PPP3CA (protein phosphatase 3 catalytic subunit alpha) - Rat Genome Database

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Gene: PPP3CA (protein phosphatase 3 catalytic subunit alpha) Homo sapiens
Analyze
Symbol: PPP3CA
Name: protein phosphatase 3 catalytic subunit alpha
RGD ID: 730900
HGNC Page HGNC:9314
Description: Enables several functions, including ATPase binding activity; calmodulin binding activity; and calmodulin-dependent protein phosphatase activity. Involved in several processes, including calcineurin-NFAT signaling cascade; peptidyl-serine dephosphorylation; and response to calcium ion. Located in several cellular components, including cytosol; dendritic spine; and nucleoplasm. Part of calcineurin complex. Colocalizes with cytoplasmic side of plasma membrane. Implicated in developmental and epileptic encephalopathy 91. Biomarker of cholangiocarcinoma; focal segmental glomerulosclerosis; and schizophrenia.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ACCIID; calcineurin A alpha; calmodulin-dependent calcineurin A subunit alpha isoform; CALN; CALNA; CALNA1; CAM-PRP catalytic subunit; CCN1; CNA alpha; CNA1; DEE91; IECEE; IECEE1; PPP2B; protein phosphatase 2B, catalytic subunit, alpha isoform; protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform; protein phosphatase 3 (formerly 2b), catalytic subunit, alpha isoform (calcineurin a alpha); serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384101,023,418 - 101,347,526 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl4101,023,409 - 101,348,278 (-)EnsemblGRCh38hg38GRCh38
GRCh374101,944,575 - 102,268,683 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364102,163,610 - 102,487,376 (-)NCBINCBI36Build 36hg18NCBI36
Build 344102,301,764 - 102,625,531NCBI
Celera499,241,833 - 99,567,826 (-)NCBICelera
Cytogenetic Map4q24NCBI
HuRef497,682,764 - 98,006,594 (-)NCBIHuRef
CHM1_14101,921,069 - 102,245,098 (-)NCBICHM1_1
T2T-CHM13v2.04104,338,695 - 104,662,217 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,3-Trichloropropane  (EXP)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (ISO)
2-deoxy-D-glucose  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxynon-2-enal  (EXP)
5-fluorouracil  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acetazolamide  (ISO)
acetylleucyl-leucyl-norleucinal  (ISO)
acrolein  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP)
alpha-pinene  (EXP)
ammonium chloride  (ISO)
arecoline  (ISO)
aristolochic acid A  (EXP)
Aroclor 1254  (ISO)
arsenous acid  (EXP,ISO)
atorvastatin calcium  (ISO)
benzatropine  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
benzyl acetate  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (EXP)
bisphenol F  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (EXP)
capsaicin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP,ISO)
chlordecone  (ISO)
chlorendic acid  (EXP)
chlorpyrifos  (ISO)
cisplatin  (EXP)
clozapine  (ISO)
cocaine  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (ISO)
cyclosporin A  (ISO)
cypermethrin  (EXP)
dexamethasone  (EXP)
diallyl disulfide  (ISO)
diarsenic trioxide  (EXP,ISO)
dimercaprol  (ISO)
diphenylmethane-4,4'-diisocyanate  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
entinostat  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
famotidine  (ISO)
fenofibrate  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
formaldehyde  (EXP)
fulvestrant  (EXP)
furan  (ISO)
gallic acid  (EXP)
gamma-tocopherol  (ISO)
gentamycin  (ISO)
glyphosate  (EXP)
haloperidol  (ISO)
histamine  (ISO)
hydrogen peroxide  (ISO)
indometacin  (EXP)
irinotecan  (EXP)
ivermectin  (EXP)
lipopolysaccharide  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methotrexate  (EXP)
methylmercury chloride  (EXP)
metoprolol  (ISO)
nitric oxide  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perindopril  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
piroxicam  (EXP)
propiconazole  (ISO)
quercetin  (EXP)
resveratrol  (EXP)
rimonabant  (ISO)
risperidone  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 431542  (EXP)
SCH 23390  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP)
sodium fluoride  (ISO)
Soman  (ISO)
staurosporine  (EXP,ISO)
tacrolimus hydrate  (EXP,ISO)
tert-butyl hydroperoxide  (EXP)
thapsigargin  (EXP)
tocopherol  (ISO)
topotecan  (ISO)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
Tylophorine  (EXP)
valproic acid  (EXP)
vinclozolin  (ISO)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
aging  (IEA,ISO)
brain development  (IEA)
brain development  (IEA,ISO)
calcineurin-mediated signaling  (IBA,IEA,IMP)
calcineurin-NFAT signaling cascade  (IBA,IDA,IEA,IMP,ISO)
calcium ion transport  (IEA,ISO)
calcium-mediated signaling  (IEA,ISO)
cardiac muscle hypertrophy in response to stress  (IEA,ISO)
cellular response to glucose stimulus  (IEA)
dendrite morphogenesis  (IEA,ISO)
dephosphorylation  (IEA,ISO,TAS)
epidermis development  (IEA,ISS)
excitatory postsynaptic potential  (IEA,ISO)
G1/S transition of mitotic cell cycle  (IEA,ISO)
keratinocyte differentiation  (IEA,ISS)
modulation of chemical synaptic transmission  (IEA,ISO,ISS)
multicellular organismal response to stress  (IEA,ISO)
negative regulation of calcium ion import across plasma membrane  (NAS)
negative regulation of chromatin binding  (IEA,ISO)
negative regulation of dendrite morphogenesis  (IEA,ISO)
negative regulation of gene expression  (IEA)
negative regulation of insulin secretion  (IEA)
negative regulation of miRNA processing  (IEA)
negative regulation of signaling  (IEA,ISS)
negative regulation of voltage-gated calcium channel activity  (NAS)
peptidyl-serine dephosphorylation  (IMP)
positive regulation of activated T cell proliferation  (IEA,ISS)
positive regulation of calcineurin-NFAT signaling cascade  (NAS)
positive regulation of calcium ion import across plasma membrane  (NAS)
positive regulation of cardiac muscle hypertrophy  (IEA)
positive regulation of cardiac muscle hypertrophy in response to stress  (IEA)
positive regulation of cell adhesion  (IMP)
positive regulation of cell migration  (IMP)
positive regulation of connective tissue replacement  (IEA)
positive regulation of DNA-binding transcription factor activity  (IEA,ISO)
positive regulation of endocytosis  (IEA)
positive regulation of gene expression  (IEA)
positive regulation of glomerulus development  (IEA,ISS)
positive regulation of osteoblast differentiation  (IEA,ISS)
positive regulation of osteoclast differentiation  (IEA,ISS)
positive regulation of saliva secretion  (IEA,ISS)
positive regulation of transcription by RNA polymerase II  (IDA,IEA,ISO)
positive regulation of voltage-gated calcium channel activity  (NAS)
postsynaptic modulation of chemical synaptic transmission  (IEA)
protein dephosphorylation  (IDA,IEA,IMP,ISO,NAS)
protein import into nucleus  (IEA,ISO)
regulation of cell proliferation involved in kidney morphogenesis  (IEA,ISS)
renal filtration  (IEA,ISS)
response to amphetamine  (IEA,ISO)
response to calcium ion  (IDA)
skeletal muscle fiber development  (IEA,ISO,ISS)
skeletal muscle tissue regeneration  (TAS)
T cell activation  (TAS)
T cell activation  (TAS)
transition between fast and slow fiber  (IEA,ISO)
wound healing  (TAS)
wound healing  (TAS)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Abnormal corpus callosum morphology  (IAGP)
Abnormal myelination  (IAGP)
Abnormality of vision  (IAGP)
Absent speech  (IAGP)
Arthrogryposis multiplex congenita  (IAGP)
Ataxia  (IAGP)
Attention deficit hyperactivity disorder  (IAGP)
Atypical absence seizure  (IAGP)
Autism  (IAGP)
Autistic behavior  (IAGP)
Autosomal dominant inheritance  (IAGP)
Bilateral tonic-clonic seizure  (IAGP)
Brachydactyly  (IAGP)
Cerebral atrophy  (IAGP)
Cerebral visual impairment  (IAGP)
Childhood onset  (IAGP)
Cleft palate  (IAGP)
Coarse facial features  (IAGP)
Congenital onset  (IAGP)
Craniosynostosis  (IAGP)
Decreased body weight  (IAGP)
Decreased fetal movement  (IAGP)
Delayed CNS myelination  (IAGP)
Delayed speech and language development  (IAGP)
Developmental regression  (IAGP)
Difficulty walking  (IAGP)
Downslanted palpebral fissures  (IAGP)
Dyskinesia  (IAGP)
EEG with multifocal slow activity  (IAGP)
Encephalopathy  (IAGP)
Epileptic encephalopathy  (IAGP)
Epileptic spasm  (IAGP)
Failure to thrive  (IAGP)
Feeding difficulties  (IAGP)
Focal motor seizure  (IAGP)
Gastroesophageal reflux  (IAGP)
Generalized hypotonia  (IAGP)
Global developmental delay  (IAGP)
High forehead  (IAGP)
Hoarse voice  (IAGP)
Hydronephrosis  (IAGP)
Hypertelorism  (IAGP)
Hypodontia  (IAGP)
Hyporeflexia  (IAGP)
Hypotonia  (IAGP)
Hypsarrhythmia  (IAGP)
Impulsivity  (IAGP)
Infantile onset  (IAGP)
Intellectual disability  (IAGP)
Limb hypertonia  (IAGP)
Mental deterioration  (IAGP)
Microcephaly  (IAGP)
Micrognathia  (IAGP)
Multifocal epileptiform discharges  (IAGP)
Myoclonic seizure  (IAGP)
Myoclonus  (IAGP)
Nystagmus  (IAGP)
Optic atrophy  (IAGP)
Plagiocephaly  (IAGP)
Poor head control  (IAGP)
Prominent nasal tip  (IAGP)
Ptosis  (IAGP)
Reduced cerebral white matter volume  (IAGP)
Retinal degeneration  (IAGP)
Rigidity  (IAGP)
Seizure  (IAGP)
Short philtrum  (IAGP)
Short stature  (IAGP)
Single transverse palmar crease  (IAGP)
Spasticity  (IAGP)
Status epilepticus  (IAGP)
Talipes equinovarus  (IAGP)
Thick vermilion border  (IAGP)
Thin ribs  (IAGP)
Tonic seizure  (IAGP)
Tremor  (IAGP)
Trigonocephaly  (IAGP)
Unsteady gait  (IAGP)
Vesicoureteral reflux  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Expression of protein phosphatase 2B (calcineurin) subunit A isoforms in rat hippocampus after traumatic brain injury. Bales JW, etal., J Neurotrauma. 2010 Jan;27(1):109-20.
