:19481548   PMID:19541636   PMID:19830548   PMID:20018762   PMID:20109173   PMID:20173311   PMID:20379614   PMID:20424473  
PMID:21126331   PMID:21321244   PMID:21613675   PMID:21790537   PMID:21833492   PMID:21858195   PMID:21873429   PMID:21873635   PMID:21930298   PMID:22270364   PMID:22456474   PMID:22479505  
PMID:22628157   PMID:22842068   PMID:23069678   PMID:23192947   PMID:23224869   PMID:23224872   PMID:23224875   PMID:23224879   PMID:23224883   PMID:23224887   PMID:23224890   PMID:23224891  
PMID:23224892   PMID:23251661   PMID:23376057   PMID:23563609   PMID:23608603   PMID:23913256   PMID:24324551   PMID:24498266   PMID:24623842   PMID:24811271   PMID:24952745   PMID:25035420  
PMID:25240745   PMID:25336645   PMID:25431337   PMID:25481039   PMID:25500693   PMID:25589784   PMID:25633096   PMID:25770213   PMID:26045217   PMID:26418268   PMID:26418956   PMID:26421717  
PMID:26567603   PMID:26775040   PMID:27031991   PMID:27108064   PMID:27247424   PMID:27588478   PMID:27879314   PMID:28395930   PMID:28535874   PMID:28807015   PMID:29182730   PMID:29594857  
PMID:29955038   PMID:29987050   PMID:30466198   PMID:31347915   PMID:31837246   PMID:32562975   PMID:32827867   PMID:32899900   PMID:34127021  


Genomics

Comparative Map Data
SLC8A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl240,097,270 - 40,611,053 (-)EnsemblGRCh38hg38GRCh38
GRCh38240,097,270 - 40,512,435 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37240,321,663 - 40,739,575 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36240,192,790 - 40,510,948 (-)NCBINCBI36hg18NCBI36
Build 34240,253,795 - 40,569,095NCBI
Celera240,180,223 - 40,580,364 (-)NCBI
Cytogenetic Map2p22.1NCBI
HuRef240,078,719 - 40,478,536 (-)NCBIHuRef
CHM1_1240,269,776 - 40,669,965 (-)NCBICHM1_1
Slc8a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391781,680,534 - 82,045,816 (-)NCBIGRCm39mm39
GRCm39 Ensembl1781,680,534 - 82,045,806 (-)Ensembl
GRCm381781,373,105 - 81,738,387 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1781,373,105 - 81,738,377 (-)EnsemblGRCm38mm10GRCm38
MGSCv371781,772,445 - 82,137,717 (-)NCBIGRCm37mm9NCBIm37
MGSCv361781,293,929 - 81,646,695 (-)NCBImm8
Celera1785,706,575 - 86,071,957 (-)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1751.29NCBI
Slc8a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2613,194,609 - 13,547,369 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl613,194,662 - 13,535,628 (+)Ensembl
Rnor_6.064,244,076 - 4,564,262 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl64,258,991 - 4,520,604 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.064,208,126 - 4,495,690 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.464,421,046 - 4,691,716 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.164,421,045 - 4,691,719 (-)NCBI
Celera612,962,979 - 13,227,191 (+)NCBICelera
Cytogenetic Map6q12NCBI
Slc8a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554417,656,031 - 7,957,640 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554417,653,107 - 8,037,784 (-)NCBIChiLan1.0ChiLan1.0
SLC8A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A40,936,799 - 41,444,963 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A40,939,900 - 41,363,038 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A40,169,339 - 40,586,546 (-)NCBIMhudiblu_PPA_v0panPan3
SLC8A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11732,004,207 - 32,381,399 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1732,005,245 - 32,307,700 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1731,772,774 - 32,072,461 (-)NCBI
ROS_Cfam_1.01732,669,189 - 33,057,808 (-)NCBI
UMICH_Zoey_3.11731,887,301 - 32,186,904 (-)NCBI
UNSW_CanFamBas_1.01731,956,496 - 32,256,674 (-)NCBI
UU_Cfam_GSD_1.01732,171,264 - 32,471,231 (-)NCBI
Slc8a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629239,466,272 - 39,841,883 (+)NCBI
SpeTri2.0NW_00493650810,894,918 - 11,256,084 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC8A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl399,897,162 - 100,245,140 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1399,823,503 - 100,257,306 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23106,268,345 - 106,367,008 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC8A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11466,813,523 - 67,210,261 (+)NCBI
Vero_WHO_p1.0NW_02366604544,751,652 - 45,239,417 (-)NCBI
