VCAM1 (vascular cell adhesion molecule 1) - Rat Genome Database

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Gene: VCAM1 (vascular cell adhesion molecule 1) Homo sapiens
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Symbol: VCAM1
Name: vascular cell adhesion molecule 1
RGD ID: 730988
HGNC Page HGNC
Description: Enables integrin binding activity and primary amine oxidase activity. Involved in several processes, including calcium-mediated signaling using intracellular calcium source; cell-cell adhesion in response to extracellular stimulus; and cellular response to amyloid-beta. Located in several cellular components, including early endosome; external side of plasma membrane; and podosome. Part of alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex. Biomarker of several diseases, including artery disease (multiple); diabetes mellitus (multiple); essential thrombocythemia; glomerulonephritis (multiple); and interstitial cystitis.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: CD106; CD106 antigen; DKFZp779G2333; INCAM-100; MGC99561; vascular cell adhesion protein 1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1100,719,742 - 100,739,045 (+)EnsemblGRCh38hg38GRCh38
GRCh381100,719,742 - 100,739,045 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371101,185,298 - 101,204,601 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361100,957,885 - 100,977,189 (+)NCBINCBI36hg18NCBI36
Build 341100,897,317 - 100,916,620NCBI
Celera199,446,448 - 99,465,752 (+)NCBI
Cytogenetic Map1p21.2NCBI
HuRef199,309,886 - 99,329,291 (+)NCBIHuRef
CHM1_11101,301,307 - 101,320,707 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Albuminuria  (IEP)
Anaphylaxis  (ISO)
anemia  (IEP)
anti-basement membrane glomerulonephritis  (ISO)
aortic disease  (ISO)
arteriosclerosis  (EXP)
atherosclerosis  (EXP)
cardiovascular system disease  (EXP)
carotid artery disease  (IEP)
carotid stenosis  (ISO)
cholestasis  (EXP)
chronic kidney disease  (IEP,ISO)
colitis  (ISO)
dermatitis  (EXP)
Diabetic Nephropathies  (IEP,ISO)
diabetic neuropathy  (IEP)
diabetic retinopathy  (IEP)
Diaphragmatic Hernia  (EXP)
Endotoxemia  (ISO)
essential thrombocythemia  (IEP)
Experimental Autoimmune Encephalomyelitis  (ISO)
Experimental Diabetes Mellitus  (ISO)
familial hyperlipidemia  (ISO)
Gastrointestinal Diseases  (IAGP)
glomerulonephritis  (IEP)
hepatocellular carcinoma  (EXP)
Hypercholesterolemia  (EXP)
hypertension  (EXP,IEP,ISO)
Insulin Resistance  (IEP)
interstitial cystitis  (IEP)
intrahepatic cholestasis of pregnancy  (EXP)
Kidney Reperfusion Injury  (ISO)
Left Ventricular Hypertrophy  (IEP)
lupus nephritis  (IEP)
Lymphocytic Myocarditis  (IEP)
Metabolic Syndrome  (ISO)
multiple sclerosis  (EXP)
Myocardial Ischemia  (EXP)
Myocardial Reperfusion Injury  (ISO)
Neoplasm Metastasis  (IEP)
obesity  (ISO)
pancreatic cancer  (IEP)
pancreatitis  (IEP)
periodontitis  (ISO)
Pregnancy in Diabetics  (IEP)
Primary Graft Dysfunction  (EXP)
pulmonary embolism  (ISO)
pulmonary hypertension  (ISO)
Reperfusion Injury  (ISO)
rheumatic myocarditis  (IEP)
sickle cell anemia  (EXP)
Stroke  (IAGP)
systemic lupus erythematosus  (IEP)
thromboangiitis obliterans  (IEP,ISO)
type 1 diabetes mellitus  (IEP)
type 2 diabetes mellitus  (IEP)
ulcerative colitis  (EXP)
uremia  (EXP)
urticaria  (EXP)
Venous Thrombosis  (ISO)
Vitamin A Deficiency  (ISO)
Vitamin D Deficiency  (IEP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (EXP)
(2,4,5-trichlorophenoxy)acetic acid  (ISO)
(20S)-ginsenoside Rh1  (EXP)
(25R)-cholest-5-ene-3beta,26-diol  (EXP)
(4Z,7Z,10Z,13Z,15E,19Z)-17-hydroxydocosahexaenoic acid  (ISO)
(R)-linalyl acetate  (ISO)
(R)-mevalonic acid  (EXP)
(R,R,R)-alpha-tocopherol  (EXP)
(S)-colchicine  (EXP,ISO)
(S)-nicotine  (EXP,ISO)
1,2,3,4,6-pentakis-O-galloyl-beta-D-glucose  (EXP)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
1-naphthyl isothiocyanate  (EXP,ISO)
11-deoxycorticosterone  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2-acetamidofluorene  (ISO)
2-butoxyethanol  (ISO)
2-methylcholine  (EXP)
22-Hydroxycholesterol  (EXP)
25-hydroxycholesterol  (EXP)
26-hydroxycholesterol  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP,ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
7-ketocholesterol  (EXP)
8-bromo-3',5'-cyclic GMP  (EXP)
acetamide  (ISO)
acetylsalicylic acid  (EXP,ISO)
acteoside  (EXP)
actinomycin D  (EXP,ISO)