2. Decreased hippocampal expression of the susceptibility gene PPP3CC and other calcineurin subunits in schizophrenia. Eastwood SL, etal., Biol Psychiatry. 2005 Apr 1;57(7):702-10. doi: 10.1016/j.biopsych.2004.12.029.
3. Heart block in mice overexpressing calcineurin but not NF-AT3. Gillis AM, etal., Cardiovasc Res. 2004 Dec 1;64(3):488-95.
4. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
5. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
6. Cyclosporin A Inhibits Hypoxia-induced Pulmonary Hypertension and Right Ventricle Hypertrophy. Koulmann N, etal., Am J Respir Crit Care Med. 2006 Jun 23;.
7. Identification of key genes and pathways associated with cholangiocarcinoma development based on weighted gene correlation network analysis. Liu J, etal., PeerJ. 2019 Oct 31;7:e7968. doi: 10.7717/peerj.7968. eCollection 2019.
8. Restricted and regulated overexpression reveals calcineurin as a key component in the transition from short-term to long-term memory. Mansuy IM, etal., Cell 1998 Jan 9;92(1):39-49.
9. FK506, a calcineurin inhibitor, prevents cadmium-induced testicular toxicity in mice. Martin LJ, etal., Toxicol Sci. 2007 Dec;100(2):474-85. doi: 10.1093/toxsci/kfm229. Epub 2007 Sep 4.
10. A calcineurin-dependent transcriptional pathway for cardiac hypertrophy. Molkentin JD, etal., Cell. 1998 Apr 17;93(2):215-28.
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. The linker region joining the catalytic and the regulatory domains of CnA is essential for binding to NFAT. Rodriguez A, etal., J Biol Chem. 2005 Mar 18;280(11):9980-4. Epub 2005 Jan 25.
15. Calcineurin functions in Ca(2+)-activated cell death in mammalian cells. Shibasaki F and McKeon F, J Cell Biol. 1995 Nov;131(3):735-43.
16. Dual roles of modulatory calcineurin-interacting protein 1 in cardiac hypertrophy. Vega RB, etal., Proc Natl Acad Sci U S A 2003 Jan 21;100(2):669-74. Epub 2003 Jan 6.
17. Role of calcineurin (CN) in kidney glomerular podocyte: CN inhibitor ameliorated proteinuria by inhibiting the redistribution of CN at the slit diaphragm. Wakamatsu A, etal., Physiol Rep. 2016 Mar;4(6). pii: e12679. doi: 10.14814/phy2.12679.
18. Calcium-calcineurin signaling in the regulation of cardiac hypertrophy. Wilkins BJ and Molkentin JD, Biochem Biophys Res Commun. 2004 Oct 1;322(4):1178-91.
19. Endotracheal calcineurin inhibition ameliorates injury in an experimental model of lung ischemia-reperfusion. Woolley SM, etal., J Thorac Cardiovasc Surg. 2004 Feb;127(2):376-84.
20. MicroRNA-30 family members regulate calcium/calcineurin signaling in podocytes. Wu J, etal., J Clin Invest. 2015 Nov 2;125(11):4091-106. doi: 10.1172/JCI81061. Epub 2015 Oct 5.
21. Reduced calcineurin protein levels and activity in exon-1 mouse models of Huntington's disease: role in excitotoxicity. Xifro X, etal., Neurobiol Dis. 2009 Dec;36(3):461-9. Epub 2009 Sep 4.
22. DARPP-32, Jack of All Trades... Master of Which? Yger M and Girault JA, Front Behav Neurosci. 2011 Sep 8;5:56. doi: 10.3389/fnbeh.2011.00056. eCollection 2011.
Additional References at PubMed
PMID:1659808   PMID:2162844   PMID:2556704   PMID:2848250   PMID:6330098   PMID:7528941   PMID:7543369   PMID:8392375   PMID:8521476   PMID:8524402   PMID:8631904   PMID:8978785  
PMID:9109491   PMID:9655484   PMID:9765270   PMID:9880537   PMID:10089876   PMID:10195903   PMID:10861295   PMID:11005320   PMID:11076863   PMID:11114196   PMID:11123943   PMID:11316738  
PMID:11439183   PMID:11478781   PMID:11513882   PMID:11714752   PMID:11842093   PMID:12021260   PMID:12063245   PMID:12102656   PMID:12135494   PMID:12218175   PMID:12357034   PMID:12477932  
PMID:12482669   PMID:12510191   PMID:12574411   PMID:12577067   PMID:12586544   PMID:12809556   PMID:14704270   PMID:15454081   PMID:15489334   PMID:15489336   PMID:15489953   PMID:15671020  
PMID:15757646   PMID:15955804   PMID:16150694   PMID:16189514   PMID:16381901   PMID:17102134   PMID:17215518   PMID:17320203   PMID:17474147   PMID:17478429   PMID:17640527   PMID:18029348  
PMID:18218901   PMID:18296442   PMID:18384083   PMID:18628988   PMID:18660489   PMID:18815128   PMID:18838687   PMID:18846255   PMID:19034380   PMID:19154138   PMID:19285944   PMID:19404396  
PMID:19458075   PMID:19492085   PMID:19706527   PMID:19879877   PMID:19913121   PMID:20107831   PMID:20379146   PMID:20379614   PMID:20413672   PMID:20422345   PMID:20501444   PMID:20514436  
PMID:20590401   PMID:20593291   PMID:20605778   PMID:20628086   PMID:20647544   PMID:20700529   PMID:21047202   PMID:21070662   PMID:21233773   PMID:21420386   PMID:21516116   PMID:21647268  
PMID:21674474   PMID:21785830   PMID:21873635   PMID:21900206   PMID:21903422   PMID:21979947   PMID:22100452   PMID:22164265   PMID:22270398   PMID:22285318   PMID:22343722   PMID:22360420  
PMID:22506312   PMID:22688515   PMID:22691791   PMID:22715070   PMID:22739212   PMID:22763476   PMID:22863883   PMID:22939629   PMID:23118980   PMID:23317196   PMID:23428871   PMID:23443559  
PMID:23468591   PMID:23744075   PMID:23824189   PMID:23888774   PMID:24018048   PMID:24086760   PMID:24107951   PMID:24191726   PMID:24298017   PMID:24418105   PMID:24514567   PMID:24672054  
PMID:24905733   PMID:24954618   PMID:25122797   PMID:25286016   PMID:25416956   PMID:25637383   PMID:25720963   PMID:26186194   PMID:26248042   PMID:26264872   PMID:26344197   PMID:26812016  
PMID:26871637   PMID:27187005   PMID:27307045   PMID:27880917   PMID:27911714   PMID:27974827   PMID:27990298   PMID:28065597   PMID:28126489   PMID:28514442   PMID:28611215   PMID:28842480  
PMID:28881575   PMID:28942967   PMID:28967377   PMID:29229926   PMID:29326975   PMID:29409956   PMID:29432562   PMID:29507755   PMID:29568061   PMID:29715546   PMID:29791485   PMID:30254215  
PMID:30380548   PMID:30536857   PMID:30611118   PMID:30699351   PMID:30718414   PMID:30776328   PMID:31091453   PMID:31267705   PMID:31399054   PMID:31415762   PMID:31586073   PMID:31619735  
PMID:31620119   PMID:31980649   PMID:32296183   PMID:32422433   PMID:32513696   PMID:32707033   PMID:32814053   PMID:32859215   PMID:32994395   PMID:33545068   PMID:33961781   PMID:33963760  
PMID:34446558   PMID:34711683   PMID:34795676   PMID:35013556   PMID:35256949   PMID:35271311   PMID:35324524   PMID:35509820   PMID:35831314   PMID:35844135   PMID:36114006   PMID:36215168  
PMID:36525928   PMID:36779422  


Genomics

Comparative Map Data
PPP3CA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384101,023,418 - 101,347,526 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl4101,023,409 - 101,348,278 (-)EnsemblGRCh38hg38GRCh38
GRCh374101,944,575 - 102,268,683 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364102,163,610 - 102,487,376 (-)NCBINCBI36Build 36hg18NCBI36
Build 344102,301,764 - 102,625,531NCBI
Celera499,241,833 - 99,567,826 (-)NCBICelera
Cytogenetic Map4q24NCBI
HuRef497,682,764 - 98,006,594 (-)NCBIHuRef
CHM1_14101,921,069 - 102,245,098 (-)NCBICHM1_1
T2T-CHM13v2.04104,338,695 - 104,662,217 (-)NCBIT2T-CHM13v2.0
Ppp3ca
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393136,375,778 - 136,643,488 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3136,375,885 - 136,643,488 (+)EnsemblGRCm39 Ensembl
GRCm383136,669,714 - 136,937,727 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3136,670,124 - 136,937,727 (+)EnsemblGRCm38mm10GRCm38
MGSCv373136,333,734 - 136,598,743 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363136,608,157 - 136,873,166 (+)NCBIMGSCv36mm8
Celera3143,090,942 - 143,357,512 (+)NCBICelera
Cytogenetic Map3G3NCBI
Ppp3ca
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22225,165,981 - 225,440,978 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2225,165,766 - 225,438,974 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2232,923,341 - 233,194,495 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02230,823,106 - 231,094,243 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02225,687,726 - 225,958,877 (+)NCBIRnor_WKY
Rnor_6.02241,909,332 - 242,186,861 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2241,909,832 - 242,184,854 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02260,463,144 - 260,737,186 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42234,130,176 - 234,409,232 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12234,116,915 - 234,395,972 (+)NCBI
Celera2217,359,756 - 217,630,340 (+)NCBICelera
Cytogenetic Map2q43NCBI
Ppp3ca
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554966,908,224 - 7,059,816 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554966,934,542 - 7,059,745 (+)NCBIChiLan1.0ChiLan1.0
PPP3CA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14104,113,512 - 104,435,954 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4104,113,520 - 104,435,394 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0493,447,095 - 93,770,339 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PPP3CA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13222,688,141 - 22,996,693 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3222,688,143 - 22,996,688 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3218,960,549 - 19,234,052 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03222,910,701 - 23,219,264 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3222,912,571 - 23,219,917 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13222,888,729 - 23,197,885 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03222,670,376 - 22,979,752 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03216,885,817 - 17,195,548 (+)NCBIUU_Cfam_GSD_1.0
Ppp3ca
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530118,494,657 - 18,802,106 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365201,987,045 - 2,146,540 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365201,987,989 - 2,146,473 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP3CA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8119,428,779 - 119,753,105 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18119,429,181 - 119,754,615 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28128,461,857 - 128,883,250 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPP3CA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1749,149,044 - 49,478,796 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl749,148,933 - 49,321,013 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603727,622,035 - 27,951,191 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp3ca
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248306,317,968 - 6,581,892 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248306,318,352 - 6,584,232 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PPP3CA
181 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 4q22.3-28.3(chr4:96092893-136410207)x3 copy number gain See cases [RCV000051776] Chr4:96092893..136410207 [GRCh38]
