Tacr1 (tachykinin receptor 1) - Rat Genome Database
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Gene: Tacr1 (tachykinin receptor 1) Mus musculus
Analyze
Symbol: Tacr1
Name: tachykinin receptor 1
RGD ID: 731009
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Used to study attention deficit hyperactivity disorder. Human ortholog(s) of this gene implicated in exercise-induced bronchoconstriction. Orthologous to human TACR1 (tachykinin receptor 1).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: neurokinin receptor 1; NK-; NK-1R; NK1; Nk1 receptor; NK1-R; Nk1r; SPr; substance P receptor; substance-P receptor; Tac; Tac1r
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39682,378,990 - 82,537,085 (+)NCBIGRCm39mm39
GRCm39 Ensembl682,379,315 - 82,537,085 (+)Ensembl
GRCm38682,402,003 - 82,560,104 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl682,402,334 - 82,560,104 (+)EnsemblGRCm38mm10GRCm38
MGSCv37682,352,469 - 82,510,098 (+)NCBIGRCm37mm9NCBIm37
MGSCv36682,368,133 - 82,525,757 (+)NCBImm8
Celera684,384,420 - 84,542,486 (+)NCBICelera
Cytogenetic Map6C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-amphetamine  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,2-naphthoquinone  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
acetamide  (ISO)
aflatoxin B1  (ISO)
alpha-amyrin  (EXP)
ammonium chloride  (ISO)
aprepitant  (EXP,ISO)
arsenite(3-)  (EXP)
benzo[a]pyrene  (EXP,ISO)
beta-amyrin  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
C60 fullerene  (ISO)
cadmium atom  (ISO)
capsaicin  (EXP,ISO)
capsazepine  (EXP)
casopitant  (ISO)
clothianidin  (ISO)
cocaine  (EXP)
cyclophosphamide  (EXP,ISO)
dextran sulfate  (EXP)
dioxygen  (EXP)
dobutamine  (ISO)
dydrogesterone  (EXP)
famotidine  (EXP)
fenvalerate  (ISO)
folic acid  (EXP)
furan  (ISO)
gentamycin  (ISO)
hydrogen chloride  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
Mecamylamine  (ISO)
methyllycaconitine  (ISO)
morphine  (ISO)
nicotine  (ISO)
nitroprusside  (ISO)
omeprazole  (EXP)
phenyl biguanide  (ISO)
phenylarsine oxide  (ISO)
phenylephrine  (ISO)
sodium arsenite  (EXP)
sodium cyanide  (ISO)
sucrose  (ISO)
suramin  (ISO)
taurine  (ISO)
testosterone  (ISO)
titanium dioxide  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
acute inflammatory response  (ISO)
aggressive behavior  (ISO)
angiotensin-mediated drinking behavior  (ISO)
associative learning  (ISO)
behavioral response to pain  (ISO)
eating behavior  (ISO)
G protein-coupled receptor signaling pathway  (IEA)
learning or memory  (ISO)
long-term memory  (ISO)
operant conditioning  (ISO)
positive regulation of action potential  (ISO)
positive regulation of blood pressure  (ISO)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of epithelial cell migration  (ISO)
positive regulation of epithelial cell proliferation  (ISO)
positive regulation of flagellated sperm motility  (IBA,ISO)
positive regulation of hormone secretion  (ISO)
positive regulation of leukocyte migration  (ISO)
positive regulation of lymphocyte proliferation  (ISO)
positive regulation of ossification  (ISO)
positive regulation of renal sodium excretion  (ISO)
positive regulation of saliva secretion  (ISO)
positive regulation of stress fiber assembly  (ISO)
positive regulation of synaptic transmission, cholinergic  (ISO)
positive regulation of synaptic transmission, GABAergic  (ISO)
positive regulation of uterine smooth muscle contraction  (ISO)
positive regulation of vascular permeability  (ISO)
positive regulation of vasoconstriction  (ISO)
regulation of blood pressure  (ISO)
regulation of smooth muscle cell migration  (ISO)
regulation of smooth muscle cell proliferation  (ISO)
regulation of uterine smooth muscle contraction  (IDA)
response to auditory stimulus  (ISO)
response to electrical stimulus  (ISO)
response to estradiol  (ISO)
response to ethanol  (ISO)
response to heat  (ISO)
response to hormone  (ISO)
response to morphine  (ISO)
response to nicotine  (ISO)
response to organic cyclic compound  (ISO)
response to ozone  (ISO)
response to pain  (IMP)
response to progesterone  (ISO)
sensory perception of pain  (ISO)
signal transduction  (IEA)
smooth muscle contraction involved in micturition  (ISO)
sperm ejaculation  (ISO)
tachykinin receptor signaling pathway  (ISO)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
