Glra1 (glycine receptor, alpha 1 subunit) - Rat Genome Database

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Gene: Glra1 (glycine receptor, alpha 1 subunit) Mus musculus
Analyze
Symbol: Glra1
Name: glycine receptor, alpha 1 subunit
RGD ID: 730940
MGI Page MGI
Description: Enables extracellularly glycine-gated chloride channel activity; glycine binding activity; and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Involved in glycinergic synaptic transmission; inhibitory postsynaptic potential; and response to alcohol. Acts upstream of or within several processes, including adult walking behavior; regulation of respiratory gaseous exchange by nervous system process; and righting reflex. Located in several cellular components, including external side of plasma membrane; inhibitory synapse; and postsynaptic membrane. Is active in glycinergic synapse. Is expressed in brain; brainstem; and spinal cord. Used to study hyperekplexia and hyperekplexia 1. Human ortholog(s) of this gene implicated in hyperekplexia 1. Orthologous to human GLRA1 (glycine receptor alpha 1); PARTICIPATES IN Inhibitory synaptic transmission pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; genistein.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: B230397M16Rik; glycine receptor 48 kDa subunit; glycine receptor strychnine-binding subunit; glycine receptor subunit alpha-1; nmf1; nmf11; o; os; oscillator; ot; spasmodic; spd
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391155,405,065 - 55,499,024 (-)NCBIGRCm39mm39
GRCm39 Ensembl1155,405,064 - 55,499,024 (-)Ensembl
GRCm381155,514,239 - 55,608,198 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1155,514,238 - 55,608,198 (-)EnsemblGRCm38mm10GRCm38
MGSCv371155,328,315 - 55,421,292 (-)NCBIGRCm37mm9NCBIm37
MGSCv361155,358,236 - 55,451,213 (-)NCBImm8
Celera1160,300,816 - 60,360,053 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1133.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal behavior  (IAGP)
abnormal channel response  (IAGP)
abnormal CNS synaptic transmission  (IAGP)
abnormal cone electrophysiology  (IAGP)
abnormal eye electrophysiology  (IEA)
abnormal gait  (IAGP)
abnormal inhibitory postsynaptic currents  (IAGP)
abnormal miniature inhibitory postsynaptic currents  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal nervous system electrophysiology  (IAGP)
abnormal posture  (IAGP)
abnormal pulmonary respiratory rate  (IAGP)
abnormal righting response  (IEA)
abnormal single cell response  (IAGP)
abnormal startle reflex  (IAGP)
abnormal tail movements  (IAGP)
ataxia  (IEA)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased neuron number  (IAGP)
decreased white adipose tissue amount  (IEA)
hyperactivity  (IAGP)
hyperekplexia  (IAGP)
impaired acrosome reaction  (IAGP)
impaired coordination  (IAGP)
impaired fertilization  (IAGP)
impaired righting response  (IAGP)
increased b-wave amplitude  (IAGP)
increased startle reflex  (IAGP)
increased susceptibility to pharmacologically induced seizures  (IEA)
limb grasping  (IAGP)
male infertility  (IAGP)
muscle hypertonia  (IAGP)
muscle spasm  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IEA)
premature death  (IAGP)
preweaning lethality, complete penetrance  (IAGP)
seizures  (IAGP)
short stride length  (IAGP)
small spleen  (IEA)
thymus atrophy  (IEA)
tonic-clonic seizures  (IEA)
tremors  (IAGP)
References