Chr4:97014044..137331362 [GRCh37]
Chr4:97233067..137550812 [NCBI36]
Chr4:4q22.3-28.3
pathogenic
GRCh38/hg38 4q22.2-32.3(chr4:92913386-165299707)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|See cases [RCV000051775] Chr4:92913386..165299707 [GRCh38]
Chr4:93834537..166220859 [GRCh37]
Chr4:94053560..166440309 [NCBI36]
Chr4:4q22.2-32.3
pathogenic
GRCh38/hg38 4q22.1-24(chr4:92610413-101521991)x1 copy number loss See cases [RCV000140412] Chr4:92610413..101521991 [GRCh38]
Chr4:93531564..102443148 [GRCh37]
Chr4:93750587..102662171 [NCBI36]
Chr4:4q22.1-24
pathogenic
GRCh38/hg38 4q24(chr4:100579010-101522050)x1 copy number loss See cases [RCV000140237] Chr4:100579010..101522050 [GRCh38]
Chr4:101500167..102443207 [GRCh37]
Chr4:101719190..102662230 [NCBI36]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1308_1311dup (p.Ser438fs) duplication Epileptic encephalopathy, infantile or early childhood, 1 [RCV000625968] Chr4:101032294..101032295 [GRCh38]
Chr4:101953451..101953452 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.1255_1256del (p.Ser419fs) microsatellite Epileptic encephalopathy, infantile or early childhood, 1 [RCV000677432] Chr4:101032350..101032351 [GRCh38]
Chr4:101953507..101953508 [GRCh37]
Chr4:4q24
likely pathogenic
NM_000944.5(PPP3CA):c.1340-2A>G single nucleotide variant not provided [RCV000578819] Chr4:101029197 [GRCh38]
Chr4:101950354 [GRCh37]
Chr4:4q24
pathogenic|likely pathogenic
GRCh37/hg19 4q24(chr4:102236913-102375456)x1 copy number loss See cases [RCV000446511] Chr4:102236913..102375456 [GRCh37]
Chr4:4q24
likely benign
GRCh37/hg19 4p16.3-q35.2(chr4:12440-190904441)x3 copy number gain See cases [RCV000446653] Chr4:12440..190904441 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4q24(chr4:101871042-101986204)x1 copy number loss See cases [RCV000446711] Chr4:101871042..101986204 [GRCh37]
Chr4:4q24
uncertain significance
GRCh37/hg19 4q21.23-24(chr4:85805268-103678797)x1 copy number loss See cases [RCV000445741] Chr4:85805268..103678797 [GRCh37]
Chr4:4q21.23-24
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473) copy number gain See cases [RCV000510453] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
NM_000944.5(PPP3CA):c.843C>G (p.His281Gln) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV000509768] Chr4:101083203 [GRCh38]
Chr4:102004360 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.1333C>T (p.Gln445Ter) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV000509789] Chr4:101032273 [GRCh38]
Chr4:101953430 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.275A>G (p.His92Arg) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV000509875]|Inborn genetic diseases [RCV001267106]|Seizure [RCV001027515] Chr4:101109063 [GRCh38]
Chr4:102030220 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.844G>A (p.Glu282Lys) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV000509989]|Inborn genetic diseases [RCV000624048]|not provided [RCV002269282] Chr4:101083202 [GRCh38]
Chr4:102004359 [GRCh37]
Chr4:4q24
pathogenic|likely pathogenic
NM_000944.5(PPP3CA):c.1339G>A (p.Ala447Thr) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV000510091]|not provided [RCV001865669] Chr4:101032267 [GRCh38]
Chr4:101953424 [GRCh37]
Chr4:4q24
pathogenic|uncertain significance
GRCh37/hg19 4q22.1-35.2(chr4:93071152-190957473)x3 copy number gain See cases [RCV000510970] Chr4:93071152..190957473 [GRCh37]
Chr4:4q22.1-35.2
pathogenic
GRCh37/hg19 4q22.1-24(chr4:92201567-103043808)x1 copy number loss See cases [RCV000511194] Chr4:92201567..103043808 [GRCh37]
Chr4:4q22.1-24
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473)x3 copy number gain See cases [RCV000512241] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
NM_000944.5(PPP3CA):c.-108GCG[10] microsatellite not provided [RCV001643877] Chr4:101346877..101346878 [GRCh38]
Chr4:102268034..102268035 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.1417G>A (p.Ala473Thr) single nucleotide variant Arthrogryposis, cleft palate, craniosynostosis, and impaired intellectual development [RCV000735834]|not provided [RCV002536544] Chr4:101026014 [GRCh38]
Chr4:101947171 [GRCh37]
Chr4:4q24
pathogenic|likely pathogenic
NM_000944.5(PPP3CA):c.1290dup (p.Met431fs) duplication Epileptic encephalopathy, infantile or early childhood, 1 [RCV000735832] Chr4:101032315..101032316 [GRCh38]
Chr4:101953472..101953473 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.1408T>C (p.Phe470Leu) single nucleotide variant Arthrogryposis, cleft palate, craniosynostosis, and impaired intellectual development [RCV000735833] Chr4:101026023 [GRCh38]
Chr4:101947180 [GRCh37]
Chr4:4q24
pathogenic
GRCh37/hg19 4q24(chr4:101959144-101960878)x1 copy number loss not provided [RCV000743873] Chr4:101959144..101960878 [GRCh37]
Chr4:4q24
benign
GRCh37/hg19 4q24(chr4:101960259-101965295)x1 copy number loss not provided [RCV000743874] Chr4:101960259..101965295 [GRCh37]
Chr4:4q24
benign
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190915650)x3 copy number gain not provided [RCV000743155] Chr4:49450..190915650 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190963766)x3 copy number gain not provided [RCV000743156] Chr4:49450..190963766 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:11525-191028879)x3 copy number gain not provided [RCV000743147] Chr4:11525..191028879 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
NM_000944.5(PPP3CA):c.1339+102G>A single nucleotide variant not provided [RCV001646077] Chr4:101032165 [GRCh38]
Chr4:101953322 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.782+14A>C single nucleotide variant not provided [RCV001691674] Chr4:101093762 [GRCh38]
Chr4:102014919 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.91G>T (p.Ala31Ser) single nucleotide variant Inborn genetic diseases [RCV002570793]|not provided [RCV001572949] Chr4:101196084 [GRCh38]
Chr4:102117241 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1271_1274dup (p.Leu426fs) duplication not provided [RCV000762100] Chr4:101032331..101032332 [GRCh38]
Chr4:101953488..101953489 [GRCh37]
Chr4:4q24
likely pathogenic
GRCh37/hg19 4q24(chr4:101953182-102026137)x1 copy number loss See cases [RCV000790576] Chr4:101953182..102026137 [GRCh37]
Chr4:4q24
likely pathogenic
NM_000944.5(PPP3CA):c.22G>T (p.Asp8Tyr) single nucleotide variant not provided [RCV001090878] Chr4:101346775 [GRCh38]
Chr4:102267932 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1386A>G (p.Ser462=) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002479003]|not provided [RCV000883170] Chr4:101026045 [GRCh38]
Chr4:101947202 [GRCh37]
Chr4:4q24
benign|likely benign
NM_000944.5(PPP3CA):c.1095G>C (p.Leu365=) single nucleotide variant not provided [RCV000948281] Chr4:101061148 [GRCh38]
Chr4:101982305 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.144G>A (p.Ala48=) single nucleotide variant not provided [RCV000961560] Chr4:101196031 [GRCh38]
Chr4:102117188 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.1311_1315del (p.Ser438fs) deletion Epileptic encephalopathy, infantile or early childhood, 1 [RCV000987459] Chr4:101032291..101032295 [GRCh38]
Chr4:101953448..101953452 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.1394del (p.His465fs) deletion not provided [RCV001008246] Chr4:101026037 [GRCh38]
Chr4:101947194 [GRCh37]
Chr4:4q24
likely pathogenic
NM_000944.5(PPP3CA):c.1283dup (p.Thr429fs) duplication Arthrogryposis, cleft palate, craniosynostosis, and impaired intellectual development [RCV002283526]|Epileptic encephalopathy, infantile or early childhood, 1 [RCV001198048]|not provided [RCV002512144] Chr4:101032322..101032323 [GRCh38]
Chr4:101953479..101953480 [GRCh37]
Chr4:4q24
pathogenic|likely pathogenic
NC_000004.11:g.(?_102001669)_(103806607_?)del deletion not provided [RCV003105379] Chr4:102001669..103806607 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.1530_1537dup (p.Asn513fs) duplication Autism spectrum disorder [RCV003128041] Chr4:101025893..101025894 [GRCh38]
Chr4:101947050..101947051 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1340-178_1340-159del deletion not provided [RCV001618020] Chr4:101029354..101029373 [GRCh38]
Chr4:101950511..101950530 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.*44del deletion not provided [RCV001713901] Chr4:101025821 [GRCh38]
Chr4:101946978 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.497-191C>T single nucleotide variant not provided [RCV001687601] Chr4:101098703 [GRCh38]
Chr4:102019860 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.*43_*44del deletion not provided [RCV001681993] Chr4:101025821..101025822 [GRCh38]
Chr4:101946978..101946979 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.385-45G>A single nucleotide variant not provided [RCV001618847] Chr4:101099767 [GRCh38]
Chr4:102020924 [GRCh37]
Chr4:4q24
benign
NC_000004.11:g.(?_101947022)_(106061534_?)del deletion not provided [RCV003107794] Chr4:101947022..106061534 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.1340-184T>G single nucleotide variant not provided [RCV001609298] Chr4:101029379 [GRCh38]
Chr4:101950536 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.1156+7G>T single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002502983]|not provided [RCV000957570] Chr4:101061080 [GRCh38]
Chr4:101982237 [GRCh37]
Chr4:4q24
benign|likely benign
NM_000944.5(PPP3CA):c.-108GCG[11] microsatellite not provided [RCV001637634] Chr4:101346877..101346878 [GRCh38]
Chr4:102268034..102268035 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.1292T>C (p.Met431Thr) single nucleotide variant not provided [RCV001553508] Chr4:101032314 [GRCh38]
Chr4:101953471 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.384+228C>T single nucleotide variant not provided [RCV001596262] Chr4:101108726 [GRCh38]
Chr4:102029883 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.59-50T>C single nucleotide variant not provided [RCV001596593] Chr4:101196166 [GRCh38]
Chr4:102117323 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.*74A>G single nucleotide variant not provided [RCV001649629] Chr4:101025791 [GRCh38]
Chr4:101946948 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.*42_*44del deletion not provided [RCV001611939] Chr4:101025821..101025823 [GRCh38]
Chr4:101946978..101946980 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.1477G>A (p.Asp493Asn) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV001031007] Chr4:101025954 [GRCh38]
Chr4:101947111 [GRCh37]
Chr4:4q24
likely pathogenic
NM_000944.5(PPP3CA):c.1157-103del deletion not provided [RCV001696549] Chr4:101040669 [GRCh38]
Chr4:101961826 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.1218G>A (p.Met406Ile) single nucleotide variant not provided [RCV001216094] Chr4:101040505 [GRCh38]
Chr4:101961662 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1370-8C>G single nucleotide variant not provided [RCV002280271] Chr4:101026069 [GRCh38]