1. Adcock IM, etal., J Mol Endocrinol. 1993 Aug;11(1):1-7.
2. Ansar S, etal., J Neurosurg. 2007 May;106(5):881-6.
3. Bregeon F, etal., J Physiol. 2010 Apr 15;588(Pt 8):1309-19. Epub 2010 Feb 22.
4. Camargo EA, etal., Pancreas. 2008 Jul;37(1):50-5.
5. Chen CY, etal., J Neurosci. 2009 Mar 4;29(9):2754-61.
6. Chen MJ and Lai YL, Toxicol Appl Pharmacol. 2003 Mar 15;187(3):178-85.
7. De Swert KO, etal., Respir Res. 2009 May 15;10:37.
8. Dib M, etal., Am J Physiol Lung Cell Mol Physiol. 2009 Oct;297(4):L687-97. Epub 2009 Jul 24.
9. Evangelista S, etal., Neuropeptides. 2008 Oct-Dec;42(5-6):663-70. Epub 2008 Aug 19.
10. Hegde A, etal., J Leukoc Biol. 2007 Sep;82(3):678-85. Epub 2007 Jun 12.
11. Hu CP, etal., Mediators Inflamm. 2006;2006(5):84829.
12. Ichinose M, etal., Am J Respir Crit Care Med. 1996 Mar;153(3):936-41.
13. Joachim RA, etal., Psychosom Med. 2004 Jul-Aug;66(4):564-71.
14. Karagiannides I, etal., Endocrinology. 2011 Jun;152(6):2197-205. Epub 2011 Apr 5.
15. Koeda T, etal., J Physiol Sci. 2007 Dec;57(6):361-6. Epub 2007 Dec 4.
16. Lau HY and Bhatia M, J Pathol. 2006 Feb;208(3):364-71.
17. Li PC, etal., Am J Physiol Lung Cell Mol Physiol. 2008 May;294(5):L912-20. Epub 2008 Mar 7.
18. Lin MJ, etal., Zhonghua Jie He He Hu Xi Za Zhi. 2005 Dec;28(12):820-4.
19. Linares-Fernandez BE and Alfieri AB, J Urol. 2007 Apr;177(4):1531-6.
20. Matsubara S, etal., Am J Respir Cell Mol Biol. 2008 May;38(5):501-8. Epub 2007 Dec 6.
21. McKay LC and Feldman JL, Am J Respir Crit Care Med. 2008 Jul 1;178(1):89-95. Epub 2008 Apr 17.
22. MGD and Homologene mouse data transfer
23. MGD data from the GO Consortium
24. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
25. Pacharinsak C, etal., Pain. 2008 Sep 30;139(1):34-46. Epub 2008 Apr 14.
26. Piedimonte G, etal., Am J Physiol. 1999 Oct;277(4 Pt 1):L831-40.
27. Pipeline to import KEGG annotations from KEGG into RGD
28. RGD automated import pipeline
29. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
30. RGD automated import pipeline for gene-chemical interactions
31. Shi X, etal., Zhongguo Wei Zhong Bing Ji Jiu Yi Xue. 2003 Jul;15(7):422-5.
32. Sio SW, etal., Am J Respir Crit Care Med. 2010 Jan 1;181(1):36-46. Epub 2009 Oct 1.
33. Sio SW, etal., J Immunol. 2008 Jun 15;180(12):8333-41.
34. Wang Y, etal., Am J Physiol Regul Integr Comp Physiol. 2008 May;294(5):R1517-23. Epub 2008 Mar 12.
35. Xue J, etal., Zhonghua Er Bi Yan Hou Ke Za Zhi. 2000 Aug;35(4):247-50.
36. Zhang X, etal., Am J Physiol Regul Integr Comp Physiol. 2008 Dec;295(6):R2084-96. Epub 2008 Oct 22.
Additional References at PubMed
PMID:1370937   PMID:7545574   PMID:8120392   PMID:8717372   PMID:8781237   PMID:9537323   PMID:9541482   PMID:9748515   PMID:10229849   PMID:10349636   PMID:10444554   PMID:10564361  
PMID:10600814   PMID:10702392   PMID:10718319   PMID:10739640   PMID:10799908   PMID:10817594   PMID:10821273   PMID:10854767   PMID:10954331   PMID:11042159   PMID:11076861   PMID:11157089  
PMID:11166975   PMID:11172050   PMID:11217851   PMID:11433347   PMID:11465604   PMID:11581159   PMID:11588191   PMID:11727773   PMID:11738504   PMID:11805341   PMID:11815370   PMID:12010776  
PMID:12217852   PMID:12231654   PMID:12383972   PMID:12388184   PMID:12473075   PMID:12477932   PMID:12492418   PMID:12499446   PMID:12527475   PMID:12535787   PMID:12594288   PMID:12773411  
PMID:12801882   PMID:12867261   PMID:12902513   PMID:12967989   PMID:14500676   PMID:14513037   PMID:14614952   PMID:14614953   PMID:14622216   PMID:14625445   PMID:14635705   PMID:14681479  
PMID:14988833   PMID:15042514   PMID:15084523   PMID:15100316   PMID:15145704   PMID:15158076   PMID:15208590   PMID:15236323   PMID:15381281   PMID:15458971   PMID:15494183   PMID:15499026  
PMID:15590676   PMID:15618168   PMID:15647454   PMID:15763273   PMID:15813946   PMID:15814105   PMID:15964684   PMID:15972963   PMID:16141072   PMID:16141073   PMID:16269189   PMID:16272337  
PMID:16388914   PMID:16580093   PMID:16602821   PMID:16799078   PMID:16873893   PMID:16919985   PMID:16942803   PMID:16987237   PMID:17041011   PMID:17105911   PMID:17122055   PMID:17251415  
PMID:17331215   PMID:17434199   PMID:17513750   PMID:17519035   PMID:17597603   PMID:17640568   PMID:17692507   PMID:17697146   PMID:17869190   PMID:17895403   PMID:17914449   PMID:17941913  