aflatoxin B1  (EXP)
aldehydo-D-glucose  (EXP,ISO)
aldrin  (ISO)
all-trans-retinoic acid  (EXP,ISO)
allyl isothiocyanate  (ISO)
alpha-linolenic acid  (ISO)
aluminium oxide  (EXP)
amiodarone  (EXP)
amlodipine  (ISO)
ammonium chloride  (ISO)
anagliptin  (EXP)
andrographolide  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (EXP,ISO)
antirheumatic drug  (EXP)
apigenin  (EXP)
apocynin  (EXP)
aristolochic acid  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (EXP)
arsenous acid  (EXP,ISO)
aspalathin  (EXP)
astemizole  (EXP)
atorvastatin calcium  (EXP,ISO)
atropine  (ISO)
bacitracin  (ISO)
beclomethasone  (EXP)
benazepril  (ISO)
benzene  (EXP)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bezafibrate  (EXP,ISO)
bicalutamide  (EXP)
biochanin A  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
budesonide  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
calmidazolium  (EXP)
candesartan  (ISO)
capsaicin  (EXP,ISO)
carbon monoxide  (EXP,ISO)
carbon nanotube  (EXP,ISO)
carrageenan  (ISO)
cefaloridine  (ISO)
celastrol  (EXP)
chenodeoxycholic acid  (EXP,ISO)
chlordecone  (ISO)
chloroprene  (ISO)
cholesterol  (ISO)
choline  (ISO)
chrysene  (ISO)
chrysin  (EXP)
ciguatoxin CTX1B  (ISO)
cilostazol  (EXP)
cisplatin  (ISO)
clobetasol  (ISO)
clofibrate  (ISO)
clofibric acid  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (EXP,ISO)
cortisol  (EXP)
crocidolite asbestos  (EXP,ISO)
Cuprizon  (ISO)
curcumin  (EXP,ISO)
Curcumol  (EXP)
cycloheximide  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
cytarabine  (EXP)
cytochalasin D  (EXP)
D-glucose  (EXP,ISO)
D-mannitol  (EXP)
dabrafenib  (EXP)
daidzein  (EXP)
dantrolene  (ISO)
daunorubicin  (ISO)
decabromodiphenyl ether  (EXP,ISO)
delta-tocotrienol  (ISO)
deoxycholic acid  (EXP,ISO)
Deoxycorticosterone acetate  (ISO)
desferrioxamine B  (EXP,ISO)
desflurane  (EXP)
desogestrel  (EXP)
dexamethasone  (EXP,ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (EXP,ISO)
dibenziodolium  (EXP)
diclofenac  (ISO)
diethylstilbestrol  (ISO)
digitoxin  (EXP)
dioxygen  (EXP,ISO)
dipyridamole  (ISO)
disodium selenite  (EXP)
diuron  (ISO)
divanadium pentaoxide  (EXP)
dorsomorphin  (EXP)
doxorubicin  (EXP,ISO)
dutasteride  (EXP)
edaravone  (ISO)
enalapril  (ISO)
endosulfan  (ISO)
entinostat  (EXP)
erythromycin A  (EXP)
esculetin  (ISO)
estriol  (EXP)
estrone  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (EXP)
etoposide  (EXP)
felodipine  (ISO)
fenofibrate  (EXP,ISO)
filipin III  (EXP)
fluoranthene  (ISO)
fluticasone  (EXP)
fluvoxamine  (EXP,ISO)
folic acid  (ISO)
formaldehyde  (EXP)
Fraxinellone  (ISO)
fructose  (EXP,ISO)
fulvestrant  (EXP,ISO)
fumaric acid  (ISO)
furan  (ISO)
furosemide  (ISO)
gallic acid  (ISO)
Garcinol  (EXP)
gemcitabine  (EXP)
gemfibrozil  (ISO)
genistein  (EXP,ISO)
gentamycin  (ISO)
geraniol  (EXP,ISO)
ginkgolide B  (EXP)
ginsenoside C-K  (EXP)
glafenine  (ISO)
glucose  (EXP,ISO)
glutathione  (EXP)
Goe 6976  (EXP)
griseofulvin  (EXP,ISO)
GW 3965  (EXP)
GW 4064  (EXP)
GW 501516  (EXP)
halothane  (ISO)
helenalin  (ISO)
hesperidin  (EXP)
hexachlorobenzene  (ISO)
hexadecanoic acid  (EXP)
homocysteine  (EXP)
hydrogen peroxide  (EXP)
hydroxamic acid  (ISO)
hydroxysafflor yellow A  (EXP,ISO)
hydroxytyrosol  (EXP)
ibuprofen  (EXP)
indometacin  (EXP,ISO)
indoxyl sulfate  (EXP)
irbesartan  (ISO)
iron atom  (EXP)
iron(0)  (EXP)
isocarbophos  (ISO)
isoprenaline  (ISO)
jaspamide  (EXP)
kaempferol  (EXP)
kaempferol 3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside  (EXP)
ketamine  (ISO)
ketotifen  (EXP)
L-ascorbic acid  (EXP)
L-methionine  (ISO)
lead(0)  (EXP)
lead(2+)  (EXP)
levofloxacin  (ISO)
levonorgestrel  (EXP)
linalool  (ISO)
linalyl acetate  (ISO)
lipopolysaccharide  (EXP,ISO)
lithium chloride  (ISO)
lithocholic acid  (EXP)
losartan  (ISO)
luteolin  (EXP)
LY294002  (EXP)
lycopene  (EXP)
lysophosphatidylcholine  (EXP)
manganese(II) chloride  (ISO)
mangiferin  (ISO)
manidipine  (ISO)
medroxyprogesterone acetate  (EXP)
melamine  (EXP)
melittin  (ISO)
mercury dibromide  (EXP)
mercury dichloride  (ISO)
metacetamol  (ISO)
methapyrilene  (ISO)
methcathinone  (EXP)
methotrexate  (EXP)
methyl beta-cyclodextrin  (EXP)
methyl methanesulfonate  (EXP)
methylglyoxal  (ISO)
methylmercury chloride  (EXP)
methyltestosterone  (EXP)
Methylthiouracil  (EXP)
mifepristone  (EXP,ISO)
miquelianin  (EXP)
mometasone furoate  (EXP)
monocrotaline  (ISO)
