Hsf1 (heat shock factor 1) - Rat Genome Database

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Gene: Hsf1 (heat shock factor 1) Mus musculus
Analyze
Symbol: Hsf1
Name: heat shock factor 1
RGD ID: 730996
MGI Page MGI
Description: Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and chromatin binding activity. Involved in positive regulation of cold-induced thermogenesis and positive regulation of gene expression. Acts upstream of or within several processes, including embryo development; gamete generation; and negative regulation of tumor necrosis factor production. Located in cytoplasm and pronucleus. Part of protein-containing complex. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and immune system. Human ortholog(s) of this gene implicated in Huntington's disease. Orthologous to human HSF1 (heat shock transcription factor 1); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AA960185; heat shock factor protein 1; heat shock transcription factor 1; heat shock transcription factor 1 alpha isoform; heat shock transcription factor 1 beta isoform; heat shock transcription factor 1 gammaalpha isoform; heat shock transcription factor 1 gammabeta isoform; HSF 1; Hsf1alpha; Hsf1beta; Hsf1gammaalpha; Hsf1gammabeta; HSTF; HSTF 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,361,562 - 76,385,355 (+)NCBIGRCm39mm39
GRCm39 Ensembl1576,361,622 - 76,386,113 (+)Ensembl
GRCm381576,477,362 - 76,501,155 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,477,422 - 76,501,913 (+)EnsemblGRCm38mm10GRCm38
MGSCv371576,307,875 - 76,331,402 (+)NCBIGRCm37mm9NCBIm37
MGSCv361576,304,700 - 76,328,227 (+)NCBImm8
Celera1577,977,956 - 78,001,512 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1535.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(20S)-ginsenoside Rg3  (ISO)
(R)-adrenaline  (ISO)
(Z)-ligustilide  (ISO)
1,3,5-trinitro-1,3,5-triazinane  (ISO)
15-deoxy-Delta(12,14)-prostaglandin J2  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2-nitrofluorene  (ISO)
2-tert-butylhydroquinone  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
7H-xanthine  (ISO)
9H-xanthine  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
amphibole asbestos  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
arsenite(3-)  (EXP,ISO)
arsenous acid  (ISO)
Aurin  (ISO)
benzene  (EXP)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (ISO)
bortezomib  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (ISO)
Calcimycin  (ISO)
capsaicin  (ISO)
carbonyl cyanide p-trifluoromethoxyphenylhydrazone  (ISO)
celastrol  (ISO)
cobalt atom  (EXP)
cobalt dichloride  (ISO)
cocaine  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
dexamethasone  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
doxorubicin  (EXP,ISO)
ethanol  (EXP)
fenofibrate  (ISO)
flavonoids  (ISO)
fulvestrant  (EXP)
geldanamycin  (ISO)
gentamycin  (EXP,ISO)
gold atom  (ISO)
gold(0)  (ISO)
homocysteic acid  (ISO)
hydrogen chloride  (EXP)
hydrogen peroxide  (ISO)
ibuprofen  (ISO)
indometacin  (EXP,ISO)
lactacystin  (ISO)
lead diacetate  (EXP)
linalool  (ISO)
LY294002  (ISO)
maneb  (EXP)
melatonin  (EXP)
mercury atom  (ISO)
mercury dichloride  (ISO)
mercury(0)  (ISO)
methapyrilene  (ISO)
mifepristone  (EXP)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nickel sulfate  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
pyocyanine  (ISO)
quercetin  (EXP,ISO)
resveratrol  (ISO)
rivastigmine  (ISO)
rotenone  (ISO)
SB 203580  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
silver(1+) nitrate  (ISO)
simvastatin  (ISO)
sodium arsenite  (EXP,ISO)
Sodium salicylate  (ISO)
solanesol  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
tanespimycin  (ISO)
teprenone  (EXP)
tetrachloroethene  (EXP)
tetrachloromethane  (ISO)
thalidomide  (EXP)
thioacetamide  (ISO)
thiopental  (ISO)
valproic acid  (EXP,ISO)
wortmannin  (ISO)
zinc atom  (ISO)
zinc pyrithione  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cellular protein-containing complex assembly  (ISO)
cellular response to amino acid stimulus  (ISO)
cellular response to angiotensin  (ISO)
cellular response to cadmium ion  (ISO)
cellular response to copper ion  (ISO)
cellular response to diamide  (ISO)
cellular response to DNA damage stimulus  (IEA)
cellular response to estradiol stimulus  (ISO)
cellular response to gamma radiation  (ISO)
cellular response to heat  (ISO)
cellular response to hydrogen peroxide  (ISO)
cellular response to L-glutamine  (ISO)
cellular response to lipopolysaccharide  (ISO)
cellular response to nitroglycerin  (ISO)