Slc8a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473821,648,277 - 22,026,385 (-)NCBI

Position Markers
D2S2328  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,678,813 - 40,678,952UniSTSGRCh37
Build 36240,532,317 - 40,532,456RGDNCBI36
Celera240,519,589 - 40,519,726RGD
Cytogenetic Map2p21UniSTS
Cytogenetic Map2p23-p22UniSTS
Cytogenetic Map2p22.3-p21UniSTS
HuRef240,417,812 - 40,417,943UniSTS
Marshfield Genetic Map261.0UniSTS
Marshfield Genetic Map261.0RGD
Genethon Genetic Map264.6UniSTS
deCODE Assembly Map265.11UniSTS
Whitehead-YAC Contig Map2 UniSTS
RH18469  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,537,795 - 40,537,897UniSTSGRCh37
Build 36240,391,299 - 40,391,401RGDNCBI36
Celera240,378,591 - 40,378,693RGD
Cytogenetic Map2p23-p22UniSTS
HuRef240,276,710 - 40,276,812UniSTS
GeneMap99-GB4 RH Map2129.98UniSTS
D2S2749  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,342,153 - 40,342,327UniSTSGRCh37
Build 36240,195,657 - 40,195,831RGDNCBI36
Celera240,183,089 - 40,183,263RGD
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map2p23-p22UniSTS
HuRef240,081,585 - 40,081,759UniSTS
Whitehead-YAC Contig Map2 UniSTS
SHGC-81024  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,594,041 - 40,594,389UniSTSGRCh37
Build 36240,447,545 - 40,447,893RGDNCBI36
Celera240,434,829 - 40,435,177RGD
Cytogenetic Map2p23-p22UniSTS
HuRef240,332,952 - 40,333,300UniSTS
RH121523  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,571,503 - 40,571,841UniSTSGRCh37
Build 36240,425,007 - 40,425,345RGDNCBI36
Celera240,412,299 - 40,412,637RGD
Cytogenetic Map2p23-p22UniSTS
HuRef240,310,420 - 40,310,758UniSTS
RH121294  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,697,230 - 40,697,546UniSTSGRCh37
Build 36240,550,734 - 40,551,050RGDNCBI36
Celera240,538,015 - 40,538,331RGD
Cytogenetic Map2p23-p22UniSTS
HuRef240,436,182 - 40,436,498UniSTS
SHGC-89339  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,533,204 - 40,533,520UniSTSGRCh37
Build 36240,386,708 - 40,387,024RGDNCBI36
Celera240,373,998 - 40,374,314RGD
Cytogenetic Map2p23-p22UniSTS
HuRef240,272,107 - 40,272,423UniSTS
SHGC-151269  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,678,667 - 40,678,971UniSTSGRCh37
Build 36240,532,171 - 40,532,475RGDNCBI36
Celera240,519,443 - 40,519,745RGD
Cytogenetic Map2p23-p22UniSTS
HuRef240,417,666 - 40,417,962UniSTS
TNG Radiation Hybrid Map117591.0UniSTS
TNG Radiation Hybrid Map227395.0UniSTS
TNG Radiation Hybrid Map1126923.0UniSTS
SHGC-172311  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,492,621 - 40,492,920UniSTSGRCh37
Build 36240,346,125 - 40,346,424RGDNCBI36
Celera240,333,417 - 40,333,716RGD
Cytogenetic Map2p23-p22UniSTS
HuRef240,231,898 - 40,232,197UniSTS
SHGC-61992  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,482,719 - 40,482,830UniSTSGRCh37
Build 36240,336,223 - 40,336,334RGDNCBI36
Celera240,323,515 - 40,323,626RGD
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map2p23-p22UniSTS
HuRef240,222,011 - 40,222,122UniSTS
GeneMap99-GB4 RH Map2129.98UniSTS
SLC8A1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,655,716 - 40,655,945UniSTSGRCh37
Build 36240,509,220 - 40,509,449RGDNCBI36
Celera240,496,495 - 40,496,724RGD
HuRef240,394,723 - 40,394,952UniSTS
Cda11b02  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,481,571 - 40,481,801UniSTSGRCh37
Build 36240,335,075 - 40,335,305RGDNCBI36
Cytogenetic Map2p23-p22UniSTS
Cytogenetic Map2p22.1UniSTS
HuRef240,220,905 - 40,221,079UniSTS
GeneMap99-GB4 RH Map2126.29UniSTS
AFMB335XC1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,655,530 - 40,655,702UniSTSGRCh37
Build 36240,509,034 - 40,509,206RGDNCBI36
Celera240,496,309 - 40,496,481RGD
Cytogenetic Map2p23-p22UniSTS
HuRef240,394,537 - 40,394,709UniSTS
Whitehead-YAC Contig Map2 UniSTS
WI-16830  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,345,788 - 40,345,937UniSTSGRCh37
Build 36240,199,292 - 40,199,441RGDNCBI36
Celera240,186,722 - 40,186,871RGD
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map2p23-p22UniSTS
HuRef240,085,218 - 40,085,367UniSTS
GeneMap99-GB4 RH Map2129.16UniSTS
Whitehead-RH Map2193.7UniSTS
D2S2658  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,481,562 - 40,481,829UniSTSGRCh37
Build 36240,335,066 - 40,335,333RGDNCBI36
Celera240,322,349 - 40,322,611RGD
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map2p23-p22UniSTS
HuRef240,220,896 - 40,221,107UniSTS
Whitehead-YAC Contig Map2 UniSTS