N(gamma)-nitro-L-arginine methyl ester  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-nitrosodiethylamine  (ISO)
N-tosyl-L-phenylalanyl chloromethyl ketone  (EXP)
naproxen  (ISO)
naringin  (EXP)
nebivolol  (EXP)
neocuproine  (EXP)
nevirapine  (ISO)
nickel atom  (EXP,ISO)
nickel dichloride  (EXP)
nicotine  (EXP,ISO)
nicotinic acid  (EXP)
nimesulide  (EXP)
nitrofen  (ISO)
nitrogen dioxide  (EXP)
notoginsenoside R1  (ISO)
NSC 23766  (EXP)
o-anisidine  (EXP)
oleanolic acid  (EXP)
oleuropein  (EXP)
oroxylin A  (ISO)
oxaliplatin  (ISO)
oxytocin  (EXP)
p-chloromercuribenzoic acid  (EXP)
p-cresol  (EXP)
paclitaxel  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
parthenolide  (EXP)
pelargonidin  (EXP)
pentachlorophenol  (ISO)
Pentoxifylline  (ISO)
phenacetin  (ISO)
Phenelzine  (ISO)
phenethyl caffeate  (EXP)
phenobarbital  (ISO)
phenylephrine  (ISO)
phenylhydrazine  (ISO)
phenylmercury acetate  (EXP)
phorbol 13-acetate 12-myristate  (EXP)
pioglitazone  (ISO)
pirinixic acid  (EXP,ISO)
polyphosphates  (EXP)
potassium dichromate  (ISO)
PR-39  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
probucol  (EXP)
procyanidin B2  (ISO)
progesterone  (EXP,ISO)
protoporphyrin  (EXP)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (EXP,ISO)
quercetin 3-O-beta-D-galactopyranoside  (ISO)
quercetin 3-sulfate  (EXP)
Quinupristin-dalfopristin  (EXP)
resolvin D1  (ISO)
resolvin D2  (ISO)
resveratrol  (EXP,ISO)
ricinoleic acid  (EXP)
rimonabant  (EXP,ISO)
rutin  (ISO)
ryanodine  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
sarpogrelate  (EXP)
SB 203580  (EXP,ISO)
SB 431542  (EXP)
serotonin  (EXP)
serpentine asbestos  (EXP,ISO)
sertraline  (EXP)
silicon dioxide  (EXP,ISO)
simvastatin  (EXP,ISO)
sinigrin  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sodium cholate  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
sphingosine 1-phosphate  (EXP)
SR 144528  (EXP)
streptozocin  (ISO)
sulfasalazine  (EXP,ISO)
sulfates  (EXP)
sulforaphane  (ISO)
sulfur dioxide  (ISO)
sulindac  (ISO)
sumatriptan  (ISO)
sunitinib  (EXP)
tacrolimus hydrate  (ISO)
tamoxifen  (ISO)
taurocholic acid  (EXP,ISO)
telmisartan  (ISO)
tert-butyl hydroperoxide  (EXP)
testosterone  (EXP,ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
tetrathiomolybdate(2-)  (EXP,ISO)
thalidomide  (ISO)
thioacetamide  (ISO)
thiram  (EXP)
tibolone  (EXP)
Tiron  (EXP)
titanium dioxide  (EXP,ISO)
toluene 2,4-diisocyanate  (ISO)
topotecan  (ISO)
triamcinolone acetonide  (EXP)
trichloroethene  (ISO)
trichostatin A  (EXP)
triclosan  (EXP)
trimellitic anhydride  (ISO)
tropan-3alpha-yl 3-hydroxy-2-phenylpropanoate  (ISO)
U-73122  (EXP)
valproic acid  (EXP)
vanadium atom  (EXP)
vanadium(0)  (EXP)
vancomycin  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (ISO)
vincristine  (EXP,ISO)
vitamin E  (EXP)
wedelolactone  (EXP)
zileuton  (ISO)
zinc atom  (EXP,ISO)
zinc protoporphyrin  (EXP,ISO)
zinc(0)  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Leukocytosis  (IAGP)
Stroke  (IAGP)
References

References - curated
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4. Bartels ED, etal., Eur J Clin Invest. 2009 Mar;39(3):190-9.
5. Bessa SS, etal., Eur J Intern Med. 2010 Dec;21(6):530-5. doi: 10.1016/j.ejim.2010.09.011. Epub 2010 Oct 20.
6. Bilgir F, etal., Panminerva Med. 2013 Dec;55(4):385-90.
7. Boulbou MS, etal., Acta Diabetol. 2004 Sep;41(3):118-22.
8. Bruno CM, etal., Minerva Med. 2008 Feb;99(1):1-5.
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11. Day RT, etal., Am J Physiol Renal Physiol. 2013 Jan 9.
12. Ekuni D, etal., Lab Invest. 2010 Mar;90(3):348-59. doi: 10.1038/labinvest.2009.141. Epub 2010 Jan 11.
13. Gatica LV, etal., Eur J Nutr. 2012 Feb;51(1):97-106. doi: 10.1007/s00394-011-0198-z. Epub 2011 Apr 22.
14. Graham D, etal., Hypertension. 2007 Oct 15;.
15. Grieve SM, etal., Eur Biophys J. 2013 Jan;42(1):61-70. doi: 10.1007/s00249-012-0857-x. Epub 2012 Sep 28.
16. Hafez M, etal., Pediatr Cardiol. 2013 Mar;34(3):583-90. doi: 10.1007/s00246-012-0501-7. Epub 2012 Sep 18.
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34. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
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38. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
39. RGD automated import pipeline for gene-chemical interactions
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44. Sawada H, etal., Chest. 2007 Oct;132(4):1265-74.