cellular response to organic cyclic compound  (ISO)
cellular response to potassium ion  (ISO)
cellular response to radiation  (ISO)
cellular response to sodium arsenite  (ISO)
cellular response to unfolded protein  (ISO)
cellular response to xenobiotic stimulus  (ISO)
defense response  (ISO)
DNA repair  (IEA)
embryonic placenta development  (IMP)
embryonic process involved in female pregnancy  (IMP)
female meiotic nuclear division  (IMP)
in utero embryonic development  (IMP)
MAPK cascade  (ISO)
mRNA processing  (IEA)
mRNA transcription  (ISO)
mRNA transport  (IEA)
negative regulation of cardiac muscle cell apoptotic process  (ISO)
negative regulation of cell population proliferation  (IGI)
negative regulation of double-strand break repair via nonhomologous end joining  (ISO)
negative regulation of gene expression  (ISO)
negative regulation of inclusion body assembly  (ISO)
negative regulation of neuron death  (ISO)
negative regulation of protein-containing complex assembly  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
negative regulation of tumor necrosis factor production  (IMP)
positive regulation of apoptotic DNA fragmentation  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of cold-induced thermogenesis  (IMP)
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process  (ISO)
positive regulation of DNA-binding transcription factor activity  (ISO)
positive regulation of gene expression  (IMP,ISO)
positive regulation of inclusion body assembly  (ISO)
positive regulation of macrophage differentiation  (ISO)
positive regulation of microtubule binding  (ISO)
positive regulation of mitotic cell cycle  (ISO)
positive regulation of mRNA polyadenylation  (ISO)
positive regulation of multicellular organism growth  (IMP)
positive regulation of transcription by RNA polymerase II  (ISO)
positive regulation of transcription from RNA polymerase II promoter in response to heat stress  (ISO)
positive regulation of tyrosine phosphorylation of STAT protein  (ISO)
protein phosphorylation  (IDA)
regulation of cellular response to heat  (ISO)
regulation of transcription by RNA polymerase II  (IBA)
regulation of transcription, DNA-templated  (IEA)
response to activity  (ISO)
response to amino acid  (ISO)
response to estradiol  (ISO)
response to heat  (IMP,ISO)
response to hypobaric hypoxia  (ISO)
response to lipopolysaccharide  (IMP)
response to nutrient  (ISO)
response to organic cyclic compound  (ISO)
response to organonitrogen compound  (ISO)
response to peptide  (ISO)
response to psychosocial stress  (ISO)
response to testosterone  (ISO)
spermatogenesis  (IGI)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal astrocyte morphology  (IAGP)
abnormal axon morphology  (IAGP)
abnormal brain morphology  (IAGP)
abnormal brain ventricle morphology  (IAGP)
abnormal brain white matter morphology  (IAGP)
abnormal cell death  (IAGP)
abnormal chromosomal synapsis  (IAGP)
abnormal corpus callosum morphology  (IAGP)
abnormal digestive system morphology  (IAGP)
abnormal dorsal root ganglion morphology  (IAGP)
abnormal embryo size  (IEA)
abnormal extraembryonic tissue morphology  (IAGP)
abnormal female meiosis  (IAGP)
abnormal fertility/fecundity  (IAGP)
abnormal gametogenesis  (IAGP)
abnormal meiotic spindle assembly checkpoint  (IAGP)
abnormal placenta labyrinth morphology  (IAGP)
abnormal putamen morphology  (IAGP)
abnormal sciatic nerve morphology  (IAGP)
abnormal seminiferous tubule morphology  (IAGP)
abnormal skin morphology  (IAGP)
abnormal sleep behavior  (IEA)
abnormal spermatogenesis  (IAGP)
abnormal stomach morphology  (IAGP)
abnormal striatum morphology  (IAGP)
abnormal synaptonemal complex  (IAGP)
abnormal testis morphology  (IAGP)
arrest of male meiosis  (IAGP)
azoospermia  (IAGP)
cataract  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased sensitivity to induced cell death  (IAGP)
decreased spongiotrophoblast size  (IAGP)
decreased testis weight  (IAGP)
dilated lateral ventricles  (IAGP)
dilated third ventricle  (IAGP)
failure of zygotic cell division  (IAGP)
female infertility  (IAGP)
increased interleukin-1 beta secretion  (IAGP)
increased mean corpuscular hemoglobin concentration  (IEA)
increased susceptibility to bacterial infection  (IAGP)
increased tumor necrosis factor secretion  (IAGP)
male infertility  (IAGP)
multinucleated giant male germ cells  (IAGP)
neurodegeneration  (IAGP)
postnatal growth retardation  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
ruptured lens capsule  (IAGP)
small testis  (IAGP)
References