STS-Z40873  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,487,956 - 40,488,011UniSTSGRCh37
Build 36240,341,460 - 40,341,515RGDNCBI36
Celera240,328,747 - 40,328,802RGD
Cytogenetic Map2p23-p22UniSTS
HuRef240,227,227 - 40,227,282UniSTS
GeneMap99-GB4 RH Map2128.13UniSTS
SLC8A1__3866  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37240,342,052 - 40,342,724UniSTSGRCh37
Build 36240,195,556 - 40,196,228RGDNCBI36
Celera240,182,988 - 40,183,660RGD
HuRef240,081,484 - 40,082,156UniSTS
D1S1425  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map6q25.2-q25.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map2p23-p22UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map17q22-q23UniSTS
Cytogenetic Map2p11.1UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map2p12-p11.2UniSTS
Cytogenetic Map3q11.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map1q32.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map18p11.3-p11.2UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map17q22-q23.2UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map2p24UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map12q24.32UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map15q11-q12UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q21.1-q21.2UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map4q31.21UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map10p15-p14UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map15q24-q25UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11q23.1-q23.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map16q24.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic MapXq21.1UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:9518
Count of miRNA genes:1442
Interacting mature miRNAs:1946
Transcripts:ENST00000332839, ENST00000402441, ENST00000403092, ENST00000405269, ENST00000405901, ENST00000406391, ENST00000406785, ENST00000407929, ENST00000408028, ENST00000417271, ENST00000448531, ENST00000455476, ENST00000542024, ENST00000542756
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 183 543 2 32 30 243 187 51 120 10 3 24
Low 1869 2285 962 183 1213 159 3137 1099 3337 312 846 1139 38 1136 1814 4
Below cutoff 339 156 754 432 320 299 1178 832 201 50 469 430 136 1 65 950

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001112800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001112801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001112802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006712082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006712083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006712084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006712085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB209075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC007254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC007281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC007377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC007877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC093586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC106048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF108388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF108389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF115505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK125406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX537482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF495666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF495765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M91368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M96368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X91213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X91214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X91215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X91216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X91217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X91221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X91614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X91647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X91815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X91963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y12878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y12885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000332839   ⟹   ENSP00000332931