PMID:18198276   PMID:18203709   PMID:18272695   PMID:18276852   PMID:18279320   PMID:18287559   PMID:18325388   PMID:18441096   PMID:18523290   PMID:18576810   PMID:18596216   PMID:18977217  
PMID:18987361   PMID:18991860   PMID:19029029   PMID:19029199   PMID:19204064   PMID:19578380   PMID:19682209   PMID:19887680   PMID:19906978   PMID:19914183   PMID:19940179   PMID:20426532  
PMID:20631175   PMID:20680010   PMID:20730802   PMID:20889569   PMID:20926798   PMID:21048147   PMID:21106239   PMID:21408181   PMID:21562162   PMID:21596993   PMID:21677750   PMID:21873635  
PMID:21878523   PMID:21918196   PMID:22009727   PMID:22019828   PMID:22040127   PMID:22155476   PMID:22346746   PMID:22363567   PMID:22392530   PMID:22427743   PMID:22471406   PMID:22674265  
PMID:22687356   PMID:22723691   PMID:22884624   PMID:22958821   PMID:23041339   PMID:23089640   PMID:23103168   PMID:23312518   PMID:23365459   PMID:23499760   PMID:23516556   PMID:23626716  
PMID:23681253   PMID:23792204   PMID:23843537   PMID:24448713   PMID:24952961   PMID:25063231   PMID:25074741   PMID:25209287   PMID:25301750   PMID:25366726   PMID:25558794   PMID:25703442  
PMID:25830923   PMID:25834049   PMID:25871534   PMID:26223840   PMID:26319240   PMID:26522842   PMID:27712014   PMID:27798158   PMID:27810937   PMID:28150369   PMID:28460633   PMID:28583412  
PMID:28673722   PMID:29192291   PMID:29459872   PMID:29462275   PMID:29972353   PMID:30472211   PMID:30487221   PMID:31122949   PMID:31152445   PMID:31358823   PMID:32160549   PMID:32289251  
PMID:32712019   PMID:33051347   PMID:33238113  


Genomics

Comparative Map Data
Tacr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39682,378,990 - 82,537,085 (+)NCBIGRCm39mm39
GRCm39 Ensembl682,379,315 - 82,537,085 (+)Ensembl
GRCm38682,402,003 - 82,560,104 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl682,402,334 - 82,560,104 (+)EnsemblGRCm38mm10GRCm38
MGSCv37682,352,469 - 82,510,098 (+)NCBIGRCm37mm9NCBIm37
MGSCv36682,368,133 - 82,525,757 (+)NCBImm8
Celera684,384,420 - 84,542,486 (+)NCBICelera
Cytogenetic Map6C3NCBI
TACR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl275,046,463 - 75,199,520 (-)EnsemblGRCh38hg38GRCh38
GRCh38275,046,463 - 75,199,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37275,273,590 - 75,426,646 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36275,129,738 - 75,279,781 (-)NCBINCBI36hg18NCBI36
Build 34275,189,817 - 75,337,838NCBI
Celera275,104,880 - 75,257,954 (-)NCBI
Cytogenetic Map2p12NCBI
HuRef275,010,440 - 75,164,411 (-)NCBIHuRef
CHM1_1275,202,888 - 75,356,007 (-)NCBICHM1_1
Tacr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24114,920,844 - 115,089,733 (+)NCBI
Rnor_6.0 Ensembl4113,247,795 - 113,414,504 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04113,247,236 - 113,416,139 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04177,926,094 - 178,095,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44116,610,595 - 116,780,394 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14116,855,058 - 117,024,964 (+)NCBI
Celera4103,918,032 - 104,086,347 (+)NCBICelera
Cytogenetic Map4q34NCBI
Tacr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542410,614,340 - 10,761,872 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542410,614,340 - 10,761,872 (+)NCBIChiLan1.0ChiLan1.0
TACR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A76,614,478 - 76,771,018 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A76,614,478 - 76,771,018 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A75,111,339 - 75,267,320 (-)NCBIMhudiblu_PPA_v0panPan3
TACR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1748,038,010 - 48,178,971 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11748,038,010 - 48,178,971 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tacr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365561,266,621 - 1,421,271 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TACR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl367,839,411 - 68,021,728 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1367,839,367 - 68,021,733 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TACR1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11432,080,319 - 32,236,556 (+)NCBI
ChlSab1.1 Ensembl1432,083,615 - 32,233,596 (+)Ensembl