References - curated
1. Chiang MC, etal., Hum Mol Genet. 2009 Aug 15;18(16):2929-42. doi: 10.1093/hmg/ddp230. Epub 2009 May 14.
2. Cohen J, etal., J Endourol. 2013 Mar;27(3):343-8. doi: 10.1089/end.2012.0194. Epub 2013 Feb 25.
3. Fan-xin M, etal., Exp Physiol. 2012 Jun;97(6):730-40. doi: 10.1113/expphysiol.2011.064204. Epub 2012 Mar 16.
4. Fujimoto M, etal., J Biol Chem. 2005 Oct 14;280(41):34908-16. Epub 2005 Jul 28.
5. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
6. Jiang YQ, etal., Brain Res. 2013 Jun 26;1519:105-11. doi: 10.1016/j.brainres.2013.04.059. Epub 2013 May 9.
7. Kaija H, etal., PLoS One. 2015 May 21;10(5):e0127854. doi: 10.1371/journal.pone.0127854. eCollection 2015.
8. Kim KS, etal., Resuscitation. 2013 Sep;84(9):1285-90. doi: 10.1016/j.resuscitation.2013.03.019. Epub 2013 Mar 22.
9. Lam KK, etal., Eur J Pharmacol. 2013 Jan 15;699(1-3):67-73. doi: 10.1016/j.ejphar.2012.11.044. Epub 2012 Dec 5.
10. Lawler JM, etal., Med Sci Sports Exerc. 2012 Apr;44(4):600-9. doi: 10.1249/MSS.0b013e31823ab37a.
11. Li W, etal., Int Immunopharmacol. 2013 Jun;16(2):248-53. doi: 10.1016/j.intimp.2013.02.022. Epub 2013 Mar 14.
12. Liu F, etal., Mol Reprod Dev. 2011 Apr;78(4):283-91. doi: 10.1002/mrd.21304. Epub 2011 Apr 8.
13. Ma H, etal., J Mol Cell Cardiol. 2012 Jun;52(6):1282-90. doi: 10.1016/j.yjmcc.2012.02.011. Epub 2012 Mar 6.
14. Maheshwari M, etal., Hum Mol Genet. 2014 May 15;23(10):2737-51. doi: 10.1093/hmg/ddt667. Epub 2013 Dec 30.
15. Marunouchi T, etal., J Pharmacol Sci. 2013;123(4):336-46. Epub 2013 Nov 27.
16. Melhem H, etal., Gut. 2015 Jan 20. pii: gutjnl-2014-307030. doi: 10.1136/gutjnl-2014-307030.
17. MGD data from the GO Consortium
18. MGD IEA
19. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
20. RGD automated import pipeline
21. RGD automated import pipeline for gene-chemical interactions
22. Sun X, etal., Neurobiol Dis. 2015 Jun 9;82:123-131. doi: 10.1016/j.nbd.2015.06.001.
23. Syam AF, etal., Acta Med Indones. 2011 Oct;43(4):243-8.
24. Thakur P and Nehru B, Neurochem Int. 2014 Sep;75:1-10. doi: 10.1016/j.neuint.2014.05.002. Epub 2014 May 19.
25. Thakur P and Nehru B, Neuropharmacology. 2014 Apr;79:190-200. doi: 10.1016/j.neuropharm.2013.11.016. Epub 2013 Dec 1.