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl240,115,253 - 40,430,280 (-)Ensembl
RefSeq Acc Id: ENST00000402441   ⟹   ENSP00000385188
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl240,115,113 - 40,512,435 (-)Ensembl
RefSeq Acc Id: ENST00000403092   ⟹   ENSP00000384763
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl240,115,031 - 40,512,361 (-)Ensembl
RefSeq Acc Id: ENST00000405269   ⟹   ENSP00000385535
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl240,115,250 - 40,611,053 (-)Ensembl
RefSeq Acc Id: ENST00000405901   ⟹   ENSP00000385678
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl240,115,045 - 40,430,304 (-)Ensembl
RefSeq Acc Id: ENST00000406391   ⟹   ENSP00000385811
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl240,115,253 - 40,430,280 (-)Ensembl
RefSeq Acc Id: ENST00000406785   ⟹   ENSP00000383886
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl240,097,270 - 40,452,069 (-)Ensembl
RefSeq Acc Id: ENST00000407929   ⟹   ENSP00000386116
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl240,114,731 - 40,430,271 (-)Ensembl
RefSeq Acc Id: ENST00000408028   ⟹   ENSP00000384908
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl240,115,253 - 40,430,280 (-)Ensembl
RefSeq Acc Id: ENST00000417271   ⟹   ENSP00000412560
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl240,430,061 - 40,452,008 (-)Ensembl
RefSeq Acc Id: ENST00000448531   ⟹   ENSP00000398575
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl240,430,020 - 40,512,435 (-)Ensembl
RefSeq Acc Id: ENST00000455476   ⟹   ENSP00000389330
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl240,430,020 - 40,453,438 (-)Ensembl
RefSeq Acc Id: NM_001112800   ⟹   NP_001106271
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,452,020 (-)NCBI
GRCh37240,339,286 - 40,739,575 (-)ENTREZGENE
HuRef240,078,719 - 40,478,536 (-)ENTREZGENE
CHM1_1240,269,776 - 40,587,799 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001112801   ⟹   NP_001106272
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,452,090 (-)NCBI
GRCh37240,339,286 - 40,739,575 (-)ENTREZGENE
HuRef240,078,719 - 40,478,536 (-)ENTREZGENE
CHM1_1240,269,776 - 40,587,799 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001112802   ⟹   NP_001106273
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,512,435 (-)NCBI
GRCh37240,339,286 - 40,739,575 (-)ENTREZGENE
HuRef240,078,719 - 40,478,536 (-)ENTREZGENE
CHM1_1240,269,776 - 40,669,965 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001252624   ⟹   NP_001239553
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,430,304 (-)NCBI
GRCh37240,339,286 - 40,739,575 (-)NCBI
HuRef240,078,719 - 40,478,536 (-)NCBI
CHM1_1240,269,776 - 40,587,799 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351483   ⟹   NP_001338412
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,452,090 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351484   ⟹   NP_001338413
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,452,090 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351485   ⟹   NP_001338414
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,451,684 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351486   ⟹   NP_001338415
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,452,090 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351487   ⟹   NP_001338416
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,452,090 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351488   ⟹   NP_001338417
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,451,684 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351489   ⟹   NP_001338418
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,451,684 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351490   ⟹   NP_001338419
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,452,090 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351491   ⟹   NP_001338420
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,452,090 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351492   ⟹   NP_001338421
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,451,684 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351493   ⟹   NP_001338422
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,452,090 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351494   ⟹   NP_001338423
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,452,090 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001372263   ⟹   NP_001359192