Additional References at PubMed
PMID:489953   PMID:1334371   PMID:1371219   PMID:1424806   PMID:3429842   PMID:4557539   PMID:7507926   PMID:7874121   PMID:7891186   PMID:7920629   PMID:7920630   PMID:8062927  
PMID:8298642   PMID:8406478   PMID:8733750   PMID:9051263   PMID:9070927   PMID:9087981   PMID:9145798   PMID:9606417   PMID:9812897   PMID:10349636   PMID:11042159   PMID:11076688  
PMID:11076861   PMID:11217851   PMID:11275284   PMID:11685575   PMID:11742725   PMID:11923415   PMID:12183685   PMID:12380014   PMID:12477932   PMID:12837931   PMID:12954867   PMID:16141072  
PMID:16141073   PMID:16420443   PMID:16461637   PMID:16602821   PMID:16672662   PMID:16800867   PMID:16964444   PMID:17028313   PMID:17114051   PMID:17145751   PMID:17154252   PMID:17308032  
PMID:17920294   PMID:18445051   PMID:18721822   PMID:18854036   PMID:19208226   PMID:19244519   PMID:19528249   PMID:20600650   PMID:20826655   PMID:21135047   PMID:21267068   PMID:21486794  
PMID:21486797   PMID:21850450   PMID:21873635   PMID:22037201   PMID:22037202   PMID:22723691   PMID:22988142   PMID:22995908   PMID:23230213   PMID:23603522   PMID:23639821   PMID:24390226  
PMID:24801766   PMID:24952961   PMID:25231618   PMID:28197549   PMID:28706241   PMID:28724750   PMID:29407767   PMID:29910711   PMID:30721695   PMID:32579955   PMID:32848605   PMID:33727056  


Genomics

Comparative Map Data
Glra1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391155,405,065 - 55,499,024 (-)NCBIGRCm39mm39
GRCm39 Ensembl1155,405,064 - 55,499,024 (-)Ensembl
GRCm381155,514,239 - 55,608,198 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1155,514,238 - 55,608,198 (-)EnsemblGRCm38mm10GRCm38
MGSCv371155,328,315 - 55,421,292 (-)NCBIGRCm37mm9NCBIm37
MGSCv361155,358,236 - 55,451,213 (-)NCBImm8
Celera1160,300,816 - 60,360,053 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1133.12NCBI
GLRA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5151,822,513 - 151,924,851 (-)EnsemblGRCh38hg38GRCh38
GRCh385151,822,513 - 151,924,851 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh375151,202,074 - 151,304,412 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365151,182,361 - 151,284,596 (-)NCBINCBI36hg18NCBI36
Build 345151,182,360 - 151,284,596NCBI
Celera5147,283,467 - 147,385,844 (-)NCBI
Cytogenetic Map5q33.1NCBI
HuRef5146,347,483 - 146,449,349 (-)NCBIHuRef
CHM1_15150,634,496 - 150,736,836 (-)NCBICHM1_1
Glra1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21039,625,853 - 39,727,897 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1039,629,459 - 39,727,162 (-)Ensembl
Rnor_6.01040,851,955 - 40,954,364 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1040,855,559 - 40,953,651 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01040,687,069 - 40,785,100 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41040,922,867 - 41,021,767 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11040,936,489 - 41,035,390 (-)NCBI
Celera1038,958,969 - 39,055,009 (-)NCBICelera
Cytogenetic Map10q22NCBI
Glra1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554086,236,092 - 6,333,166 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554086,236,092 - 6,333,166 (-)NCBIChiLan1.0ChiLan1.0
GLRA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15153,248,488 - 153,350,573 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5153,248,488 - 153,350,567 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05147,245,741 - 147,348,555 (-)NCBIMhudiblu_PPA_v0panPan3
GLRA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1457,443,094 - 57,541,494 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl457,443,999 - 57,528,376 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha457,296,776 - 57,348,297 (+)NCBI
ROS_Cfam_1.0457,919,593 - 57,971,180 (+)NCBI
UMICH_Zoey_3.1457,735,798 - 57,787,335 (+)NCBI
UNSW_CanFamBas_1.0457,834,258 - 57,885,784 (+)NCBI
UU_Cfam_GSD_1.0458,337,576 - 58,389,066 (+)NCBI
Glra1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213112,367,383 - 112,460,891 (+)NCBI
SpeTri2.0NW_00493651510,816,712 - 10,896,958 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLRA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1671,141,893 - 71,230,367 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11671,140,751 - 71,236,867 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21677,317,685 - 77,407,159 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLRA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12354,384,452 - 54,485,957 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2354,387,229 - 54,484,372 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603423,216,388 - 23,318,088 (+)NCBIVero_WHO_p1.0
Glra1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473337,153,348 - 37,238,201 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
Glra1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381155,520,926 - 55,521,068UniSTSGRCm38
MGSCv371155,334,428 - 55,334,570UniSTSGRCm37
Celera1160,306,926 - 60,307,068UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map1130.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112881775462817873Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115417484467187585Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5417484463428696Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112827504662275149Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115419011565213015Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112588179959881914Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113787775360511890Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11890000061500000Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11330000063000000Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113111738265117382Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112867832062678320Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11330000060800000Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113220975066209867Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:690
Count of miRNA genes:184
Interacting mature miRNAs:193
Transcripts:ENSMUST00000075603, ENSMUST00000102716, ENSMUST00000108853
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK045685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY129229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S73717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S73718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000075603   ⟹   ENSMUSP00000075032
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1155,405,064 - 55,498,647 (-)Ensembl
GRCm38.p6 Ensembl1155,514,238 - 55,607,821 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102716   ⟹   ENSMUSP00000099777
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1155,405,064 - 55,499,024 (-)Ensembl
GRCm38.p6 Ensembl1155,514,238 - 55,608,198 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108853   ⟹   ENSMUSP00000104481
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1155,405,064 - 55,498,559 (-)Ensembl
GRCm38.p6 Ensembl1155,514,238 - 55,607,733 (-)Ensembl
RefSeq Acc Id: NM_001290821   ⟹   NP_001277750
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391155,405,065 - 55,499,024 (-)NCBI
GRCm381155,514,239 - 55,608,198 (-)NCBI
Celera1160,300,242 - 60,360,053 (-)NCBI
Sequence:
RefSeq Acc Id: NM_020492   ⟹   NP_065238
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391155,405,065 - 55,499,024 (-)NCBI
GRCm381155,514,239 - 55,608,198 (-)NCBI
MGSCv371155,328,315 - 55,421,292 (-)RGD
Celera1160,300,242 - 60,360,053 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_065238   ⟸   NM_020492
- Peptide Label: isoform 2 precursor
- UniProtKB: Q5NCT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277750   ⟸   NM_001290821
- Peptide Label: isoform 1 precursor
- UniProtKB: Q64018 (UniProtKB/Swiss-Prot),   Q5NCT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000075032   ⟸   ENSMUST00000075603
RefSeq Acc Id: ENSMUSP00000104481   ⟸   ENSMUST00000108853
RefSeq Acc Id: ENSMUSP00000099777   ⟸   ENSMUST00000102716
Protein Domains
Neur_chan_LBD   Neur_chan_memb