26. Wang X, etal., J Neurosci. 2014 May 21;34(21):7253-65. doi: 10.1523/JNEUROSCI.4936-13.2014.
27. Wang YL, etal., J Ethnopharmacol. 2015 Mar 13;162:168-75. doi: 10.1016/j.jep.2014.12.062. Epub 2015 Jan 5.
28. Xu T, etal., Biochem Biophys Res Commun. 2015 May 8;460(3):622-7. doi: 10.1016/j.bbrc.2015.03.079. Epub 2015 Mar 21.
29. Zhao R, etal., J Leukoc Biol. 2014 Jun;95(6):941-9. doi: 10.1189/jlb.0513262. Epub 2014 Feb 4.
Additional References at PubMed
PMID:1717345   PMID:7598726   PMID:7748806   PMID:8999855   PMID:9516453   PMID:9829985   PMID:10349636   PMID:10438878   PMID:10512203   PMID:10545106   PMID:10747023   PMID:11032181  
PMID:11042159   PMID:11048707   PMID:11076861   PMID:11217851   PMID:11344080   PMID:11812828   PMID:12112007   PMID:12356732   PMID:12372640   PMID:12477932   PMID:12490036   PMID:12600944  
PMID:12778494   PMID:12843283   PMID:12897157   PMID:12954729   PMID:12967986   PMID:14532117   PMID:14554099   PMID:14670820   PMID:14766729   PMID:14994269   PMID:15183515   PMID:15220113  
PMID:15226319   PMID:15327774   PMID:15364926   PMID:15483628   PMID:15489334   PMID:15528326   PMID:15661742   PMID:15706094   PMID:15721992   PMID:15782199   PMID:15840001   PMID:15952177  
PMID:16038788   PMID:16081837   PMID:16103204   PMID:16141072   PMID:16141073   PMID:16151457   PMID:16306048   PMID:16413386   PMID:16554823   PMID:16569588   PMID:16624816   PMID:16855393  
PMID:17024176   PMID:17095722   PMID:17189318   PMID:17310987   PMID:17397396   PMID:17427954   PMID:17470815   PMID:17556362   PMID:17652588   PMID:17688194   PMID:17766920   PMID:17785525  
PMID:17873025   PMID:17889646   PMID:17965413   PMID:18056375   PMID:18059335   PMID:18245447   PMID:18263706   PMID:18287559   PMID:18434628   PMID:18485534   PMID:18512096   PMID:18601956  
PMID:18689673   PMID:18703420   PMID:18755693   PMID:18757733   PMID:19158073   PMID:19337383   PMID:19439408   PMID:19633360   PMID:19793920   PMID:19846753   PMID:20018623   PMID:20045681  
PMID:20059953   PMID:20363884   PMID:20412781   PMID:20498630   PMID:20802198   PMID:20834230   PMID:20926391   PMID:20956571   PMID:21044072   PMID:21053113   PMID:21114495   PMID:21162300  
PMID:21205885   PMID:21232033   PMID:21266308   PMID:21267068   PMID:21455770   PMID:21471357   PMID:21572029   PMID:21677750   PMID:21690297   PMID:21723507   PMID:21775628   PMID:21785217  
PMID:21813737   PMID:21816209   PMID:21817109   PMID:21873635   PMID:21915348   PMID:21932106   PMID:22042134   PMID:22042860   PMID:22083493   PMID:22215620   PMID:22367781   PMID:22379191  
PMID:22526392   PMID:22549481   PMID:22615365   PMID:22655083   PMID:22753951   PMID:22847003   PMID:22945628   PMID:22962066   PMID:23055521   PMID:23063459   PMID:23192351   PMID:23225230  
PMID:23264262   PMID:23360996   PMID:23418516   PMID:23519122   PMID:23810294   PMID:23829269   PMID:23834426   PMID:24043900   PMID:24130164   PMID:24167582   PMID:24194600   PMID:24303143  
PMID:24421309   PMID:24504023   PMID:24599545   PMID:24670652   PMID:24692538   PMID:24726381   PMID:24763051   PMID:24831003   PMID:24855652   PMID:24952961   PMID:25167838   PMID:25298398  
PMID:25312646   PMID:25425574   PMID:25435429   PMID:25437552   PMID:25450459   PMID:25601714   PMID:25720964   PMID:25724679   PMID:25871979   PMID:25963659   PMID:26108999   PMID:26122846  
PMID:26239834   PMID:26251235   PMID:26320184   PMID:26344102   PMID:26347147   PMID:26352782   PMID:26496610   PMID:26513256   PMID:26597576   PMID:26634350   PMID:26890141   PMID:26936937  
PMID:26994698   PMID:27043084   PMID:27084024   PMID:27131506   PMID:27173427   PMID:27317670   PMID:27320198   PMID:27518433   PMID:27568093   PMID:27626380   PMID:27643574   PMID:27732059  
PMID:28091697   PMID:28183717   PMID:28462912   PMID:28575284   PMID:28678786   PMID:28724966   PMID:28733114   PMID:28970536   PMID:29233969   PMID:29405096   PMID:29626503   PMID:29678661  
PMID:29688375   PMID:29715263   PMID:29799521   PMID:29941492   PMID:29992755   PMID:30316516   PMID:30772489   PMID:30833408   PMID:30929917   PMID:31330130   PMID:31561952   PMID:31627188  
PMID:31744878   PMID:31930683   PMID:31996779   PMID:32141563   PMID:32184357   PMID:32203497   PMID:32302062   PMID:32490574   PMID:32626739   PMID:33182370   PMID:33208463   PMID:33288768  
PMID:33381262   PMID:33639210  


Genomics

Comparative Map Data
Hsf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,361,562 - 76,385,355 (+)NCBIGRCm39mm39
GRCm39 Ensembl1576,361,622 - 76,386,113 (+)Ensembl
GRCm381576,477,362 - 76,501,155 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,477,422 - 76,501,913 (+)EnsemblGRCm38mm10GRCm38
MGSCv371576,307,875 - 76,331,402 (+)NCBIGRCm37mm9NCBIm37
MGSCv361576,304,700 - 76,328,227 (+)NCBImm8
Celera1577,977,956 - 78,001,512 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1535.95NCBI
HSF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8144,291,591 - 144,314,720 (+)EnsemblGRCh38hg38GRCh38
GRCh388144,291,603 - 144,314,720 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh378145,515,286 - 145,538,383 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,486,078 - 145,509,193 (+)NCBINCBI36hg18NCBI36
Build 348145,486,090 - 145,509,187NCBI
Celera8141,707,360 - 141,713,153 (+)NCBI
Cytogenetic Map8q24.3NCBI