45. Singh S, etal., Arthritis Res Ther. 2012 Jul 13;14(4):R164.
46. Sun L, etal., Chin Med J (Engl). 2008 Nov 20;121(22):2305-11.
47. Tan HW, etal., Acta Pharmacol Sin. 2008 Sep;29(9):1051-9.
48. Taylor JG 6th, etal., Blood 2002 Dec 15;100(13):4303-9. Epub 2002 Aug 15.
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Additional References at PubMed
PMID:1281211   PMID:1377228   PMID:1379595   PMID:1381355   PMID:1699207   PMID:1707234   PMID:1707873   PMID:1713772   PMID:1715583   PMID:1715889   PMID:2688898   PMID:7521694  
PMID:7531291   PMID:7534402   PMID:7539925   PMID:7545397   PMID:7691867   PMID:7884872   PMID:8125298   PMID:8607877   PMID:8825878   PMID:8977311   PMID:9117345   PMID:9184636  
PMID:9269771   PMID:9290466   PMID:9443894   PMID:9603478   PMID:9792375   PMID:9973426   PMID:10209034   PMID:10377075   PMID:10438935   PMID:10477700   PMID:10556825   PMID:10602408  
PMID:10623819   PMID:10944555   PMID:11078691   PMID:11123288   PMID:11517385   PMID:11520773   PMID:11776680   PMID:11817523   PMID:11847011   PMID:11904449   PMID:11922919   PMID:11929779  
PMID:11935152   PMID:11961404   PMID:11963839   PMID:11983205   PMID:12006387   PMID:12082081   PMID:12097820   PMID:12105209   PMID:12115600   PMID:12172576   PMID:12193695   PMID:12351381  
PMID:12387879   PMID:12433638   PMID:12477932   PMID:12493764   PMID:12587980   PMID:12601490   PMID:12643440   PMID:12650924   PMID:12673844   PMID:12682249   PMID:12700137   PMID:12704784  
PMID:12714597   PMID:12759453   PMID:12788528   PMID:12871600   PMID:12940514   PMID:12958610   PMID:12969778   PMID:14534081   PMID:14550782   PMID:14592496   PMID:14615367   PMID:14684616  
PMID:14691297   PMID:14741380   PMID:14748068   PMID:14762656   PMID:14984317   PMID:15009098   PMID:15059493   PMID:15078922   PMID:15080580   PMID:15116247   PMID:15175347   PMID:15194470  
PMID:15220135   PMID:15225366   PMID:15265790   PMID:15299708   PMID:15304054   PMID:15308572   PMID:15340161   PMID:15489334   PMID:15489374   PMID:15489375   PMID:15525877   PMID:15548573  
PMID:15661077   PMID:15661918   PMID:15710215   PMID:15784173   PMID:15805138   PMID:15806475   PMID:15845907   PMID:15879141   PMID:15979542   PMID:16002075   PMID:16015337   PMID:16127297  
PMID:16184405   PMID:16230423   PMID:16242117   PMID:16317091   PMID:16327982   PMID:16335952   PMID:16344560   PMID:16498082   PMID:16585601   PMID:16644735   PMID:16722038   PMID:16790997  
PMID:16809613   PMID:16874958   PMID:16902065   PMID:16914554   PMID:16977262   PMID:16987074   PMID:17008592   PMID:17022986   PMID:17090406   PMID:17115186   PMID:17116732   PMID:17126824  
PMID:17142773   PMID:17167725   PMID:17192354   PMID:17255534   PMID:17258924   PMID:17292586   PMID:17303384   PMID:17334226   PMID:17352405   PMID:17430469   PMID:17431880   PMID:17437524  
PMID:17497038   PMID:17517105   PMID:17521609   PMID:17530710   PMID:17531998   PMID:17560459   PMID:17564956   PMID:17586618   PMID:17597073   PMID:17599409   PMID:17616653   PMID:17657162  
PMID:17678915   PMID:17702963   PMID:17703412   PMID:17706337   PMID:17706953   PMID:17714716   PMID:17891599   PMID:17906965   PMID:17922685   PMID:17943642   PMID:17962718   PMID:17963163  
PMID:17964973   PMID:17983593   PMID:18078450   PMID:18160848   PMID:18197885   PMID:18212564   PMID:18227515   PMID:18284603   PMID:18308860   PMID:18326231   PMID:18383329   PMID:18406566  
PMID:18420209   PMID:18421029   PMID:18449421   PMID:18462748   PMID:18473733   PMID:18482273   PMID:18490752   PMID:18504269   PMID:18554449   PMID:18564921   PMID:18582564   PMID:18597403  
PMID:18600396   PMID:18613029   PMID:18618671   PMID:18628303   PMID:18633131   PMID:18636124   PMID:18656701   PMID:18666029   PMID:18676680   PMID:18676870   PMID:18692491   PMID:18707907  
PMID:18761738   PMID:18778820   PMID:18787016   PMID:18787184   PMID:18791689   PMID:18813849   PMID:18828734   PMID:18834676   PMID:18846968   PMID:18930765   PMID:18974842   PMID:19002703  
PMID:19021457   PMID:19022587   PMID:19028820   PMID:19057841   PMID:19074885   PMID:19131662   PMID:19134480   PMID:19136619   PMID:19170196   PMID:19208843   PMID:19210349   PMID:19225544  
PMID:19229069   PMID:19236760   PMID:19242838   PMID:19247692   PMID:19249917   PMID:19258923   PMID:19281832   PMID:19342863   PMID:19353432   PMID:19379571   PMID:19391499   PMID:19399399  
PMID:19407977   PMID:19407978   PMID:19417018   PMID:19422386   PMID:19423540   PMID:19452728   PMID:19479237   PMID:19520742   PMID:19526283   PMID:19540498   PMID:19542447   PMID:19554506  
PMID:19559392   PMID:19573080   PMID:19597294   PMID:19604093   PMID:19625176   PMID:19692168   PMID:19729601   PMID:19738201   PMID:19771922   PMID:19773279   PMID:19812370   PMID:19887846  
PMID:19913121   PMID:19948975   PMID:20039412   PMID:20056178   PMID:20112284   PMID:20164172   PMID:20184510   PMID:20197690   PMID:20217071   PMID:20219985   PMID:20233927   PMID:20237496  
PMID:20360250   PMID:20405289   PMID:20406964   PMID:20416077   PMID:20430730   PMID:20438785   PMID:20447702   PMID:20482449   PMID:20485444   PMID:20503287   PMID:20508517   PMID:20536507  
PMID:20568250   PMID:20573493   PMID:20602615   PMID:20603037   PMID:20628086   PMID:20685094   PMID:20714774   PMID:20851866   PMID:20864106   PMID:20880684   PMID:20929696   PMID:20935502  
PMID:20966071   PMID:21030716   PMID:21037509   PMID:21073443   PMID:21099224   PMID:21144825   PMID:21162967   PMID:21172429   PMID:21177856   PMID:21183871   PMID:21184654   PMID:21214384  
PMID:21236267   PMID:21381877   PMID:21520070   PMID:21540635   PMID:21562063   PMID:21594636   PMID:21632263   PMID:21641584   PMID:21804483   PMID:21808112   PMID:21833088   PMID:21843619  
PMID:21873635   PMID:21895545   PMID:21900123   PMID:22001052   PMID:22014578   PMID:22031842   PMID:22093255   PMID:22137570   PMID:22137794   PMID:22183741   PMID:22195873   PMID:22209080  
PMID:22209338   PMID:22269951   PMID:22298164   PMID:22324942   PMID:22366735   PMID:22374129   PMID:22384064   PMID:22448134   PMID:22463742   PMID:22497223   PMID:22505707   PMID:22539325  