Promoters
RGD ID:8674710
Promoter ID:EPDNEW_M15386
Type:initiation region
Name:Glra1_2
Description:Mus musculus glycine receptor, alpha 1 subunit , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15387  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381155,607,996 - 55,608,056EPDNEW
RGD ID:8674712
Promoter ID:EPDNEW_M15387
Type:multiple initiation site
Name:Glra1_1
Description:Mus musculus glycine receptor, alpha 1 subunit , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15386  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381155,608,198 - 55,608,258EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95747 AgrOrtholog
Ensembl Genes ENSMUSG00000000263 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000075032 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000099777 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000104481 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000075603 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000102716 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000108853 UniProtKB/TrEMBL
Gene3D-CATH 2.70.170.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GABAA/Glycine_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glycine_rcpt_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glycine_rcpt_A1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_chan_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14654 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:95747 ENTREZGENE
NCBI Gene 14654 ENTREZGENE
PANTHER PTHR18945 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Glra1 PhenoGen
PRINTS GABAARECEPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GLYRALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GLYRALPHA1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF63712 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF90112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs LIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt GLRA1_MOUSE UniProtKB/Swiss-Prot
  Q5NCT9 ENTREZGENE, UniProtKB/TrEMBL
  Q5NCU0_MOUSE UniProtKB/TrEMBL
  Q64018 ENTREZGENE
UniProt Secondary Q5NCT8 UniProtKB/Swiss-Prot
  Q64019 UniProtKB/Swiss-Prot
  Q9R0Y6 UniProtKB/Swiss-Prot
  Q9R0Y7 UniProtKB/Swiss-Prot