HuRef8140,629,839 - 140,652,904 (+)NCBIHuRef
CHM1_18145,553,452 - 145,576,661 (+)NCBICHM1_1
Hsf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27108,196,040 - 108,223,011 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl7108,196,056 - 108,223,011 (+)Ensembl
Rnor_6.07117,538,523 - 117,565,478 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,538,523 - 117,565,478 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,526,154 - 117,553,109 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,524,211 - 114,551,166 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17114,580,681 - 114,585,056 (+)NCBI
Celera7104,547,683 - 104,574,508 (+)NCBICelera
Cytogenetic Map7q34NCBI
Hsf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554542,907,265 - 2,932,351 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554542,907,265 - 2,932,352 (+)NCBIChiLan1.0ChiLan1.0
HSF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18144,062,137 - 144,067,725 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8144,062,137 - 144,067,866 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v08141,055,310 - 141,078,360 (+)NCBIMhudiblu_PPA_v0panPan3
HSF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,724,741 - 37,745,259 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,724,759 - 37,745,252 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,688,336 - 37,708,839 (+)NCBI
ROS_Cfam_1.01338,200,982 - 38,221,480 (+)NCBI
UMICH_Zoey_3.11337,893,218 - 37,913,632 (+)NCBI
UNSW_CanFamBas_1.01338,001,763 - 38,022,270 (+)NCBI
UU_Cfam_GSD_1.01338,478,086 - 38,498,596 (+)NCBI
Hsf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303501,635 - 524,700 (-)NCBI
SpeTri2.0NW_0049364707,927,734 - 7,950,805 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4461,559 - 486,473 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14463,531 - 486,483 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24610,323 - 633,482 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HSF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,503,836 - 138,529,562 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,503,831 - 138,529,165 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660391,334,097 - 1,360,855 (-)NCBIVero_WHO_p1.0
Hsf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473512,536,818 - 12,562,643 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
AA960185  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381576,500,691 - 76,500,804UniSTSGRCm38
MGSCv371576,331,121 - 76,331,234UniSTSGRCm37
Celera1578,001,231 - 78,001,344UniSTS
Cytogenetic Map15D3UniSTS
cM Map1543.0UniSTS
Whitehead/MRC_RH15647.77UniSTS
UniSTS:237330  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381576,475,774 - 76,475,989UniSTSGRCm38
MGSCv371576,306,204 - 76,306,419UniSTSGRCm37
Celera1577,976,285 - 77,976,500UniSTS
Cytogenetic Map15D3UniSTS
cM Map1543.0UniSTS
cM Map1543.0UniSTS
Hsf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15D3UniSTS
cM Map1535.95UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined346021278717086Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined346021278717086Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined346021278717086Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15346021278717086Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15346021278717086Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15610000076500000Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15610000078800000Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15610000086800000Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156100000100900000Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15690000084700000Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927293679590561Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402117102988123Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800000102100000Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578270103517472Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800000086800000Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154230000095600000Mouse
1300644Fob3_mF-line obesity QTL 3 (mouse)11.3Not determined154414443889377036Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154468146478681588Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154498729278987432Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154651779780517996Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154651779780517996Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154743448581434630Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154753774781537842Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154850000098500000Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548500000101800000Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154859351382593647Mouse
1301779Dpml_mdopamine loss (mouse)Not determined155114129876910293Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155128885985288984Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155154651285546662Mouse