Chr4:101947226 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1251_1252del (p.Ser417fs) deletion Epileptic encephalopathy, infantile or early childhood, 1 [RCV002280296] Chr4:101032354..101032355 [GRCh38]
Chr4:101953511..101953512 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.89C>T (p.Thr30Ile) single nucleotide variant not provided [RCV001312044] Chr4:101196086 [GRCh38]
Chr4:102117243 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1417G>T (p.Ala473Ser) single nucleotide variant Arthrogryposis, cleft palate, craniosynostosis, and impaired intellectual development [RCV001374728] Chr4:101026014 [GRCh38]
Chr4:101947171 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.1299dup (p.Ser434fs) duplication Epileptic encephalopathy, infantile or early childhood, 1 [RCV001374727] Chr4:101032306..101032307 [GRCh38]
Chr4:101953463..101953464 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.59-12350G>A single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV001542288] Chr4:101208466 [GRCh38]
Chr4:102129623 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.249G>A (p.Ala83=) single nucleotide variant not provided [RCV001714941] Chr4:101195926 [GRCh38]
Chr4:102117083 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.58+74T>C single nucleotide variant not provided [RCV001673367] Chr4:101346665 [GRCh38]
Chr4:102267822 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.58+75T>G single nucleotide variant not provided [RCV001652640] Chr4:101346664 [GRCh38]
Chr4:102267821 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.259+79C>T single nucleotide variant not provided [RCV001710624] Chr4:101195837 [GRCh38]
Chr4:102116994 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.58+74_58+78del deletion not provided [RCV001536302] Chr4:101346661..101346665 [GRCh38]
Chr4:102267818..102267822 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.579A>G (p.Gln193=) single nucleotide variant not provided [RCV001727294] Chr4:101098430 [GRCh38]
Chr4:102019587 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.20T>C (p.Ile7Thr) single nucleotide variant not provided [RCV001772693] Chr4:101346777 [GRCh38]
Chr4:102267934 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1194C>A (p.Asn398Lys) single nucleotide variant not provided [RCV001799874] Chr4:101040529 [GRCh38]
Chr4:101961686 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1480G>T (p.Ala494Ser) single nucleotide variant not provided [RCV002008702] Chr4:101025951 [GRCh38]
Chr4:101947108 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.179T>C (p.Val60Ala) single nucleotide variant not provided [RCV001874643] Chr4:101195996 [GRCh38]
Chr4:102117153 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1302C>T (p.Ser434=) single nucleotide variant not provided [RCV001949597] Chr4:101032304 [GRCh38]
Chr4:101953461 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.740A>G (p.His247Arg) single nucleotide variant not provided [RCV002045110] Chr4:101093818 [GRCh38]
Chr4:102014975 [GRCh37]
Chr4:4q24
uncertain significance
GRCh37/hg19 4q22.3-25(chr4:95490755-109977216)x3 copy number gain not provided [RCV001827745] Chr4:95490755..109977216 [GRCh37]
Chr4:4q22.3-25
likely pathogenic
NM_000944.5(PPP3CA):c.656A>G (p.Lys219Arg) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002506948]|not provided [RCV001914921] Chr4:101093902 [GRCh38]
Chr4:102015059 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1544G>A (p.Ser515Asn) single nucleotide variant Developmental disorder [RCV001843779] Chr4:101025887 [GRCh38]
Chr4:101947044 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1538A>G (p.Asn513Ser) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002484882]|not provided [RCV001971185] Chr4:101025893 [GRCh38]
Chr4:101947050 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.98A>G (p.Glu33Gly) single nucleotide variant not provided [RCV001863379] Chr4:101196077 [GRCh38]
Chr4:102117234 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1489A>T (p.Asn497Tyr) single nucleotide variant not provided [RCV001948631] Chr4:101025942 [GRCh38]
Chr4:101947099 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1241+3G>T single nucleotide variant not provided [RCV002021941] Chr4:101040479 [GRCh38]
Chr4:101961636 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1529C>T (p.Thr510Met) single nucleotide variant not provided [RCV001982795] Chr4:101025902 [GRCh38]
Chr4:101947059 [GRCh37]
Chr4:4q24
uncertain significance
NC_000004.11:g.(?_101947022)_(104640832_?)del deletion Beta-D-mannosidosis [RCV001946800]|not provided [RCV003107924] Chr4:101947022..104640832 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.422C>G (p.Pro141Arg) single nucleotide variant not provided [RCV001892669] Chr4:101099685 [GRCh38]
Chr4:102020842 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.58+42297A>C single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV001839164] Chr4:101304442 [GRCh38]
Chr4:102225599 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.929A>T (p.Asn310Ile) single nucleotide variant not provided [RCV001871340] Chr4:101080558 [GRCh38]
Chr4:102001715 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.34_43del (p.Ser12fs) deletion Epileptic encephalopathy, infantile or early childhood, 1 [RCV001843836] Chr4:101346754..101346763 [GRCh38]
Chr4:102267911..102267920 [GRCh37]
Chr4:4q24
likely pathogenic
NM_000944.5(PPP3CA):c.58+4A>G single nucleotide variant not provided [RCV001890810] Chr4:101346735 [GRCh38]
Chr4:102267892 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1354A>G (p.Ile452Val) single nucleotide variant not provided [RCV002007105] Chr4:101029181 [GRCh38]
Chr4:101950338 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1135T>G (p.Ser379Ala) single nucleotide variant not provided [RCV002006525] Chr4:101061108 [GRCh38]
Chr4:101982265 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.38C>T (p.Thr13Met) single nucleotide variant not provided [RCV002002271] Chr4:101346759 [GRCh38]
Chr4:102267916 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.524ATG[3] (p.Asp176dup) microsatellite not provided [RCV002005946] Chr4:101098479..101098480 [GRCh38]
Chr4:102019636..102019637 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.844G>C (p.Glu282Gln) single nucleotide variant not provided [RCV001947280] Chr4:101083202 [GRCh38]
Chr4:102004359 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.110A>C (p.Asn37Thr) single nucleotide variant not provided [RCV001908398] Chr4:101196065 [GRCh38]
Chr4:102117222 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.125G>A (p.Arg42His) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002484869]|not provided [RCV001969254] Chr4:101196050 [GRCh38]
Chr4:102117207 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.991A>G (p.Ile331Val) single nucleotide variant not provided [RCV001890688] Chr4:101063322 [GRCh38]
Chr4:101984479 [GRCh37]
Chr4:4q24
uncertain significance
GRCh37/hg19 4q12-31.21(chr4:52866944-143582507)x3 copy number gain not provided [RCV001827738] Chr4:52866944..143582507 [GRCh37]
Chr4:4q12-31.21
pathogenic
NM_000944.5(PPP3CA):c.426A>G (p.Lys142=) single nucleotide variant not provided [RCV002003471] Chr4:101099681 [GRCh38]
Chr4:102020838 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.248C>T (p.Ala83Val) single nucleotide variant Inborn genetic diseases [RCV002552189]|not provided [RCV001911937] Chr4:101195927 [GRCh38]
Chr4:102117084 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1156+4A>G single nucleotide variant not provided [RCV002043674] Chr4:101061083 [GRCh38]
Chr4:101982240 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1156+3A>G single nucleotide variant not provided [RCV001982131] Chr4:101061084 [GRCh38]
Chr4:101982241 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1492T>A (p.Ser498Thr) single nucleotide variant not provided [RCV001957141] Chr4:101025939 [GRCh38]
Chr4:101947096 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1251_1254del (p.Ser417fs) deletion not provided [RCV001944688] Chr4:101032352..101032355 [GRCh38]
Chr4:101953509..101953512 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.34T>C (p.Ser12Pro) single nucleotide variant not provided [RCV001963345] Chr4:101346763 [GRCh38]
Chr4:102267920 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.259+1G>T single nucleotide variant not provided [RCV002000449] Chr4:101195915 [GRCh38]
Chr4:102117072 [GRCh37]
Chr4:4q24
likely pathogenic
NM_000944.5(PPP3CA):c.1240A>G (p.Arg414Gly) single nucleotide variant not provided [RCV002036905] Chr4:101040483 [GRCh38]
Chr4:101961640 [GRCh37]
Chr4:4q24
likely pathogenic
NM_000944.5(PPP3CA):c.860+3G>A single nucleotide variant not provided [RCV001887273] Chr4:101083183 [GRCh38]
Chr4:102004340 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.702C>A (p.Asp234Glu) single nucleotide variant not provided [RCV001999846] Chr4:101093856 [GRCh38]
Chr4:102015013 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.228A>T (p.Lys76Asn) single nucleotide variant not provided [RCV001923275] Chr4:101195947 [GRCh38]
Chr4:102117104 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.520G>A (p.Val174Ile) single nucleotide variant not provided [RCV002014944] Chr4:101098489 [GRCh38]
Chr4:102019646 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1161A>G (p.Ala387=) single nucleotide variant not provided [RCV002001383] Chr4:101040562 [GRCh38]
Chr4:101961719 [GRCh37]
Chr4:4q24
likely benign|uncertain significance
NM_000944.5(PPP3CA):c.535A>G (p.Met179Val) single nucleotide variant not provided [RCV002037346] Chr4:101098474 [GRCh38]
Chr4:102019631 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1245A>C (p.Glu415Asp) single nucleotide variant not provided [RCV002014926] Chr4:101032361 [GRCh38]
Chr4:101953518 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1433G>A (p.Arg478Gln) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002479707]|not provided [RCV001989638] Chr4:101025998 [GRCh38]
Chr4:101947155 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1395_1414del (p.His465fs) deletion not provided [RCV001974416] Chr4:101026017..101026036 [GRCh38]
Chr4:101947174..101947193 [GRCh37]
Chr4:4q24
likely pathogenic
NM_000944.5(PPP3CA):c.865C>T (p.Arg289Cys) single nucleotide variant not provided [RCV002010791] Chr4:101080622 [GRCh38]
Chr4:102001779 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.197C>G (p.Thr66Arg) single nucleotide variant not provided [RCV001898371] Chr4:101195978 [GRCh38]
Chr4:102117135 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1148G>T (p.Gly383Val) single nucleotide variant not provided [RCV001899684] Chr4:101061095 [GRCh38]
Chr4:101982252 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.86T>C (p.Leu29Pro) single nucleotide variant not provided [RCV002013732] Chr4:101196089 [GRCh38]