PMID:22552687   PMID:22591361   PMID:22593994   PMID:22623428   PMID:22664325   PMID:22694757   PMID:22717098   PMID:22719189   PMID:22734001   PMID:22740338   PMID:22742445   PMID:22874466  
PMID:22879387   PMID:22905988   PMID:22976263   PMID:23042271   PMID:23057424   PMID:23058024   PMID:23117931   PMID:23185512   PMID:23232649   PMID:23242661   PMID:23285079   PMID:23313051  
PMID:23336423   PMID:23344094   PMID:23349048   PMID:23376485   PMID:23396735   PMID:23463506   PMID:23474851   PMID:23533145   PMID:23620790   PMID:23665024   PMID:23677452   PMID:23679262  
PMID:23704882   PMID:23728723   PMID:23770055   PMID:23792525   PMID:23911532   PMID:23934855   PMID:23953534   PMID:24002113   PMID:24002898   PMID:24045955   PMID:24055812   PMID:24075742  
PMID:24088748   PMID:24157824   PMID:24162780   PMID:24168396   PMID:24189753   PMID:24205197   PMID:24282904   PMID:24324686   PMID:24359561   PMID:24378362   PMID:24465662   PMID:24534074  
PMID:24554512   PMID:24583847   PMID:24599548   PMID:24615033   PMID:24628691   PMID:24640675   PMID:24666523   PMID:24771582   PMID:24836091   PMID:24871655   PMID:24883317   PMID:24891186  
PMID:24966171   PMID:24968096   PMID:24998754   PMID:25034460   PMID:25045892   PMID:25052989   PMID:25064159   PMID:25175566   PMID:25245399   PMID:25251368   PMID:25277191   PMID:25287126  
PMID:25413339   PMID:25450269   PMID:25473757   PMID:25638707   PMID:25683512   PMID:25780884   PMID:25784313   PMID:25793408   PMID:25857767   PMID:25925867   PMID:25990052   PMID:25994120  
PMID:26008233   PMID:26031809   PMID:26048716   PMID:26071554   PMID:26108418   PMID:26116870   PMID:26173590   PMID:26216937   PMID:26289958   PMID:26334689   PMID:26337389   PMID:26386411  
PMID:26476083   PMID:26608360   PMID:26625754   PMID:26679764   PMID:26746423   PMID:26824050   PMID:26841644   PMID:26847082   PMID:26849641   PMID:26872904   PMID:26919714   PMID:26955771  
PMID:27044487   PMID:27105996   PMID:27123929   PMID:27155341   PMID:27206739   PMID:27232930   PMID:27245110   PMID:27391418   PMID:27552332   PMID:27585526   PMID:27598970   PMID:27620662  
PMID:27693464   PMID:27701021   PMID:27706617   PMID:27806869   PMID:27839966   PMID:27853845   PMID:27900989   PMID:28093230   PMID:28096537   PMID:28110427   PMID:28122639   PMID:28131673  
PMID:28202840   PMID:28209985   PMID:28214208   PMID:28263384   PMID:28355442   PMID:28461687   PMID:28496046   PMID:28500253   PMID:28514442   PMID:28583863   PMID:28646244   PMID:28675064  
PMID:28764810   PMID:28818665   PMID:28829887   PMID:28851649   PMID:28963466   PMID:29068581   PMID:29076253   PMID:29096583   PMID:29096830   PMID:29133026   PMID:29325582   PMID:29452833  
PMID:29601599   PMID:29627497   PMID:29670110   PMID:29687288   PMID:29854824   PMID:29945479   PMID:30248336   PMID:30388809   PMID:30389659   PMID:30395261   PMID:30597511   PMID:30659926  
PMID:31061324   PMID:31068198   PMID:31086348   PMID:31169028   PMID:31210657   PMID:31310649   PMID:31323164   PMID:31371443   PMID:31391242   PMID:31443713   PMID:31472105   PMID:31743166  
PMID:31904479   PMID:32067855   PMID:32121588   PMID:32127247   PMID:32161015   PMID:32334367   PMID:32492888   PMID:32686027   PMID:32791695   PMID:32847038   PMID:33074857   PMID:33295887  
PMID:33559404   PMID:33574979   PMID:33607153   PMID:33677420   PMID:33694224   PMID:33819746   PMID:33961781   PMID:33966399   PMID:34078723   PMID:34281218   PMID:34325382   PMID:34655203  


Genomics

Comparative Map Data
VCAM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1100,719,742 - 100,739,045 (+)EnsemblGRCh38hg38GRCh38
GRCh381100,719,742 - 100,739,045 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371101,185,298 - 101,204,601 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361100,957,885 - 100,977,189 (+)NCBINCBI36hg18NCBI36
Build 341100,897,317 - 100,916,620NCBI
Celera199,446,448 - 99,465,752 (+)NCBI
Cytogenetic Map1p21.2NCBI
HuRef199,309,886 - 99,329,291 (+)NCBIHuRef
CHM1_11101,301,307 - 101,320,707 (+)NCBICHM1_1
Vcam1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393115,903,669 - 115,923,337 (-)NCBIGRCm39mm39
GRCm39 Ensembl3115,903,598 - 115,923,337 (-)Ensembl
GRCm383116,110,020 - 116,129,688 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3116,109,949 - 116,129,688 (-)EnsemblGRCm38mm10GRCm38
MGSCv373115,812,938 - 115,832,606 (-)NCBIGRCm37mm9NCBIm37
MGSCv363116,102,024 - 116,121,692 (-)NCBImm8
Celera3122,538,966 - 122,558,635 (-)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.17NCBI
Vcam1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22204,038,120 - 204,057,852 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2204,038,114 - 204,057,958 (-)Ensembl
Rnor_6.02219,071,193 - 219,090,931 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2219,071,193 - 219,097,619 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02237,158,192 - 237,177,779 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42212,277,654 - 212,297,376 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12212,240,407 - 212,260,130 (-)NCBI
Celera2196,537,457 - 196,557,044 (-)NCBICelera
RH 3.4 Map21480.6RGD
Cytogenetic Map2q41NCBI
Vcam1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554355,390,751 - 5,411,691 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554355,390,745 - 5,410,025 (+)NCBIChiLan1.0ChiLan1.0
VCAM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11102,091,121 - 102,108,494 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1102,091,336 - 102,107,732 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01103,377,815 - 103,395,118 (+)NCBIMhudiblu_PPA_v0panPan3
VCAM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1649,341,669 - 49,359,841 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl649,342,151 - 49,359,933 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha652,013,558 - 52,031,171 (-)NCBI
ROS_Cfam_1.0649,686,812 - 49,704,968 (-)NCBI
UMICH_Zoey_3.1649,380,130 - 49,397,749 (-)NCBI
UNSW_CanFamBas_1.0649,359,940 - 49,377,559 (-)NCBI
UU_Cfam_GSD_1.0649,789,615 - 49,807,229 (-)NCBI
Vcam1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058110,980,297 - 110,997,141 (+)NCBI