10412067Pain2_mpain 2 (mouse)Not determined155177349085773777Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155181398385822600Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155193466685934802Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155370000089700000Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155491728088917280Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556323312103517472Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155690000087800000Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155724515691245304Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155724515691245304Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156170000095700000Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156327970297279794Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156351779781202235Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564434485103517472Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156492762598927745Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156545237799456827Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156564117599641298Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567386497101386646Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570461452104043685Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570465070104043685Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570465070104043685Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572498466104043685Mouse
1300844Emo2_memotionality 2 (mouse)Not determined157250061076910293Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157250061080014977Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573545941104043685Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157422869182789955Mouse
13442492Mecth2_mmechanosensation threshold 2 (mouse)157479100079503000Mouse
1301472Pain1_mpain 1 (mouse)Not determined157544899790928982Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:360
Count of miRNA genes:271
Interacting mature miRNAs:298
Transcripts:ENSMUST00000072838
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001331152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001331153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001331154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001331214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_138588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_138589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC157566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF059275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF061503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG694608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ445304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU925102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB245398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK622418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM043052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM043053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM043054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM043055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X61753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z49206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000072838   ⟹   ENSMUSP00000072617
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,361,645 - 76,385,172 (+)Ensembl
GRCm38.p6 Ensembl1576,477,445 - 76,500,972 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226238   ⟹   ENSMUSP00000154386
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,382,436 - 76,384,718 (+)Ensembl
GRCm38.p6 Ensembl1576,498,236 - 76,500,518 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226860   ⟹   ENSMUSP00000154526
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,361,655 - 76,385,355 (+)Ensembl
GRCm38.p6 Ensembl1576,477,455 - 76,501,155 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226872   ⟹   ENSMUSP00000154328
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,361,635 - 76,385,172 (+)Ensembl
GRCm38.p6 Ensembl1576,477,435 - 76,500,972 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227478   ⟹   ENSMUSP00000154602
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,361,645 - 76,385,172 (+)Ensembl
GRCm38.p6 Ensembl1576,477,445 - 76,500,972 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227921
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,361,886 - 76,382,094 (+)Ensembl
GRCm38.p6 Ensembl1576,477,686 - 76,497,894 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228371   ⟹   ENSMUSP00000154638
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,361,645 - 76,385,172 (+)Ensembl
GRCm38.p6 Ensembl1576,477,445 - 76,500,972 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228388
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,361,649 - 76,364,781 (+)Ensembl
GRCm38.p6 Ensembl1576,477,449 - 76,480,581 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228688   ⟹   ENSMUSP00000154799
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,384,166 - 76,384,890 (+)Ensembl
GRCm38.p6 Ensembl1576,499,966 - 76,500,690 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228720
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,382,209 - 76,382,768 (+)Ensembl
GRCm38.p6 Ensembl1576,498,009 - 76,498,568 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228757   ⟹   ENSMUSP00000154356
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,361,622 - 76,386,113 (+)Ensembl