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,512,435 (-)NCBI
RefSeq Acc Id: NM_001394103   ⟹   NP_001381032
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,512,435 (-)NCBI
RefSeq Acc Id: NM_001394104   ⟹   NP_001381033
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,451,684 (-)NCBI
RefSeq Acc Id: NM_001394105   ⟹   NP_001381034
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,452,090 (-)NCBI
RefSeq Acc Id: NM_001394106   ⟹   NP_001381035
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,512,435 (-)NCBI
RefSeq Acc Id: NM_001394107   ⟹   NP_001381036
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,451,684 (-)NCBI
RefSeq Acc Id: NM_021097   ⟹   NP_066920
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,097,270 - 40,452,090 (-)NCBI
GRCh37240,339,286 - 40,739,575 (-)ENTREZGENE
Build 36240,192,790 - 40,510,948 (-)NCBI Archive
HuRef240,078,719 - 40,478,536 (-)ENTREZGENE
CHM1_1240,269,776 - 40,587,799 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001106271 (Get FASTA)   NCBI Sequence Viewer  
  NP_001106272 (Get FASTA)   NCBI Sequence Viewer  
  NP_001106273 (Get FASTA)   NCBI Sequence Viewer  
  NP_001239553 (Get FASTA)   NCBI Sequence Viewer  
  NP_001338412 (Get FASTA)   NCBI Sequence Viewer  
  NP_001338413 (Get FASTA)   NCBI Sequence Viewer  
  NP_001338414 (Get FASTA)   NCBI Sequence Viewer  
  NP_001338415 (Get FASTA)   NCBI Sequence Viewer  
  NP_001338416 (Get FASTA)   NCBI Sequence Viewer  
  NP_001338417 (Get FASTA)   NCBI Sequence Viewer  
  NP_001338418 (Get FASTA)   NCBI Sequence Viewer  
  NP_001338419 (Get FASTA)   NCBI Sequence Viewer  
  NP_001338420 (Get FASTA)   NCBI Sequence Viewer  
  NP_001338421 (Get FASTA)   NCBI Sequence Viewer  
  NP_001338422 (Get FASTA)   NCBI Sequence Viewer  
  NP_001338423 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359192 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381032 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381033 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381034 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381035 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381036 (Get FASTA)   NCBI Sequence Viewer  
  NP_066920 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA35702 (Get FASTA)   NCBI Sequence Viewer  
  AAD17213 (Get FASTA)   NCBI Sequence Viewer  
  AAD26362 (Get FASTA)   NCBI Sequence Viewer  
  AAF08987 (Get FASTA)   NCBI Sequence Viewer  
  AAF08988 (Get FASTA)   NCBI Sequence Viewer  
  AAF19235 (Get FASTA)   NCBI Sequence Viewer  
  AAF19237 (Get FASTA)   NCBI Sequence Viewer  
  AAH98285 (Get FASTA)   NCBI Sequence Viewer  
  AAH98308 (Get FASTA)   NCBI Sequence Viewer  
  AAX81985 (Get FASTA)   NCBI Sequence Viewer  
  BAD92312 (Get FASTA)   NCBI Sequence Viewer  
  BAF84385 (Get FASTA)   NCBI Sequence Viewer  
  CAA62923 (Get FASTA)   NCBI Sequence Viewer  
  CAA73378 (Get FASTA)   NCBI Sequence Viewer  
  CAA73386 (Get FASTA)   NCBI Sequence Viewer  
  CAA73477 (Get FASTA)   NCBI Sequence Viewer  
  CAA73478 (Get FASTA)   NCBI Sequence Viewer  
  CAD97765 (Get FASTA)   NCBI Sequence Viewer  
  EAX00331 (Get FASTA)   NCBI Sequence Viewer  
  EAX00332 (Get FASTA)   NCBI Sequence Viewer  
  EAX00333 (Get FASTA)   NCBI Sequence Viewer  
  EAX00334 (Get FASTA)   NCBI Sequence Viewer  
  EAX00335 (Get FASTA)   NCBI Sequence Viewer  
  EAX00336 (Get FASTA)   NCBI Sequence Viewer  
  P32418 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001106273   ⟸   NM_001112802
- Peptide Label: isoform D precursor
- UniProtKB: P32418 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001106272   ⟸   NM_001112801
- Peptide Label: isoform C precursor
- UniProtKB: P32418 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001106271   ⟸   NM_001112800
- Peptide Label: isoform B precursor
- UniProtKB: P32418 (UniProtKB/Swiss-Prot),   Q4QQH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_066920   ⟸   NM_021097
- Peptide Label: isoform A precursor
- UniProtKB: P32418 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001239553   ⟸   NM_001252624
- Peptide Label: isoform E precursor
- UniProtKB: P32418 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001338422   ⟸   NM_001351493
- Peptide Label: isoform E precursor
- Sequence:
RefSeq Acc Id: NP_001338419   ⟸   NM_001351490
- Peptide Label: isoform I precursor
- Sequence:
RefSeq Acc Id: NP_001338412   ⟸   NM_001351483
- Peptide Label: isoform F precursor
- Sequence:
RefSeq Acc Id: NP_001338423   ⟸   NM_001351494
- Peptide Label: isoform D precursor
- Sequence:
RefSeq Acc Id: NP_001338415   ⟸   NM_001351486
- Peptide Label: isoform G precursor
- Sequence:
RefSeq Acc Id: NP_001338420   ⟸   NM_001351491
- Peptide Label: isoform I precursor
- Sequence:
RefSeq Acc Id: NP_001338416   ⟸   NM_001351487
- Peptide Label: isoform H precursor
- Sequence:
RefSeq Acc Id: NP_001338413   ⟸   NM_001351484
- Peptide Label: isoform F precursor
- Sequence:
RefSeq Acc Id: NP_001338421   ⟸   NM_001351492
- Peptide Label: isoform I precursor
- Sequence:
RefSeq Acc Id: NP_001338417   ⟸   NM_001351488
- Peptide Label: isoform H precursor
- Sequence:
RefSeq Acc Id: NP_001338418   ⟸   NM_001351489
- Peptide Label: isoform H precursor
- Sequence:
RefSeq Acc Id: NP_001338414   ⟸   NM_001351485
- Peptide Label: isoform F precursor
- Sequence:
RefSeq Acc Id: NP_001359192   ⟸   NM_001372263
- Peptide Label: isoform A precursor
RefSeq Acc Id: ENSP00000332931   ⟸   ENST00000332839
RefSeq Acc Id: ENSP00000385188   ⟸   ENST00000402441
RefSeq Acc Id: ENSP00000389330   ⟸   ENST00000455476
RefSeq Acc Id: ENSP00000412560   ⟸   ENST00000417271
RefSeq Acc Id: ENSP00000384763   ⟸   ENST00000403092
RefSeq Acc Id: ENSP00000385535   ⟸   ENST00000405269
RefSeq Acc Id: ENSP00000385678   ⟸   ENST00000405901
RefSeq Acc Id: ENSP00000385811   ⟸   ENST00000406391
RefSeq Acc Id: ENSP00000383886   ⟸   ENST00000406785
RefSeq Acc Id: ENSP00000386116   ⟸   ENST00000407929
RefSeq Acc Id: ENSP00000384908   ⟸   ENST00000408028
RefSeq Acc Id: ENSP00000398575   ⟸   ENST00000448531
RefSeq Acc Id: NP_001381035   ⟸   NM_001394106
- Peptide Label: isoform D precursor
RefSeq Acc Id: NP_001381032   ⟸   NM_001394103
- Peptide Label: isoform A precursor
RefSeq Acc Id: NP_001381034   ⟸   NM_001394105
- Peptide Label: isoform H precursor
RefSeq Acc Id: NP_001381033   ⟸   NM_001394104
- Peptide Label: isoform B precursor
RefSeq Acc Id: NP_001381036   ⟸   NM_001394107
- Peptide Label: isoform D precursor
Protein Domains
Calx-beta   J   Na_Ca_ex

Promoters
RGD ID:6860162
Promoter ID:EPDNEW_H3246
Type:initiation region
Name:SLC8A1_3
Description:solute carrier family 8 member A1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H3247  EPDNEW_H3248  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,430,263 - 40,430,323EPDNEW
RGD ID:6860164
Promoter ID:EPDNEW_H3247
Type:initiation region
Name:SLC8A1_1
Description:solute carrier family 8 member A1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H3246  EPDNEW_H3248  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,452,056 - 40,452,116EPDNEW
RGD ID:6860166
Promoter ID:EPDNEW_H3248
Type:initiation region
Name:SLC8A1_2
Description:solute carrier family 8 member A1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H3246  EPDNEW_H3247  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38240,512,390 - 40,512,450EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2p22.1(chr2:39979140-40669741)x3 copy number gain See cases [RCV000051046] Chr2:39979140..40669741 [GRCh38]
Chr2:40206280..40896881 [GRCh37]
Chr2:40059784..40750385 [NCBI36]
Chr2:2p22.1
uncertain significance
GRCh38/hg38 2p25.3-16.1(chr2:66097-55570637)x3 copy number gain See cases [RCV000052933] Chr2:66097..55570637 [GRCh38]
Chr2:66097..55797773 [GRCh37]
Chr2:56097..55651277 [NCBI36]
Chr2:2p25.3-16.1
pathogenic
GRCh38/hg38 2p22.3-21(chr2:32849247-45016061)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052942]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052942]|See cases [RCV000052942] Chr2:32849247..45016061 [GRCh38]
Chr2:33074314..45243200 [GRCh37]
Chr2:32927818..45096704 [NCBI36]
Chr2:2p22.3-21
pathogenic
NM_001112800.1(SLC8A1):c.2104G>A (p.Gly702Arg) single nucleotide variant Malignant melanoma [RCV000065590] Chr2:40164904 [GRCh38]
Chr2:40392044 [GRCh37]
Chr2:40245548 [NCBI36]
Chr2:2p22.1
not provided
NM_001112800.1(SLC8A1):c.1995G>A (p.Pro665=) single nucleotide variant Malignant melanoma [RCV000065591] Chr2:40170309 [GRCh38]
Chr2:40397449 [GRCh37]
Chr2:40250953 [NCBI36]
Chr2:2p22.1
not provided
NM_001112800.1(SLC8A1):c.1462G>A (p.Asp488Asn) single nucleotide variant Malignant melanoma [RCV000065592] Chr2:40428819 [GRCh38]
Chr2:40655959 [GRCh37]
Chr2:40509463 [NCBI36]
Chr2:2p22.1
not provided
NM_001112800.1(SLC8A1):c.498C>T (p.Leu166=) single nucleotide variant Malignant melanoma [RCV000060568] Chr2:40429783 [GRCh38]