SpeTri2.0NW_004936748785,491 - 802,791 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VCAM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4117,496,908 - 117,511,226 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14117,496,914 - 117,511,211 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24129,040,268 - 129,054,581 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VCAM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12032,616,425 - 32,635,903 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2032,615,333 - 32,635,862 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603825,428,596 - 25,448,051 (+)NCBIVero_WHO_p1.0
Vcam1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248573,606,573 - 3,625,991 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AL009440  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,187,245 - 101,187,331UniSTSGRCh37
Build 361100,959,833 - 100,959,919RGDNCBI36
Celera199,448,396 - 99,448,482RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,311,935 - 99,312,021UniSTS
WI-18941  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,204,232 - 101,204,523UniSTSGRCh37
Build 361100,976,820 - 100,977,111RGDNCBI36
Celera199,465,383 - 99,465,674RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,328,922 - 99,329,213UniSTS
GeneMap99-GB4 RH Map1293.66UniSTS
Whitehead-RH Map1314.0UniSTS
RH39988  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,204,319 - 101,204,502UniSTSGRCh37
Build 361100,976,907 - 100,977,090RGDNCBI36
Celera199,465,470 - 99,465,653RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,329,009 - 99,329,192UniSTS
AL034328  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,187,621 - 101,187,762UniSTSGRCh37
Build 361100,960,209 - 100,960,350RGDNCBI36
Celera199,448,772 - 99,448,913RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,312,311 - 99,312,452UniSTS
GDB:192501  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,185,334 - 101,185,430UniSTSGRCh37
Build 361100,957,922 - 100,958,018RGDNCBI36
Celera199,446,485 - 99,446,581RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,310,024 - 99,310,120UniSTS
GDB:216806  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,185,334 - 101,185,431UniSTSGRCh37
Build 361100,957,922 - 100,958,019RGDNCBI36
Celera199,446,485 - 99,446,582RGD
Cytogenetic Map1p32-p31UniSTS
SGV-R135  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,203,644 - 101,203,948UniSTSGRCh37
Build 361100,976,232 - 100,976,536RGDNCBI36
Celera199,464,795 - 99,465,099RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,328,334 - 99,328,638UniSTS
SGV-R136  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,184,775 - 101,185,378UniSTSGRCh37
Build 361100,957,363 - 100,957,966RGDNCBI36
Celera199,445,926 - 99,446,529RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,309,465 - 99,310,068UniSTS
SGV-R137  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,184,968 - 101,185,378UniSTSGRCh37
Build 361100,957,556 - 100,957,966RGDNCBI36
Celera199,446,119 - 99,446,529RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,309,658 - 99,310,068UniSTS
SGV-R144  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,186,006 - 101,186,320UniSTSGRCh37
Build 361100,958,594 - 100,958,908RGDNCBI36
Celera199,447,157 - 99,447,471RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,310,696 - 99,311,010UniSTS
SGV-R165  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,194,654 - 101,194,951UniSTSGRCh37
Build 361100,967,242 - 100,967,539RGDNCBI36
Celera199,455,805 - 99,456,102RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,319,344 - 99,319,641UniSTS
SGV-R169  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,183,926 - 101,184,465UniSTSGRCh37
Build 361100,956,514 - 100,957,053RGDNCBI36
Celera199,445,077 - 99,445,616RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,308,616 - 99,309,155UniSTS
SGV-R170  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,184,231 - 101,184,794UniSTSGRCh37
Build 361100,956,819 - 100,957,382RGDNCBI36
Celera199,445,382 - 99,445,945RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,308,921 - 99,309,484UniSTS
SGV-R171  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,184,536 - 101,185,085UniSTSGRCh37
GRCh371101,184,536 - 101,185,086UniSTSGRCh37
Build 361100,957,124 - 100,957,673RGDNCBI36
Celera199,445,687 - 99,446,237UniSTS
Celera199,445,687 - 99,446,236RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,309,227 - 99,309,776UniSTS
HuRef199,309,226 - 99,309,776UniSTS
SGV-R173  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,183,487 - 101,184,074UniSTSGRCh37
Build 361100,956,075 - 100,956,662RGDNCBI36
Celera199,444,638 - 99,445,225RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,308,177 - 99,308,764UniSTS
SGV-R178  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,183,775 - 101,183,949UniSTSGRCh37
Build 361100,956,363 - 100,956,537RGDNCBI36
Celera199,444,926 - 99,445,100RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,308,465 - 99,308,639UniSTS
SGV-R230  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,203,829 - 101,204,394UniSTSGRCh37
Build 361100,976,417 - 100,976,982RGDNCBI36
Celera199,464,980 - 99,465,545RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,328,519 - 99,329,084UniSTS
SGV-R231  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,204,013 - 101,204,518UniSTSGRCh37
Build 361100,976,601 - 100,977,106RGDNCBI36
Celera199,465,164 - 99,465,669RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,328,703 - 99,329,208UniSTS
SGV-R232  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,204,318 - 101,204,837UniSTSGRCh37
Build 361100,976,906 - 100,977,425RGDNCBI36
Celera199,465,469 - 99,465,988RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,329,008 - 99,329,527UniSTS
SGV-R233  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,185,171 - 101,185,567UniSTSGRCh37
Build 361100,957,759 - 100,958,155RGDNCBI36
Celera199,446,322 - 99,446,718RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,309,861 - 99,310,257UniSTS
SGV-R234  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,188,529 - 101,188,930UniSTSGRCh37
Build 361100,961,117 - 100,961,518RGDNCBI36