Chr4:102117246 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.829A>G (p.Ile277Val) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002490045]|not provided [RCV001867799] Chr4:101083217 [GRCh38]
Chr4:102004374 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1559T>G (p.Ile520Ser) single nucleotide variant not provided [RCV001878173] Chr4:101025872 [GRCh38]
Chr4:101947029 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.416T>A (p.Leu139His) single nucleotide variant not provided [RCV001869918] Chr4:101099691 [GRCh38]
Chr4:102020848 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.218G>A (p.Arg73Gln) single nucleotide variant not provided [RCV001865094] Chr4:101195957 [GRCh38]
Chr4:102117114 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1082-5T>G single nucleotide variant not provided [RCV001955455] Chr4:101061166 [GRCh38]
Chr4:101982323 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1288_1289insC (p.Gly430fs) insertion not provided [RCV001951936] Chr4:101032317..101032318 [GRCh38]
Chr4:101953474..101953475 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.606G>C (p.Leu202Phe) single nucleotide variant not provided [RCV002029714] Chr4:101098403 [GRCh38]
Chr4:102019560 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.799G>A (p.Glu267Lys) single nucleotide variant not provided [RCV001898718] Chr4:101083247 [GRCh38]
Chr4:102004404 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.82C>T (p.Arg28Trp) single nucleotide variant not provided [RCV001938035] Chr4:101196093 [GRCh38]
Chr4:102117250 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.241A>G (p.Ile81Val) single nucleotide variant not provided [RCV001998262] Chr4:101195934 [GRCh38]
Chr4:102117091 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.101T>G (p.Val34Gly) single nucleotide variant not provided [RCV001998326] Chr4:101196074 [GRCh38]
Chr4:102117231 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.314G>T (p.Gly105Val) single nucleotide variant not provided [RCV002016257] Chr4:101109024 [GRCh38]
Chr4:102030181 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.527A>T (p.Asp176Val) single nucleotide variant not provided [RCV001971965] Chr4:101098482 [GRCh38]
Chr4:102019639 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1265C>T (p.Thr422Met) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002497958]|Inborn genetic diseases [RCV002579604]|not provided [RCV002028135] Chr4:101032341 [GRCh38]
Chr4:101953498 [GRCh37]
Chr4:4q24
uncertain significance
NC_000004.11:g.(?_101947022)_(102030255_?)dup duplication not provided [RCV002014369] Chr4:101947022..102030255 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.109A>G (p.Asn37Asp) single nucleotide variant not provided [RCV001920561] Chr4:101196066 [GRCh38]
Chr4:102117223 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1339+10C>T single nucleotide variant not provided [RCV001921570] Chr4:101032257 [GRCh38]
Chr4:101953414 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1082-9T>A single nucleotide variant not provided [RCV001977818] Chr4:101061170 [GRCh38]
Chr4:101982327 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.497-20C>G single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002487001]|not provided [RCV002210807] Chr4:101098532 [GRCh38]
Chr4:102019689 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.462A>G (p.Arg154=) single nucleotide variant not provided [RCV002169572] Chr4:101099645 [GRCh38]
Chr4:102020802 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.138A>G (p.Leu46=) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002498237]|not provided [RCV002207701] Chr4:101196037 [GRCh38]
Chr4:102117194 [GRCh37]
Chr4:4q24
benign|likely benign
NM_000944.5(PPP3CA):c.1340-15C>T single nucleotide variant not provided [RCV002128621] Chr4:101029210 [GRCh38]
Chr4:101950367 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.496+11T>C single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002498142]|not provided [RCV002165594] Chr4:101099600 [GRCh38]
Chr4:102020757 [GRCh37]
Chr4:4q24
benign|likely benign
NM_000944.5(PPP3CA):c.1473C>G (p.Pro491=) single nucleotide variant not provided [RCV002089278] Chr4:101025958 [GRCh38]
Chr4:101947115 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.144G>T (p.Ala48=) single nucleotide variant not provided [RCV002191355] Chr4:101196031 [GRCh38]
Chr4:102117188 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.861-14T>A single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002498220]|not provided [RCV002209667] Chr4:101080640 [GRCh38]
Chr4:102001797 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.496+15A>G single nucleotide variant not provided [RCV002130688] Chr4:101099596 [GRCh38]
Chr4:102020753 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.204T>C (p.Gly68=) single nucleotide variant not provided [RCV002107036] Chr4:101195971 [GRCh38]
Chr4:102117128 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.783-7del deletion Epileptic encephalopathy, infantile or early childhood, 1 [RCV002507867]|not provided [RCV002169850] Chr4:101083270 [GRCh38]
Chr4:102004427 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.588G>A (p.Leu196=) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002494285]|not provided [RCV002124698] Chr4:101098421 [GRCh38]
Chr4:102019578 [GRCh37]
Chr4:4q24
benign|likely benign
NM_000944.5(PPP3CA):c.1156+20G>C single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002494286]|not provided [RCV002124716] Chr4:101061067 [GRCh38]
Chr4:101982224 [GRCh37]
Chr4:4q24
benign|likely benign
NM_000944.5(PPP3CA):c.1369+15C>A single nucleotide variant not provided [RCV002129127] Chr4:101029151 [GRCh38]
Chr4:101950308 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.270C>T (p.Asp90=) single nucleotide variant not provided [RCV002109276] Chr4:101109068 [GRCh38]
Chr4:102030225 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.417C>G (p.Leu139=) single nucleotide variant not provided [RCV002074525] Chr4:101099690 [GRCh38]
Chr4:102020847 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.843C>T (p.His281=) single nucleotide variant not provided [RCV002125176] Chr4:101083203 [GRCh38]
Chr4:102004360 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.468A>G (p.Leu156=) single nucleotide variant not provided [RCV002165685] Chr4:101099639 [GRCh38]
Chr4:102020796 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1241+17T>C single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002500298]|not provided [RCV002148366] Chr4:101040465 [GRCh38]
Chr4:101961622 [GRCh37]
Chr4:4q24
benign|likely benign
NM_000944.5(PPP3CA):c.519C>T (p.Arg173=) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002507847]|not provided [RCV002089865] Chr4:101098490 [GRCh38]
Chr4:102019647 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.207A>G (p.Ala69=) single nucleotide variant not provided [RCV002208231] Chr4:101195968 [GRCh38]
Chr4:102117125 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1369+13G>C single nucleotide variant not provided [RCV002169760] Chr4:101029153 [GRCh38]
Chr4:101950310 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.450T>C (p.Asn150=) single nucleotide variant not provided [RCV002209811] Chr4:101099657 [GRCh38]
Chr4:102020814 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.834C>A (p.Leu278=) single nucleotide variant not provided [RCV002146592] Chr4:101083212 [GRCh38]
Chr4:102004369 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.384+9A>G single nucleotide variant not provided [RCV002093163] Chr4:101108945 [GRCh38]
Chr4:102030102 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.260-20A>T single nucleotide variant not provided [RCV002195024] Chr4:101109098 [GRCh38]
Chr4:102030255 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.517C>T (p.Arg173Cys) single nucleotide variant not provided [RCV002094994] Chr4:101098492 [GRCh38]
Chr4:102019649 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.750C>T (p.His250=) single nucleotide variant not provided [RCV002076515] Chr4:101093808 [GRCh38]
Chr4:102014965 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.345C>T (p.Phe115=) single nucleotide variant not provided [RCV002212277] Chr4:101108993 [GRCh38]
Chr4:102030150 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.558C>A (p.Pro186=) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002486884]|not provided [RCV002107897] Chr4:101098451 [GRCh38]
Chr4:102019608 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.782+8T>C single nucleotide variant not provided [RCV002078660] Chr4:101093768 [GRCh38]
Chr4:102014925 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.58+16C>T single nucleotide variant not provided [RCV002194332] Chr4:101346723 [GRCh38]
Chr4:102267880 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.955+18C>A single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002486907]|not provided [RCV002130104] Chr4:101080514 [GRCh38]
Chr4:102001671 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.444T>C (p.Arg148=) single nucleotide variant not provided [RCV002194097] Chr4:101099663 [GRCh38]
Chr4:102020820 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1038C>T (p.Phe346=) single nucleotide variant not provided [RCV002079402] Chr4:101063275 [GRCh38]
Chr4:101984432 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.87T>A (p.Leu29=) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002508078]|not provided [RCV002114561] Chr4:101196088 [GRCh38]
Chr4:102117245 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.384+14A>G single nucleotide variant not provided [RCV002196568] Chr4:101108940 [GRCh38]
Chr4:102030097 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.497-5A>G single nucleotide variant not provided [RCV002092560] Chr4:101098517 [GRCh38]
Chr4:102019674 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1241+12C>T single nucleotide variant not provided [RCV002077013] Chr4:101040470 [GRCh38]
Chr4:101961627 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1479C>T (p.Asp493=) single nucleotide variant not provided [RCV002093554] Chr4:101025952 [GRCh38]
Chr4:101947109 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.783-6T>C single nucleotide variant not provided [RCV002172247] Chr4:101083269 [GRCh38]
Chr4:102004426 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1339+13_1339+15dup duplication Epileptic encephalopathy, infantile or early childhood, 1 [RCV002494273]|not provided [RCV002115786] Chr4:101032251..101032252 [GRCh38]
Chr4:101953408..101953409 [GRCh37]
Chr4:4q24
benign|likely benign
NM_000944.5(PPP3CA):c.760A>G (p.Arg254Gly) single nucleotide variant not provided [RCV002214320] Chr4:101093798 [GRCh38]
Chr4:102014955 [GRCh37]
Chr4:4q24
likely pathogenic|uncertain significance
NM_000944.5(PPP3CA):c.1410C>T (p.Phe470=) single nucleotide variant not provided [RCV002170646] Chr4:101026021 [GRCh38]