Chr2:40656923 [GRCh37]
Chr2:40510427 [NCBI36]
Chr2:2p22.1
not provided
GRCh38/hg38 2p22.2-21(chr2:37000557-41954686)x1 copy number loss See cases [RCV000139443] Chr2:37000557..41954686 [GRCh38]
Chr2:37227700..42181826 [GRCh37]
Chr2:37081204..42035330 [NCBI36]
Chr2:2p22.2-21
pathogenic
GRCh38/hg38 2p25.1-11.2(chr2:7495123-87705899)x3 copy number gain See cases [RCV000141494] Chr2:7495123..87705899 [GRCh38]
Chr2:7635254..88005418 [GRCh37]
Chr2:7552705..87786533 [NCBI36]
Chr2:2p25.1-11.2
benign
GRCh38/hg38 2p25.3-21(chr2:236816-45983232)x3 copy number gain See cases [RCV000143682] Chr2:236816..45983232 [GRCh38]
Chr2:236816..46210371 [GRCh37]
Chr2:226816..46063875 [NCBI36]
Chr2:2p25.3-21
pathogenic
GRCh37/hg19 2p23.3-16.1(chr2:27861707-60790985)x3 copy number gain See cases [RCV000454271] Chr2:27861707..60790985 [GRCh37]
Chr2:2p23.3-16.1
pathogenic
GRCh37/hg19 2p23.2-21(chr2:28069882-43543420)x3 copy number gain See cases [RCV000447397] Chr2:28069882..43543420 [GRCh37]
Chr2:2p23.2-21
pathogenic
GRCh37/hg19 2p22.1(chr2:39987132-40349524)x1 copy number loss See cases [RCV000445771] Chr2:39987132..40349524 [GRCh37]
Chr2:2p22.1
uncertain significance
GRCh37/hg19 2p22.1(chr2:39987132-40347064)x1 copy number loss See cases [RCV000445709] Chr2:39987132..40347064 [GRCh37]
Chr2:2p22.1
uncertain significance
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) copy number gain See cases [RCV000512056] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
NC_000002.11:g.38121110_47669522inv inversion Lynch syndrome [RCV000494356] Chr2:38121110..47669522 [GRCh37]
Chr2:2p22.2-21
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 copy number gain See cases [RCV000511212] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
t(2;2)(p23;p21)(hg19 chr2:g.42552694::ochr2:g.29446394) inversion Small cell lung carcinoma [RCV000576833] Chr2:29446394..42552694 [GRCh37]
Chr2:2p23.2-21
pathogenic
inv(2)(p21p23.2) inversion Endometrial carcinoma [RCV000659263] Chr2:29447680..42554394 [GRCh37]
Chr2:2p23.2-21
likely pathogenic
GRCh37/hg19 2p22.3-16.1(chr2:34792916-56676541)x3 copy number gain not provided [RCV000682169] Chr2:34792916..56676541 [GRCh37]
Chr2:2p22.3-16.1
pathogenic
Single allele inversion not provided [RCV000714264] Chr2:40608411..146900718 [GRCh37]
Chr2:2p22.1-q22.3
likely pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 copy number gain not provided [RCV000752804] Chr2:15672..243101834 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 copy number gain not provided [RCV000752802] Chr2:14238..243048760 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2p24.1-16.3(chr2:22665048-52850368)x3 copy number gain not provided [RCV000752875] Chr2:22665048..52850368 [GRCh37]
Chr2:2p24.1-16.3
pathogenic
GRCh37/hg19 2p22.1(chr2:40612503-40614700)x1 copy number loss not provided [RCV000740389] Chr2:40612503..40614700 [GRCh37]
Chr2:2p22.1
benign
NM_021097.4(SLC8A1):c.5A>T (p.Tyr2Phe) single nucleotide variant not provided [RCV000923916] Chr2:40430276 [GRCh38]
Chr2:40657416 [GRCh37]
Chr2:2p22.1
likely benign
NM_021097.4(SLC8A1):c.1008G>A (p.Lys336=) single nucleotide variant not provided [RCV000920876] Chr2:40429273 [GRCh38]
Chr2:40656413 [GRCh37]
Chr2:2p22.1
likely benign
NM_021097.4(SLC8A1):c.1713C>T (p.Ile571=) single nucleotide variant not provided [RCV000927437] Chr2:40428568 [GRCh38]
Chr2:40655708 [GRCh37]
Chr2:2p22.1
likely benign
NM_021097.4(SLC8A1):c.2256C>T (p.Ile752=) single nucleotide variant not provided [RCV000900841] Chr2:40160778 [GRCh38]
Chr2:40387918 [GRCh37]
Chr2:2p22.1
likely benign
NM_021097.4(SLC8A1):c.1563C>T (p.Leu521=) single nucleotide variant not provided [RCV000906683] Chr2:40428718 [GRCh38]
Chr2:40655858 [GRCh37]
Chr2:2p22.1
benign
NM_021097.4(SLC8A1):c.2785C>A (p.Arg929=) single nucleotide variant not provided [RCV000910252] Chr2:40115390 [GRCh38]
Chr2:40342530 [GRCh37]
Chr2:2p22.1
benign
NM_021097.4(SLC8A1):c.2625G>A (p.Ala875=) single nucleotide variant not provided [RCV000917396] Chr2:40115550 [GRCh38]
Chr2:40342690 [GRCh37]
Chr2:2p22.1
benign
NM_021097.4(SLC8A1):c.2451C>T (p.Phe817=) single nucleotide variant not provided [RCV000919278] Chr2:40139495 [GRCh38]
Chr2:40366635 [GRCh37]
Chr2:2p22.1
likely benign
GRCh38/hg38 2p22.1(chr2:39852759-40111879)x1 copy number loss See cases [RCV000138970] Chr2:39852759..40111879 [GRCh38]
Chr2:40079899..40339019 [GRCh37]