GRCm38.p6 Ensembl1576,477,422 - 76,501,913 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228781
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,383,672 - 76,385,178 (+)Ensembl
GRCm38.p6 Ensembl1576,499,472 - 76,500,978 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228868   ⟹   ENSMUSP00000154346
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,361,622 - 76,385,122 (+)Ensembl
GRCm38.p6 Ensembl1576,477,422 - 76,500,922 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229363   ⟹   ENSMUSP00000155104
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,361,774 - 76,385,168 (+)Ensembl
GRCm38.p6 Ensembl1576,477,574 - 76,500,968 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230069
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,361,661 - 76,382,933 (+)Ensembl
GRCm38.p6 Ensembl1576,477,461 - 76,498,733 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230505
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,383,847 - 76,385,170 (+)Ensembl
GRCm38.p6 Ensembl1576,499,647 - 76,500,970 (+)Ensembl
RefSeq Acc Id: NM_001331152   ⟹   NP_001318081
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,361,562 - 76,385,355 (+)NCBI
GRCm381576,477,362 - 76,501,155 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001331153   ⟹   NP_001318082
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,361,562 - 76,385,355 (+)NCBI
GRCm381576,477,362 - 76,501,155 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001331154   ⟹   NP_001318083
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,361,562 - 76,385,355 (+)NCBI
GRCm381576,477,362 - 76,501,155 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001331214   ⟹   NP_001318143
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,361,562 - 76,385,355 (+)NCBI
GRCm381576,477,362 - 76,501,155 (+)NCBI
Sequence:
RefSeq Acc Id: NM_008296   ⟹   NP_032322
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,361,562 - 76,385,355 (+)NCBI
GRCm381576,477,362 - 76,501,155 (+)NCBI
MGSCv371576,307,875 - 76,331,402 (+)RGD
Celera1577,977,956 - 78,001,512 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_138588
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,361,562 - 76,385,355 (+)NCBI
GRCm381576,477,362 - 76,501,155 (+)NCBI
Sequence:
RefSeq Acc Id: NR_138589
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,361,562 - 76,385,355 (+)NCBI
GRCm381576,477,362 - 76,501,155 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006520474   ⟹   XP_006520537
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,361,828 - 76,385,176 (+)NCBI
GRCm381576,477,628 - 76,500,972 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006520475   ⟹   XP_006520538
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,361,828 - 76,385,176 (+)NCBI
GRCm381576,477,628 - 76,500,972 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006520476   ⟹   XP_006520539
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,361,655 - 76,385,178 (+)NCBI
GRCm381576,477,455 - 76,500,976 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248342   ⟹   XP_030104202
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,361,655 - 76,385,178 (+)NCBI
GRCm381576,477,455 - 76,500,976 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159165   ⟹   XP_036015058
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,361,649 - 76,385,176 (+)NCBI
RefSeq Acc Id: XM_036159166   ⟹   XP_036015059
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,361,582 - 76,385,178 (+)NCBI
RefSeq Acc Id: XM_036159167   ⟹   XP_036015060
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,361,649 - 76,385,178 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001318081 (Get FASTA)   NCBI Sequence Viewer  
  NP_001318082 (Get FASTA)   NCBI Sequence Viewer  
  NP_001318083 (Get FASTA)   NCBI Sequence Viewer  
  NP_001318143 (Get FASTA)   NCBI Sequence Viewer  
  NP_032322 (Get FASTA)   NCBI Sequence Viewer  
  XP_006520537 (Get FASTA)   NCBI Sequence Viewer  
  XP_006520538 (Get FASTA)   NCBI Sequence Viewer  
  XP_006520539 (Get FASTA)   NCBI Sequence Viewer  
  XP_030104202 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015058 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015059 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015060 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC80425 (Get FASTA)   NCBI Sequence Viewer  
  AAC80430 (Get FASTA)   NCBI Sequence Viewer  
  AAH13716 (Get FASTA)   NCBI Sequence Viewer  
  AAH94064 (Get FASTA)   NCBI Sequence Viewer  
  AIE57804 (Get FASTA)   NCBI Sequence Viewer  
  AIE57805 (Get FASTA)   NCBI Sequence Viewer  
  AIE57806 (Get FASTA)   NCBI Sequence Viewer  
  AIE57807 (Get FASTA)   NCBI Sequence Viewer  
  CAA43892 (Get FASTA)   NCBI Sequence Viewer  
  CAA89067 (Get FASTA)   NCBI Sequence Viewer  
  EDL29569 (Get FASTA)   NCBI Sequence Viewer  
  EDL29570 (Get FASTA)   NCBI Sequence Viewer  
  EDL29571 (Get FASTA)   NCBI Sequence Viewer  
  EDL29572 (Get FASTA)   NCBI Sequence Viewer  
  EDL29573 (Get FASTA)   NCBI Sequence Viewer  
  EDL29574 (Get FASTA)   NCBI Sequence Viewer  
  P38532 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_032322   ⟸   NM_008296
- Peptide Label: isoform beta