Chr4:101947178 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.643-9T>A single nucleotide variant not provided [RCV002193159] Chr4:101093924 [GRCh38]
Chr4:102015081 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1428A>G (p.Leu476=) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002500117]|not provided [RCV002076551] Chr4:101026003 [GRCh38]
Chr4:101947160 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.291T>C (p.Asp97=) single nucleotide variant not provided [RCV002133367] Chr4:101109047 [GRCh38]
Chr4:102030204 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.1241+13G>A single nucleotide variant not provided [RCV002149550] Chr4:101040469 [GRCh38]
Chr4:101961626 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.518G>A (p.Arg173His) single nucleotide variant not provided [RCV002170007] Chr4:101098491 [GRCh38]
Chr4:102019648 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1156+15C>G single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002486957]|not provided [RCV002150828] Chr4:101061072 [GRCh38]
Chr4:101982229 [GRCh37]
Chr4:4q24
benign|likely benign
NM_000944.5(PPP3CA):c.1157-18C>T single nucleotide variant not provided [RCV002101539] Chr4:101040584 [GRCh38]
Chr4:101961741 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.897C>T (p.Phe299=) single nucleotide variant not provided [RCV002177956] Chr4:101080590 [GRCh38]
Chr4:102001747 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.369G>T (p.Gly123=) single nucleotide variant not provided [RCV002158366] Chr4:101108969 [GRCh38]
Chr4:102030126 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.384+18C>T single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002507926]|not provided [RCV002219606] Chr4:101108936 [GRCh38]
Chr4:102030093 [GRCh37]
Chr4:4q24
benign|likely benign
NM_000944.5(PPP3CA):c.1227G>C (p.Val409=) single nucleotide variant not provided [RCV002135401] Chr4:101040496 [GRCh38]
Chr4:101961653 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.782+7A>G single nucleotide variant not provided [RCV002220376] Chr4:101093769 [GRCh38]
Chr4:102014926 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.955+18C>T single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002496104]|not provided [RCV002179215] Chr4:101080514 [GRCh38]
Chr4:102001671 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.168G>A (p.Leu56=) single nucleotide variant not provided [RCV002098411] Chr4:101196007 [GRCh38]
Chr4:102117164 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1425C>T (p.Gly475=) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002494090]|not provided [RCV002202361] Chr4:101026006 [GRCh38]
Chr4:101947163 [GRCh37]
Chr4:4q24
benign|likely benign
NM_000944.5(PPP3CA):c.1260G>A (p.Val420=) single nucleotide variant not provided [RCV002143500] Chr4:101032346 [GRCh38]
Chr4:101953503 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.243T>C (p.Ile81=) single nucleotide variant not provided [RCV002118335] Chr4:101195932 [GRCh38]
Chr4:102117089 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.860+18T>C single nucleotide variant not provided [RCV002219373] Chr4:101083168 [GRCh38]
Chr4:102004325 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.643-9T>G single nucleotide variant not provided [RCV002122302] Chr4:101093924 [GRCh38]
Chr4:102015081 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.385-5C>T single nucleotide variant not provided [RCV002162628] Chr4:101099727 [GRCh38]
Chr4:102020884 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1338C>T (p.Ser446=) single nucleotide variant not provided [RCV002100036] Chr4:101032268 [GRCh38]
Chr4:101953425 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.783-4G>A single nucleotide variant not provided [RCV002101830] Chr4:101083267 [GRCh38]
Chr4:102004424 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.497-10C>T single nucleotide variant not provided [RCV002177387] Chr4:101098522 [GRCh38]
Chr4:102019679 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1530G>A (p.Thr510=) single nucleotide variant not provided [RCV002119897] Chr4:101025901 [GRCh38]
Chr4:101947058 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1524C>T (p.Asn508=) single nucleotide variant not provided [RCV002082220] Chr4:101025907 [GRCh38]
Chr4:101947064 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.385-20A>T single nucleotide variant not provided [RCV002198790] Chr4:101099742 [GRCh38]
Chr4:102020899 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.312C>T (p.Val104=) single nucleotide variant not provided [RCV002219703] Chr4:101109026 [GRCh38]
Chr4:102030183 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.483A>G (p.Thr161=) single nucleotide variant not provided [RCV002160517] Chr4:101099624 [GRCh38]
Chr4:102020781 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.981T>C (p.Asn327=) single nucleotide variant not provided [RCV002153902] Chr4:101063332 [GRCh38]
Chr4:101984489 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1156+20G>T single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002500048]|not provided [RCV002118137] Chr4:101061067 [GRCh38]
Chr4:101982224 [GRCh37]
Chr4:4q24
benign|likely benign
NM_000944.5(PPP3CA):c.260-7C>G single nucleotide variant not provided [RCV002178019] Chr4:101109085 [GRCh38]
Chr4:102030242 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.955+7G>A single nucleotide variant not provided [RCV002162597] Chr4:101080525 [GRCh38]
Chr4:102001682 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1370-8C>T single nucleotide variant not provided [RCV002158808] Chr4:101026069 [GRCh38]
Chr4:101947226 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1389A>G (p.Pro463=) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002494471]|not provided [RCV002163220] Chr4:101026042 [GRCh38]
Chr4:101947199 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1452G>A (p.Pro484=) single nucleotide variant not provided [RCV002157668] Chr4:101025979 [GRCh38]
Chr4:101947136 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.9G>T (p.Glu3Asp) single nucleotide variant not provided [RCV003115885] Chr4:101346788 [GRCh38]
Chr4:102267945 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.836G>A (p.Arg279Gln) single nucleotide variant not specified [RCV002271842] Chr4:101083210 [GRCh38]
Chr4:102004367 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.762G>T (p.Arg254Ser) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002250262] Chr4:101093796 [GRCh38]
Chr4:102014953 [GRCh37]
Chr4:4q24
pathogenic
NM_000944.5(PPP3CA):c.1366G>T (p.Glu456Ter) single nucleotide variant See cases [RCV002252531]|not provided [RCV003101389] Chr4:101029169 [GRCh38]
Chr4:101950326 [GRCh37]
Chr4:4q24
pathogenic|likely pathogenic
NM_000944.5(PPP3CA):c.721A>C (p.Asn241His) single nucleotide variant See cases [RCV002253123] Chr4:101093837 [GRCh38]
Chr4:102014994 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.760del (p.Arg254fs) deletion Seizure [RCV002275916] Chr4:101093798 [GRCh38]
Chr4:102014955 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.700G>C (p.Asp234His) single nucleotide variant not provided [RCV002263352] Chr4:101093858 [GRCh38]
Chr4:102015015 [GRCh37]
Chr4:4q24
likely pathogenic|conflicting interpretations of pathogenicity|uncertain significance
NM_000944.5(PPP3CA):c.*7C>A single nucleotide variant not provided [RCV002263351] Chr4:101025858 [GRCh38]
Chr4:101947015 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.530C>G (p.Ala177Gly) single nucleotide variant Epileptic encephalopathy, infantile or early childhood, 1 [RCV002262172] Chr4:101098479 [GRCh38]
Chr4:102019636 [GRCh37]
Chr4:4q24
likely pathogenic
NM_000944.5(PPP3CA):c.521T>C (p.Val174Ala) single nucleotide variant not provided [RCV002283114] Chr4:101098488 [GRCh38]
Chr4:102019645 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.755C>G (p.Thr252Arg) single nucleotide variant not provided [RCV002293790] Chr4:101093803 [GRCh38]
Chr4:102014960 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1070T>C (p.Val357Ala) single nucleotide variant not provided [RCV002297641] Chr4:101063243 [GRCh38]
Chr4:101984400 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1427T>C (p.Leu476Ser) single nucleotide variant Arthrogryposis, cleft palate, craniosynostosis, and impaired intellectual development [RCV002284031] Chr4:101026004 [GRCh38]
Chr4:101947161 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1094T>C (p.Leu365Pro) single nucleotide variant not provided [RCV002474189] Chr4:101061149 [GRCh38]
Chr4:101982306 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1560T>G (p.Ile520Met) single nucleotide variant not provided [RCV002303815] Chr4:101025871 [GRCh38]
Chr4:101947028 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1168_1169delinsTT (p.Ala390Leu) indel not provided [RCV002305249] Chr4:101040554..101040555 [GRCh38]
Chr4:101961711..101961712 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1301G>C (p.Ser434Thr) single nucleotide variant not provided [RCV002305380] Chr4:101032305 [GRCh38]
Chr4:101953462 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.796T>A (p.Cys266Ser) single nucleotide variant not provided [RCV002299884] Chr4:101083250 [GRCh38]
Chr4:102004407 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1352C>T (p.Ala451Val) single nucleotide variant not provided [RCV002295245] Chr4:101029183 [GRCh38]
Chr4:101950340 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.147T>A (p.His49Gln) single nucleotide variant not provided [RCV002298170] Chr4:101196028 [GRCh38]
Chr4:102117185 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1005C>G (p.Asn335Lys) single nucleotide variant not provided [RCV002462520] Chr4:101063308 [GRCh38]
Chr4:101984465 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1242-17C>A single nucleotide variant not provided [RCV002613690] Chr4:101032381 [GRCh38]
Chr4:101953538 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.25C>A (p.Pro9Thr) single nucleotide variant not provided [RCV002751235] Chr4:101346772 [GRCh38]
Chr4:102267929 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1241+7G>A single nucleotide variant not provided [RCV002754972] Chr4:101040475 [GRCh38]
Chr4:101961632 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.643-6dup duplication not provided [RCV002727150] Chr4:101093920..101093921 [GRCh38]
Chr4:102015077..102015078 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.1185G>A (p.Val395_Ile396=) single nucleotide variant not provided [RCV002861383] Chr4:101040538 [GRCh38]
Chr4:101961695 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.912A>G (p.Thr304_Ile305=) single nucleotide variant not provided [RCV002971912] Chr4:101080575 [GRCh38]
Chr4:102001732 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.495A>G (p.Glu165_Cys166=) single nucleotide variant not provided [RCV002820130] Chr4:101099612 [GRCh38]