Celera199,449,680 - 99,450,081RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,313,219 - 99,313,620UniSTS
SGV-R235  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,190,087 - 101,190,506UniSTSGRCh37
Build 361100,962,675 - 100,963,094RGDNCBI36
Celera199,451,238 - 99,451,657RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,314,777 - 99,315,196UniSTS
SGV-R236  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,197,920 - 101,198,259UniSTSGRCh37
Build 361100,970,508 - 100,970,847RGDNCBI36
Celera199,459,071 - 99,459,410RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,322,610 - 99,322,949UniSTS
SGV-R239  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,196,732 - 101,197,132UniSTSGRCh37
Build 361100,969,320 - 100,969,720RGDNCBI36
Celera199,457,883 - 99,458,283RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,321,422 - 99,321,822UniSTS
SGV-R240  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,199,909 - 101,200,422UniSTSGRCh37
Build 361100,972,497 - 100,973,010RGDNCBI36
Celera199,461,060 - 99,461,573RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,324,599 - 99,325,112UniSTS
VCAM1_385  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,203,835 - 101,204,714UniSTSGRCh37
Build 361100,976,423 - 100,977,302RGDNCBI36
Celera199,464,986 - 99,465,865RGD
HuRef199,328,525 - 99,329,404UniSTS
SHGC-12401  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,203,926 - 101,204,257UniSTSGRCh37
Build 361100,976,514 - 100,976,845RGDNCBI36
Celera199,465,077 - 99,465,408RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,328,616 - 99,328,947UniSTS
Stanford-G3 RH Map14867.0UniSTS
Whitehead-YAC Contig Map1 UniSTS
NCBI RH Map1712.6UniSTS
GeneMap99-G3 RH Map14823.0UniSTS
AL010034  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371101,187,835 - 101,188,011UniSTSGRCh37
Build 361100,960,423 - 100,960,599RGDNCBI36
Celera199,448,986 - 99,449,162RGD
Cytogenetic Map1p32-p31UniSTS
HuRef199,312,525 - 99,312,701UniSTS

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR126hsa-miR-126-3pMirtarbaseexternal_infoLuciferase reporter assay//Western blot//Reporter Functional MTI18227515
MIR126hsa-miR-126-3pTarbaseexternal_infoReporter GenePOSITIVE
MIR126hsa-miR-126-5pMirecordsexternal_info{unchanged}NA18227515

Predicted Target Of
Summary Value
Count of predictions:933
Count of miRNA genes:278
Interacting mature miRNAs:298
Transcripts:ENST00000294728, ENST00000347652, ENST00000370115, ENST00000370119, ENST00000603679
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 1
Medium 991 1166 900 204 470 131 1810 469 830 318 524 817 76 1 1087 1166 3 2
Low 1322 1308 797 402 691 312 2208 1561 2546 84 831 597 91 117 1501 1
Below cutoff 19 435 14 9 507 10 267 135 339 5 32 37 4 121

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_023034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001199834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_080682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC093428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF536818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK223266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL592446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU121762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF791565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF968655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR749464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB096825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF271680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF280676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF699680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF907575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF917093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M30257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M60335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M73255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M92431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S50587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X53051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000294728   ⟹   ENSP00000294728
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1100,719,742 - 100,739,045 (+)Ensembl
RefSeq Acc Id: ENST00000347652   ⟹   ENSP00000304611
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1100,719,755 - 100,739,045 (+)Ensembl
RefSeq Acc Id: ENST00000370115   ⟹   ENSP00000359133
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1100,719,764 - 100,739,038 (+)Ensembl
RefSeq Acc Id: ENST00000370119   ⟹   ENSP00000359137
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1100,719,742 - 100,738,613 (+)Ensembl
RefSeq Acc Id: ENST00000603679
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1100,735,175 - 100,739,039 (+)Ensembl
RefSeq Acc Id: ENST00000650339   ⟹   ENSP00000497582
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1100,719,742 - 100,739,029 (+)Ensembl
RefSeq Acc Id: NM_001078   ⟹   NP_001069
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381100,719,742 - 100,739,045 (+)NCBI
GRCh371101,185,196 - 101,204,601 (+)ENTREZGENE
Build 361100,957,885 - 100,977,189 (+)NCBI Archive
HuRef199,309,886 - 99,329,291 (+)ENTREZGENE
CHM1_11101,301,307 - 101,320,707 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001199834   ⟹   NP_001186763
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381100,719,742 - 100,739,045 (+)NCBI
GRCh371101,185,196 - 101,204,601 (+)ENTREZGENE
HuRef199,309,886 - 99,329,291 (+)ENTREZGENE
CHM1_11101,301,307 - 101,320,707 (+)NCBI
Sequence:
RefSeq Acc Id: NM_080682   ⟹   NP_542413
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381100,719,742 - 100,739,045 (+)NCBI
GRCh371101,185,196 - 101,204,601 (+)ENTREZGENE
Build 361100,957,885 - 100,977,189 (+)NCBI Archive
HuRef199,309,886 - 99,329,291 (+)ENTREZGENE
CHM1_11101,301,307 - 101,320,707 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001069   ⟸   NM_001078
- Peptide Label: isoform a precursor
- UniProtKB: P19320 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_542413   ⟸   NM_080682