- UniProtKB: P38532 (UniProtKB/Swiss-Prot),   A0A075F882 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006520537   ⟸   XM_006520474
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006520539   ⟸   XM_006520476
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006520538   ⟸   XM_006520475
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001318081   ⟸   NM_001331152
- Peptide Label: isoform gammaalpha
- UniProtKB: A0A075F6C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001318082   ⟸   NM_001331153
- Peptide Label: isoform gammabeta
- UniProtKB: A0A075F5C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001318143   ⟸   NM_001331214
- Peptide Label: isoform 5
- UniProtKB: Q52L52 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001318083   ⟸   NM_001331154
- Peptide Label: isoform alpha
- UniProtKB: P38532 (UniProtKB/Swiss-Prot),   A0A075F891 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030104202   ⟸   XM_030248342
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000072617   ⟸   ENSMUST00000072838
RefSeq Acc Id: ENSMUSP00000154638   ⟸   ENSMUST00000228371
RefSeq Acc Id: ENSMUSP00000154602   ⟸   ENSMUST00000227478
RefSeq Acc Id: ENSMUSP00000154386   ⟸   ENSMUST00000226238
RefSeq Acc Id: ENSMUSP00000154328   ⟸   ENSMUST00000226872
RefSeq Acc Id: ENSMUSP00000154526   ⟸   ENSMUST00000226860
RefSeq Acc Id: ENSMUSP00000155104   ⟸   ENSMUST00000229363
RefSeq Acc Id: ENSMUSP00000154346   ⟸   ENSMUST00000228868
RefSeq Acc Id: ENSMUSP00000154356   ⟸   ENSMUST00000228757
RefSeq Acc Id: ENSMUSP00000154799   ⟸   ENSMUST00000228688
RefSeq Acc Id: XP_036015059   ⟸   XM_036159166
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036015060   ⟸   XM_036159167
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036015058   ⟸   XM_036159165
- Peptide Label: isoform X2
Protein Domains
HSF_DOMAIN   Vert_HS_TF

Promoters
RGD ID:6825822
Promoter ID:MM_KWN:18875
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000023215,   ENSMUST00000100506,   NM_008296,   NM_013481,   UC007WKI.1,   UC007WKJ.1,   UC007WKK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361576,307,641 - 76,308,532 (-)MPROMDB
RGD ID:6826107
Promoter ID:MM_KWN:18876
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Brain,   Kidney,   Liver,   Spleen
Transcripts:UC007WKL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361576,327,686 - 76,328,712 (+)MPROMDB
RGD ID:6847197
Promoter ID:MM_ACW:18485
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4
Transcripts:HSF1.JSEP07,   HSF1.KSEP07,   HSF1.LSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361576,329,456 - 76,329,956 (+)MPROMDB
RGD ID:8684122
Promoter ID:EPDNEW_M20091
Type:initiation region
Name:Hsf1_1
Description:Mus musculus heat shock factor 1 , transcript variant 6, non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381576,477,438 - 76,477,498EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96238 AgrOrtholog
Ensembl Genes ENSMUSG00000022556 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000072617 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000154328 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000154346 UniProtKB/TrEMBL
  ENSMUSP00000154356 UniProtKB/TrEMBL
  ENSMUSP00000154386 UniProtKB/TrEMBL
  ENSMUSP00000154526 UniProtKB/TrEMBL
  ENSMUSP00000154602 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000154638 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000154799 UniProtKB/TrEMBL
  ENSMUSP00000155104 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000072838 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000226238 UniProtKB/TrEMBL
  ENSMUST00000226860 UniProtKB/TrEMBL
  ENSMUST00000226872 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000227478 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000228371 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000228688 UniProtKB/TrEMBL
  ENSMUST00000228757 UniProtKB/TrEMBL
  ENSMUST00000228868 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000229363 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HSF_DNA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSF_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vert_HSTF_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15499 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:96238 ENTREZGENE
NCBI Gene 15499 ENTREZGENE
PANTHER PTHR10015 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HSF_DNA-bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vert_HS_TF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hsf1 PhenoGen
PRINTS HSFDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HSF_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HSF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A075F5C6 ENTREZGENE, UniProtKB/TrEMBL
  A0A075F6C2 ENTREZGENE, UniProtKB/TrEMBL
  A0A075F882 ENTREZGENE, UniProtKB/TrEMBL
  A0A075F891 ENTREZGENE, UniProtKB/TrEMBL
  A0A2I3BQV9_MOUSE UniProtKB/TrEMBL
  A0A2I3BQX3_MOUSE UniProtKB/TrEMBL
  A0A2I3BR06_MOUSE UniProtKB/TrEMBL
  A0A2I3BRL6_MOUSE UniProtKB/TrEMBL
  A0A2I3BS48_MOUSE UniProtKB/TrEMBL
  A0A2R8W6L8_MOUSE UniProtKB/TrEMBL
  HSF1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q52L52 ENTREZGENE, UniProtKB/TrEMBL
  Q61695_MOUSE UniProtKB/TrEMBL
  Q792P1_MOUSE UniProtKB/TrEMBL
UniProt Secondary O70462 UniProtKB/Swiss-Prot