Chr4:102020769 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.886A>T (p.Thr296Ser) single nucleotide variant not provided [RCV002636066] Chr4:101080601 [GRCh38]
Chr4:102001758 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1525G>A (p.Gly509Ser) single nucleotide variant not provided [RCV002616108] Chr4:101025906 [GRCh38]
Chr4:101947063 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.385-12del deletion not provided [RCV002842383] Chr4:101099734 [GRCh38]
Chr4:102020891 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.1134G>A (p.Gly378_Ser379=) single nucleotide variant not provided [RCV002837789] Chr4:101061109 [GRCh38]
Chr4:101982266 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.945C>T (p.Tyr315_Asn316=) single nucleotide variant not provided [RCV002690241] Chr4:101080542 [GRCh38]
Chr4:102001699 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.385-13T>G single nucleotide variant not provided [RCV002727151] Chr4:101099735 [GRCh38]
Chr4:102020892 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.933C>T (p.Tyr311_Leu312=) single nucleotide variant not provided [RCV002995006] Chr4:101080554 [GRCh38]
Chr4:102001711 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.58+8G>A single nucleotide variant not provided [RCV002947667] Chr4:101346731 [GRCh38]
Chr4:102267888 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.433T>C (p.Phe145Leu) single nucleotide variant not provided [RCV003016530] Chr4:101099674 [GRCh38]
Chr4:102020831 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1157-14G>A single nucleotide variant not provided [RCV002771333] Chr4:101040580 [GRCh38]
Chr4:101961737 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.678T>C (p.Pro226_Met227=) single nucleotide variant not provided [RCV002837777] Chr4:101093880 [GRCh38]
Chr4:102015037 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.559C>T (p.Leu187_Ala188=) single nucleotide variant not provided [RCV002639252] Chr4:101098450 [GRCh38]
Chr4:102019607 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1242-14_1242-12del deletion not provided [RCV002889149] Chr4:101032376..101032378 [GRCh38]
Chr4:101953533..101953535 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1497C>T (p.Ile499_Asn500=) single nucleotide variant not provided [RCV002760162] Chr4:101025934 [GRCh38]
Chr4:101947091 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.18A>C (p.Ala6_Ile7=) single nucleotide variant not provided [RCV002953812] Chr4:101346779 [GRCh38]
Chr4:102267936 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1509C>T (p.Leu503_Thr504=) single nucleotide variant not provided [RCV002592802] Chr4:101025922 [GRCh38]
Chr4:101947079 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.117A>T (p.Gly39_Lys40=) single nucleotide variant not provided [RCV002623105] Chr4:101196058 [GRCh38]
Chr4:102117215 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1527C>T (p.Gly509_Thr510=) single nucleotide variant not provided [RCV003054161] Chr4:101025904 [GRCh38]
Chr4:101947061 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.405C>T (p.Ala135_Leu136=) single nucleotide variant not provided [RCV003038058] Chr4:101099702 [GRCh38]
Chr4:102020859 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.59-15C>A single nucleotide variant not provided [RCV003055785] Chr4:101196131 [GRCh38]
Chr4:102117288 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1157-20A>G single nucleotide variant not provided [RCV003022122] Chr4:101040586 [GRCh38]
Chr4:101961743 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.856G>T (p.Ala286Ser) single nucleotide variant not provided [RCV003055620] Chr4:101083190 [GRCh38]
Chr4:102004347 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.211A>G (p.Ile71Val) single nucleotide variant not provided [RCV002999641] Chr4:101195964 [GRCh38]
Chr4:102117121 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1532_1540dup (p.Asn513_Gly514insAspSerAsn) duplication not provided [RCV003038121] Chr4:101025890..101025891 [GRCh38]
Chr4:101947047..101947048 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.676C>T (p.Pro226Ser) single nucleotide variant not provided [RCV003017839] Chr4:101093882 [GRCh38]
Chr4:102015039 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1369+18C>G single nucleotide variant not provided [RCV002695761] Chr4:101029148 [GRCh38]
Chr4:101950305 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.853G>C (p.Asp285His) single nucleotide variant not provided [RCV003036730] Chr4:101083193 [GRCh38]
Chr4:102004350 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.41C>T (p.Thr14Ile) single nucleotide variant not provided [RCV002760213] Chr4:101346756 [GRCh38]
Chr4:102267913 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1239C>T (p.Leu413_Arg414=) single nucleotide variant not provided [RCV002639187] Chr4:101040484 [GRCh38]
Chr4:101961641 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1225G>A (p.Val409Met) single nucleotide variant not provided [RCV003054995] Chr4:101040498 [GRCh38]
Chr4:101961655 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.220C>G (p.Gln74Glu) single nucleotide variant not provided [RCV003055007] Chr4:101195955 [GRCh38]
Chr4:102117112 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1366G>A (p.Glu456Lys) single nucleotide variant not provided [RCV002999141] Chr4:101029169 [GRCh38]
Chr4:101950326 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.955+12T>A single nucleotide variant not provided [RCV002760405] Chr4:101080520 [GRCh38]
Chr4:102001677 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.384+17T>G single nucleotide variant not provided [RCV002690887] Chr4:101108937 [GRCh38]
Chr4:102030094 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.83G>A (p.Arg28Gln) single nucleotide variant not provided [RCV002795737] Chr4:101196092 [GRCh38]
Chr4:102117249 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1242-13T>G single nucleotide variant Inborn genetic diseases [RCV002692132] Chr4:101032377 [GRCh38]
Chr4:101953534 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.813C>A (p.His271Gln) single nucleotide variant not provided [RCV002706367] Chr4:101083233 [GRCh38]
Chr4:102004390 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.783-15_783-12del deletion not provided [RCV003054955] Chr4:101083275..101083278 [GRCh38]
Chr4:102004432..102004435 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1266G>A (p.Thr422_Leu423=) single nucleotide variant not provided [RCV002645621] Chr4:101032340 [GRCh38]
Chr4:101953497 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.267G>C (p.Gly89_Asp90=) single nucleotide variant not provided [RCV003025046] Chr4:101109071 [GRCh38]
Chr4:102030228 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1206A>G (p.Ala402_Ile403=) single nucleotide variant not provided [RCV002895043] Chr4:101040517 [GRCh38]
Chr4:101961674 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.956-13del deletion not provided [RCV003007930] Chr4:101063370 [GRCh38]
Chr4:101984527 [GRCh37]
Chr4:4q24
benign
NM_000944.5(PPP3CA):c.201G>C (p.Glu67Asp) single nucleotide variant not provided [RCV002918202] Chr4:101195974 [GRCh38]
Chr4:102117131 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1528A>T (p.Thr510Ser) single nucleotide variant not provided [RCV003057086] Chr4:101025903 [GRCh38]
Chr4:101947060 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1224A>G (p.Arg408_Val409=) single nucleotide variant not provided [RCV002700458] Chr4:101040499 [GRCh38]
Chr4:101961656 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.643-11A>C single nucleotide variant not provided [RCV003023085] Chr4:101093926 [GRCh38]
Chr4:102015083 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1007G>C (p.Cys336Ser) single nucleotide variant not provided [RCV003040822] Chr4:101063306 [GRCh38]
Chr4:101984463 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1107C>T (p.Leu369_Asn370=) single nucleotide variant not provided [RCV002894520] Chr4:101061136 [GRCh38]
Chr4:101982293 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.123T>G (p.Pro41_Arg42=) single nucleotide variant not provided [RCV003042250] Chr4:101196052 [GRCh38]
Chr4:102117209 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.183A>G (p.Ala61_Leu62=) single nucleotide variant not provided [RCV002711958] Chr4:101195992 [GRCh38]
Chr4:102117149 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1248G>A (p.Glu416_Ser417=) single nucleotide variant not provided [RCV002876579] Chr4:101032358 [GRCh38]
Chr4:101953515 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.36G>C (p.Ser12_Thr13=) single nucleotide variant not provided [RCV002982356] Chr4:101346761 [GRCh38]
Chr4:102267918 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.497-16T>G single nucleotide variant not provided [RCV003041100] Chr4:101098528 [GRCh38]
Chr4:102019685 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.267G>T (p.Gly89_Asp90=) single nucleotide variant not provided [RCV002791135] Chr4:101109071 [GRCh38]
Chr4:102030228 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.682T>A (p.Cys228Ser) single nucleotide variant not provided [RCV003007447] Chr4:101093876 [GRCh38]
Chr4:102015033 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.5C>G (p.Ser2Cys) single nucleotide variant not provided [RCV002700101] Chr4:101346792 [GRCh38]
Chr4:102267949 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.121C>A (p.Pro41Thr) single nucleotide variant not provided [RCV002663228] Chr4:101196054 [GRCh38]
Chr4:102117211 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.513A>G (p.Ser171_Glu172=) single nucleotide variant not provided [RCV002626450] Chr4:101098496 [GRCh38]
Chr4:102019653 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.543C>T (p.Ala181_Phe182=) single nucleotide variant not provided [RCV002632610] Chr4:101098466 [GRCh38]
Chr4:102019623 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1369+17C>T single nucleotide variant not provided [RCV003049263] Chr4:101029149 [GRCh38]
Chr4:101950306 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.964T>C (p.Leu322_Lys323=) single nucleotide variant not provided [RCV003030724] Chr4:101063349 [GRCh38]
Chr4:101984506 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1116C>T (p.Cys372_Ser373=) single nucleotide variant not provided [RCV002967116] Chr4:101061127 [GRCh38]
Chr4:101982284 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1191G>A (p.Arg397_Asn398=) single nucleotide variant not provided [RCV003047677] Chr4:101040532 [GRCh38]
Chr4:101961689 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.12C>T (p.Pro4_Lys5=) single nucleotide variant not provided [RCV002581330] Chr4:101346785 [GRCh38]