Tacr1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474928,243,667 - 28,455,012 (+)NCBI

Position Markers
RH127103  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38682,454,614 - 82,454,861UniSTSGRCm38
MGSCv37682,404,608 - 82,404,855UniSTSGRCm37
Celera684,436,535 - 84,436,782UniSTS
Cytogenetic Map6D1UniSTS
Whitehead/MRC_RH6844.07UniSTS
Tacr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37682,353,604 - 82,353,810UniSTSGRCm37
Celera684,385,555 - 84,385,761UniSTS
Cytogenetic Map6D1UniSTS
cM Map6 UniSTS
D4MGH17  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38682,403,489 - 82,403,624UniSTSGRCm38
MGSCv37682,353,483 - 82,353,618UniSTSGRCm37
Celera684,385,434 - 84,385,569UniSTS
Cytogenetic Map6D1UniSTS
Tacr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38682,403,610 - 82,403,816UniSTSGRCm38
MGSCv37682,353,604 - 82,353,810UniSTSGRCm37
Celera684,385,555 - 84,385,761UniSTS
Cytogenetic Map6D1UniSTS
cM Map6 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1118
Count of miRNA genes:563
Interacting mature miRNAs:712
Transcripts:ENSMUST00000032122
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000032122   ⟹   ENSMUSP00000032122
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl682,402,475 - 82,560,099 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203775   ⟹   ENSMUSP00000145217
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl682,402,787 - 82,560,104 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205041
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl682,402,334 - 82,405,364 (+)Ensembl
RefSeq Acc Id: NM_009313   ⟹   NP_033339
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39682,379,456 - 82,537,085 (+)NCBI
GRCm38682,402,475 - 82,560,104 (+)NCBI
MGSCv37682,352,469 - 82,510,098 (+)RGD
Celera684,384,420 - 84,542,486 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505863   ⟹   XP_006505926
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39682,378,990 - 82,537,085 (+)NCBI
GRCm38682,402,003 - 82,560,104 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505864   ⟹   XP_006505927
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39682,379,223 - 82,537,085 (+)NCBI
GRCm38682,402,235 - 82,560,104 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505865   ⟹   XP_006505928
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39682,379,382 - 82,537,085 (+)NCBI
GRCm38682,402,364 - 82,560,104 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033339   ⟸   NM_009313
- UniProtKB: P30548 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505926   ⟸   XM_006505863
- Peptide Label: isoform X1
- UniProtKB: P30548 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505927   ⟸   XM_006505864
- Peptide Label: isoform X1
- UniProtKB: P30548 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505928   ⟸   XM_006505865
- Peptide Label: isoform X1
- UniProtKB: P30548 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000145217   ⟸   ENSMUST00000203775
RefSeq Acc Id: ENSMUSP00000032122   ⟸   ENSMUST00000032122
Protein Domains
G_PROTEIN_RECEP_F1_2

Promoters
RGD ID:6890092
Promoter ID:EPDNEW_M8496
Type:single initiation site
Name:Tacr1_1
Description:Mus musculus tachykinin receptor 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38682,403,037 - 82,403,097EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98475 AgrOrtholog
Ensembl Genes ENSMUSG00000030043 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000032122 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000145217 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000032122 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000203775 UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neurokn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NK1_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:21336 UniProtKB/Swiss-Prot
MGD MGI:98475 ENTREZGENE
NCBI Gene 21336 ENTREZGENE
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tacr1 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NEUROKININ1R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NEUROKININR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot
UniProt NK1R_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3V353_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8BYR7 UniProtKB/Swiss-Prot