Chr2:39933403..40192523 [NCBI36]
Chr2:2p22.1
likely benign
NC_000002.11:g.39053852_42501893dup duplication Neurodevelopmental disorder [RCV000787462] Chr2:39053852..42501893 [GRCh37]
Chr2:2p22.1-21
likely pathogenic
NM_021097.4(SLC8A1):c.2715C>A (p.Gly905=) single nucleotide variant not provided [RCV000962852] Chr2:40115460 [GRCh38]
Chr2:40342600 [GRCh37]
Chr2:2p22.1
benign
NM_021097.4(SLC8A1):c.2040C>T (p.Asp680=) single nucleotide variant not provided [RCV000910253] Chr2:40164983 [GRCh38]
Chr2:40392123 [GRCh37]
Chr2:2p22.1
likely benign
GRCh37/hg19 2p22.1(chr2:40351736-40879491)x3 copy number gain not provided [RCV001258536] Chr2:40351736..40879491 [GRCh37]
Chr2:2p22.1
uncertain significance
NM_021097.4(SLC8A1):c.1808+9112_1808+31346del deletion Aganglionic megacolon [RCV001290043] Chr2:40397127..40419361 [GRCh38]
Chr2:40624267..40646501 [GRCh37]
Chr2:2p22.1
likely pathogenic
GRCh37/hg19 2p23.3-21(chr2:24881528-43460021)x3 copy number gain not provided [RCV001532444] Chr2:24881528..43460021 [GRCh37]
Chr2:2p23.3-21
likely pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:11068 AgrOrtholog
COSMIC SLC8A1 COSMIC
Ensembl Genes ENSG00000183023 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000332931 UniProtKB/Swiss-Prot
  ENSP00000383886 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000384763 UniProtKB/Swiss-Prot
  ENSP00000384908 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000385188 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000385535 UniProtKB/Swiss-Prot
  ENSP00000385678 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000385811 UniProtKB/Swiss-Prot
  ENSP00000386116 UniProtKB/TrEMBL
  ENSP00000389330 UniProtKB/TrEMBL
  ENSP00000398575 UniProtKB/TrEMBL
  ENSP00000412560 UniProtKB/TrEMBL
Ensembl Transcript ENST00000332839 UniProtKB/Swiss-Prot
  ENST00000402441 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000403092 UniProtKB/Swiss-Prot
  ENST00000405269 UniProtKB/Swiss-Prot
  ENST00000405901 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000406391 UniProtKB/Swiss-Prot
  ENST00000406785 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000407929 UniProtKB/TrEMBL
  ENST00000408028 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000417271 UniProtKB/TrEMBL
  ENST00000448531 UniProtKB/TrEMBL
  ENST00000455476 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.2030 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000183023 GTEx
HGNC ID HGNC:11068 ENTREZGENE
Human Proteome Map SLC8A1 Human Proteome Map
InterPro CalX-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calx_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DnaJ_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na_Ca_Ex UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na_Ca_Ex_C-exten UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NaCa_exhngr1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NaCa_Exmemb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:6546 UniProtKB/Swiss-Prot
NCBI Gene 6546 ENTREZGENE
OMIM 182305 OMIM
Pfam Calx-beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na_Ca_ex UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na_Ca_ex_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA314 PharmGKB
PRINTS NACAEXCHNGR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NACAEXCHNGR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE DNAJ_2 UniProtKB/TrEMBL
SMART Calx_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF141072 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs caca UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E7EV41_HUMAN UniProtKB/TrEMBL
  E9PB98_HUMAN UniProtKB/TrEMBL
  E9PCL8_HUMAN UniProtKB/TrEMBL
  NAC1_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q4QQH3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A8K6N1 UniProtKB/Swiss-Prot
  D6W595 UniProtKB/Swiss-Prot
  O95849 UniProtKB/Swiss-Prot
  Q4QQG6 UniProtKB/Swiss-Prot
  Q587I6 UniProtKB/Swiss-Prot
  Q59GN4 UniProtKB/Swiss-Prot
  Q9UBL8 UniProtKB/Swiss-Prot
  Q9UD55 UniProtKB/Swiss-Prot
  Q9UDN1 UniProtKB/Swiss-Prot
  Q9UDN2 UniProtKB/Swiss-Prot
  Q9UKX6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-29 SLC8A1  solute carrier family 8 member A1  SLC8A1  solute carrier family 8 member 1  Symbol and/or name change 5135510 APPROVED
2016-02-23 SLC8A1  solute carrier family 8 member 1  SLC8A1  solute carrier family 8 (sodium/calcium exchanger), member 1  Symbol and/or name change 5135510 APPROVED