- Peptide Label: isoform b precursor
- UniProtKB: P19320 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001186763   ⟸   NM_001199834
- Peptide Label: isoform c precursor
- UniProtKB: P19320 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000359133   ⟸   ENST00000370115
RefSeq Acc Id: ENSP00000359137   ⟸   ENST00000370119
RefSeq Acc Id: ENSP00000304611   ⟸   ENST00000347652
RefSeq Acc Id: ENSP00000294728   ⟸   ENST00000294728
RefSeq Acc Id: ENSP00000497582   ⟸   ENST00000650339
Protein Domains
Ig-like   Ig-like C2-type

Promoters
RGD ID:6856370
Promoter ID:EPDNEW_H1350
Type:multiple initiation site
Name:VCAM1_1
Description:vascular cell adhesion molecule 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381100,719,742 - 100,719,802EPDNEW
RGD ID:6787216
Promoter ID:HG_KWN:3830
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid
Transcripts:ENST00000370115,   ENST00000370119,   NM_001078,   NM_080682
Position:
Human AssemblyChrPosition (strand)Source
Build 361100,957,659 - 100,958,159 (+)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p31.1-13.3(chr1:72661709-107456880)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051825]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051825]|See cases [RCV000051825] Chr1:72661709..107456880 [GRCh38]
Chr1:73127392..107999502 [GRCh37]
Chr1:72899980..107801025 [NCBI36]
Chr1:1p31.1-13.3
pathogenic
GRCh38/hg38 1p21.3-13.3(chr1:98557000-107949047)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053878]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053878]|See cases [RCV000053878] Chr1:98557000..107949047 [GRCh38]
Chr1:99022556..108491669 [GRCh37]
Chr1:98795144..108293192 [NCBI36]
Chr1:1p21.3-13.3
pathogenic
GRCh38/hg38 1p21.3-13.3(chr1:97410602-110670510)x1 copy number loss See cases [RCV000053877] Chr1:97410602..110670510 [GRCh38]
Chr1:97876158..111213132 [GRCh37]
Chr1:97648746..111014655 [NCBI36]
Chr1:1p21.3-13.3
pathogenic
NM_001078.3(VCAM1):c.935C>T (p.Pro312Leu) single nucleotide variant Malignant melanoma [RCV000063986] Chr1:100729113 [GRCh38]
Chr1:101194669 [GRCh37]
Chr1:100967257 [NCBI36]
Chr1:1p21.2
not provided
NM_001078.3(VCAM1):c.1200C>T (p.Leu400=) single nucleotide variant Malignant melanoma [RCV000063987] Chr1:100729378 [GRCh38]
Chr1:101194934 [GRCh37]
Chr1:100967522 [NCBI36]
Chr1:1p21.2
not provided
GRCh38/hg38 1p21.3-13.3(chr1:97272349-108893138)x1 copy number loss See cases [RCV000135333] Chr1:97272349..108893138 [GRCh38]
Chr1:97737905..109435760 [GRCh37]
Chr1:97510493..109237283 [NCBI36]
Chr1:1p21.3-13.3
pathogenic
GRCh38/hg38 1p31.1-21.1(chr1:83457325-104273917)x3 copy number gain See cases [RCV000135654] Chr1:83457325..104273917 [GRCh38]
Chr1:83923008..104816539 [GRCh37]
Chr1:83695596..104618062 [NCBI36]
Chr1:1p31.1-21.1
pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12
likely benign
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p22.1-11.2(chr1:93837992-121343783)x3 copy number gain See cases [RCV000512354] Chr1:93837992..121343783 [GRCh37]
Chr1:1p22.1-11.2
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p22.1-13.3(chr1:94054724-111671707)x3 copy number gain not provided [RCV000749068] Chr1:94054724..111671707 [GRCh37]
Chr1:1p22.1-13.3
pathogenic
NM_001078.4(VCAM1):c.741C>T (p.Ser247=) single nucleotide variant not provided [RCV000906950] Chr1:100724703 [GRCh38]
Chr1:101190259 [GRCh37]
Chr1:1p21.2
likely benign
NM_001078.4(VCAM1):c.1463A>G (p.His488Arg) single nucleotide variant not provided [RCV000948546] Chr1:100731456 [GRCh38]
Chr1:101197012 [GRCh37]
Chr1:1p21.2
benign
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1
uncertain significance
GRCh37/hg19 1p21.2(chr1:100704867-101205009)x3 copy number gain not provided [RCV001005123] Chr1:100704867..101205009 [GRCh37]
Chr1:1p21.2
uncertain significance
NM_001078.4(VCAM1):c.117T>C (p.Ile39=) single nucleotide variant not provided [RCV000886047] Chr1:100720528 [GRCh38]
Chr1:101186084 [GRCh37]
Chr1:1p21.2
likely benign
NM_001078.4(VCAM1):c.341-9C>T single nucleotide variant not provided [RCV000911247] Chr1:100723011 [GRCh38]
Chr1:101188567 [GRCh37]
Chr1:1p21.2
likely benign
Single allele microsatellite not provided [RCV001357051] Chr1:100741256..100741257 [GRCh38]
Chr1:101206812..101206813 [GRCh37]
Chr1:1p21.2
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12663 AgrOrtholog
COSMIC VCAM1 COSMIC
Ensembl Genes ENSG00000162692 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000294728 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000304611 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000359133 UniProtKB/TrEMBL
  ENSP00000359137 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000497582 UniProtKB/TrEMBL
Ensembl Transcript ENST00000294728 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000347652 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000370115 UniProtKB/TrEMBL
  ENST00000370119 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000650339 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000162692 GTEx
HGNC ID HGNC:12663 ENTREZGENE
Human Proteome Map VCAM1 Human Proteome Map
InterPro ICAM_VCAM_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_C2-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VCAM-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:7412 UniProtKB/Swiss-Prot
NCBI Gene 7412 ENTREZGENE
OMIM 192225 OMIM
PANTHER PTHR13771:SF14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam C2-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00047 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37286 PharmGKB
PRINTS ICAMVCAM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VCAM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGv UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A3B3ISS8_HUMAN UniProtKB/TrEMBL
  E9PDD2_HUMAN UniProtKB/TrEMBL
  F2YYR6_HUMAN UniProtKB/TrEMBL
  F8UU18_HUMAN UniProtKB/TrEMBL
  F8UV74_HUMAN UniProtKB/TrEMBL
  G0ZFQ0_HUMAN UniProtKB/TrEMBL
  G0ZI12_HUMAN UniProtKB/TrEMBL
  P19320 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A8K6R7 UniProtKB/Swiss-Prot
  B4DKS4 UniProtKB/Swiss-Prot
  E9PDD1 UniProtKB/Swiss-Prot
  Q6NUP8 UniProtKB/Swiss-Prot