Chr4:102267942 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1082-15G>A single nucleotide variant not provided [RCV002646799] Chr4:101061176 [GRCh38]
Chr4:101982333 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.496+11T>G single nucleotide variant not provided [RCV002675850] Chr4:101099600 [GRCh38]
Chr4:102020757 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.147T>C (p.His49_Leu50=) single nucleotide variant not provided [RCV002645953] Chr4:101196028 [GRCh38]
Chr4:102117185 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1397A>C (p.Lys466Thr) single nucleotide variant not provided [RCV002938070] Chr4:101026034 [GRCh38]
Chr4:101947191 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1410C>G (p.Phe470Leu) single nucleotide variant Inborn genetic diseases [RCV002793251] Chr4:101026021 [GRCh38]
Chr4:101947178 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.754A>G (p.Thr252Ala) single nucleotide variant not provided [RCV002937904] Chr4:101093804 [GRCh38]
Chr4:102014961 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1490A>T (p.Asn497Ile) single nucleotide variant not provided [RCV002600370] Chr4:101025941 [GRCh38]
Chr4:101947098 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.860+8G>A single nucleotide variant not provided [RCV002833420] Chr4:101083178 [GRCh38]
Chr4:102004335 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1241+19T>C single nucleotide variant not provided [RCV002631498] Chr4:101040463 [GRCh38]
Chr4:101961620 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1563G>A (p.Gln521_Ter522=) single nucleotide variant not provided [RCV002717004] Chr4:101025868 [GRCh38]
Chr4:101947025 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1365T>C (p.Asp455_Glu456=) single nucleotide variant not provided [RCV003062723] Chr4:101029170 [GRCh38]
Chr4:101950327 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.706C>T (p.Leu236_Glu237=) single nucleotide variant not provided [RCV002672009] Chr4:101093852 [GRCh38]
Chr4:102015009 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.618T>A (p.Ile206_Asn207=) single nucleotide variant not provided [RCV002720996] Chr4:101098391 [GRCh38]
Chr4:102019548 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.496+9A>G single nucleotide variant not provided [RCV002857130] Chr4:101099602 [GRCh38]
Chr4:102020759 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.667G>C (p.Ala223Pro) single nucleotide variant not provided [RCV003028843] Chr4:101093891 [GRCh38]
Chr4:102015048 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1101T>C (p.Asn367_Val368=) single nucleotide variant not provided [RCV002630941] Chr4:101061142 [GRCh38]
Chr4:101982299 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.1484A>G (p.Asn495Ser) single nucleotide variant not provided [RCV002584257] Chr4:101025947 [GRCh38]
Chr4:101947104 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.259+17G>T single nucleotide variant not provided [RCV002944324] Chr4:101195899 [GRCh38]
Chr4:102117056 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.623C>T (p.Thr208Ile) single nucleotide variant not provided [RCV002586849] Chr4:101098386 [GRCh38]
Chr4:102019543 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1082-3T>C single nucleotide variant not provided [RCV002589503] Chr4:101061164 [GRCh38]
Chr4:101982321 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.1157-13_1157-10del deletion not provided [RCV002588259] Chr4:101040576..101040579 [GRCh38]
Chr4:101961733..101961736 [GRCh37]
Chr4:4q24
likely benign
NM_000944.5(PPP3CA):c.142G>T (p.Ala48Ser) single nucleotide variant not provided [RCV002944137] Chr4:101196033 [GRCh38]
Chr4:102117190 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.106G>A (p.Asp36Asn) single nucleotide variant not provided [RCV002606694] Chr4:101196069 [GRCh38]
Chr4:102117226 [GRCh37]
Chr4:4q24
uncertain significance
NM_000944.5(PPP3CA):c.789G>A (p.Pro263_Ala264=) single nucleotide variant not provided [RCV002612772] Chr4:101083257 [GRCh38]
Chr4:102004414 [GRCh37]
Chr4:4q24
likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4120
Count of miRNA genes:928
Interacting mature miRNAs:1115
Transcripts:ENST00000323055, ENST00000394853, ENST00000394854, ENST00000492351, ENST00000507176, ENST00000510292, ENST00000512215, ENST00000523694, ENST00000525819, ENST00000529324
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D4S1591  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374102,213,209 - 102,213,328UniSTSGRCh37
Build 364102,432,232 - 102,432,351RGDNCBI36
Celera499,512,447 - 99,512,560RGD
Cytogenetic Map4q24UniSTS
HuRef497,951,258 - 97,951,369UniSTS
Marshfield Genetic Map4106.89RGD
Marshfield Genetic Map4106.89UniSTS
Genethon Genetic Map4105.2UniSTS
Whitehead-YAC Contig Map4 UniSTS
WI-18296  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,952,737 - 101,952,837UniSTSGRCh37
Build 364102,171,760 - 102,171,860RGDNCBI36
Celera499,249,977 - 99,250,077RGD
Cytogenetic Map4q24UniSTS
HuRef497,690,904 - 97,691,004UniSTS
GeneMap99-GB4 RH Map4489.17UniSTS
Whitehead-RH Map4527.3UniSTS
SHGC-50332  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374102,227,176 - 102,227,342UniSTSGRCh37
Build 364102,446,199 - 102,446,365RGDNCBI36
Celera499,526,385 - 99,526,551RGD
Cytogenetic Map4q23UniSTS
Cytogenetic Map4q24UniSTS
HuRef497,965,220 - 97,965,386UniSTS
TNG Radiation Hybrid Map463163.0UniSTS
SHGC-19097  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374102,227,176 - 102,227,323UniSTSGRCh37
Build 364102,446,199 - 102,446,346RGDNCBI36
Celera499,526,385 - 99,526,532RGD
Cytogenetic Map4q23UniSTS
Cytogenetic Map4q24UniSTS
HuRef497,965,220 - 97,965,367UniSTS
RH98934  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374102,269,716 - 102,269,858UniSTSGRCh37
Build 364102,488,739 - 102,488,881RGDNCBI36
Celera499,568,914 - 99,569,056RGD
Cytogenetic Map4q24UniSTS
HuRef498,007,682 - 98,007,824UniSTS
GeneMap99-GB4 RH Map4494.25UniSTS
RH25535  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,944,746 - 101,944,860UniSTSGRCh37
Build 364102,163,769 - 102,163,883RGDNCBI36
Celera499,241,992 - 99,242,106RGD
Cytogenetic Map4q24UniSTS
HuRef497,682,923 - 97,683,037UniSTS
G42352  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374102,077,868 - 102,078,143UniSTSGRCh37
Build 364102,296,891 - 102,297,166RGDNCBI36
Celera499,375,507 - 99,375,782RGD
Cytogenetic Map4q24UniSTS
HuRef497,816,071 - 97,816,346UniSTS
J05479  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,946,792 - 101,946,942UniSTSGRCh37
Build 364102,165,815 - 102,165,965RGDNCBI36
Celera499,244,038 - 99,244,188RGD
HuRef497,684,970 - 97,685,120UniSTS
G59661  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,979,397 - 101,979,539UniSTSGRCh37
Build 364102,198,420 - 102,198,562RGDNCBI36
Celera499,276,638 - 99,276,780RGD
Cytogenetic Map4q24UniSTS
HuRef497,717,564 - 97,717,706UniSTS
TNG Radiation Hybrid Map463409.0UniSTS
G62618  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,958,892 - 101,959,194UniSTSGRCh37
Build 364102,177,915 - 102,178,217RGDNCBI36
Celera499,256,129 - 99,256,431RGD
Cytogenetic Map4q24UniSTS
HuRef497,697,056 - 97,697,358UniSTS
TNG Radiation Hybrid Map463441.0UniSTS
G62859  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374102,147,495 - 102,147,807UniSTSGRCh37
Build 364102,366,518 - 102,366,830RGDNCBI36
Celera499,446,772 - 99,447,084RGD
Cytogenetic Map4q24UniSTS
HuRef497,885,584 - 97,885,896UniSTS
TNG Radiation Hybrid Map463260.0UniSTS
G66787  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374102,166,005 - 102,166,326UniSTSGRCh37
Build 364102,385,028 - 102,385,349RGDNCBI36
Celera499,465,276 - 99,465,597RGD
Cytogenetic Map4q24UniSTS
HuRef497,904,084 - 97,904,405UniSTS
SHGC-106093  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374102,108,703 - 102,108,986UniSTSGRCh37
Build 364102,327,726 - 102,328,009RGDNCBI36
Celera499,406,893 - 99,407,176RGD
Cytogenetic Map4q24UniSTS
HuRef497,846,907 - 97,847,190UniSTS
TNG Radiation Hybrid Map463274.0UniSTS
SHGC-106455  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,981,590 - 101,981,884UniSTSGRCh37
Build 364102,200,613 - 102,200,907RGDNCBI36
Celera499,278,831 - 99,279,125RGD
Cytogenetic Map4q24UniSTS
HuRef497,719,757 - 97,720,051UniSTS
TNG Radiation Hybrid Map463309.0UniSTS
SHGC-142728  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374102,147,495 - 102,147,813UniSTSGRCh37
Build 364102,366,518 - 102,366,836RGDNCBI36
Celera499,446,772 - 99,447,090RGD
Cytogenetic Map4q24UniSTS
HuRef497,885,584 - 97,885,902UniSTS
TNG Radiation Hybrid Map463277.0UniSTS
STS-N27154  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374102,269,858 - 102,269,994UniSTSGRCh37
Build 364102,488,881 - 102,489,017RGDNCBI36
Celera499,569,056 - 99,569,192RGD
Cytogenetic Map4q24UniSTS
HuRef498,007,824 - 98,007,960UniSTS
GeneMap99-GB4 RH Map4492.11UniSTS
NCBI RH Map41162.4UniSTS
SHGC-67255  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,946,872 - 101,946,976UniSTSGRCh37
Build 364102,165,895 - 102,165,999RGDNCBI36
Celera499,244,118 - 99,244,222RGD
Cytogenetic Map4q24UniSTS
HuRef497,685,050 - 97,685,154UniSTS
GeneMap99-GB4 RH Map4496.83UniSTS
SHGC-67693  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,944,618 - 101,944,805UniSTSGRCh37
Build 364102,163,641 - 102,163,828RGDNCBI36
Celera499,241,864 - 99,242,051RGD
Cytogenetic Map4q24UniSTS
HuRef497,682,795 - 97,682,982UniSTS
GeneMap99-GB4 RH Map4494.02UniSTS
WI-20975  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,944,618 - 101,944,872UniSTSGRCh37
Build 364102,163,641 - 102,163,895RGDNCBI36
Celera499,241,864 - 99,242,118RGD
Cytogenetic Map4q24UniSTS
HuRef497,682,795 - 97,683,049UniSTS
GeneMap99-GB4 RH Map4494.02UniSTS
Whitehead-RH Map4534.0UniSTS
WI-18743  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,946,818 - 101,946,953UniSTSGRCh37
Build 364102,165,841 - 102,165,976RGDNCBI36
Celera499,244,064 - 99,244,199RGD
Cytogenetic Map4q24UniSTS
HuRef497,684,996 - 97,685,131UniSTS
GeneMap99-GB4 RH Map4494.02UniSTS
Whitehead-RH Map4534.0UniSTS
SHGC4-996  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374102,213,209 - 102,213,350UniSTSGRCh37
Build 364102,432,232 - 102,432,373RGDNCBI36
Celera499,512,447 - 99,512,582RGD
Cytogenetic Map4q24UniSTS
HuRef497,951,258 - 97,951,391UniSTS
TNG Radiation Hybrid Map463147.0UniSTS
GeneMap99-G3 RH Map45632.0UniSTS
RH66646  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374102,167,985 - 102,168,104UniSTSGRCh37
Build 364102,387,008 - 102,387,127RGDNCBI36
Celera499,467,256 - 99,467,375RGD
Cytogenetic Map4q24UniSTS
HuRef497,906,064 - 97,906,183UniSTS
GeneMap99-GB4 RH Map4494.53UniSTS
NCBI RH Map41106.8UniSTS
WI-16419  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,946,168 - 101,946,267UniSTSGRCh37
Build 364102,165,191 - 102,165,290RGDNCBI36
Celera499,243,414 - 99,243,513RGD
Cytogenetic Map4q24UniSTS
HuRef497,684,345 - 97,684,444UniSTS
GeneMap99-GB4 RH Map4494.64UniSTS
Whitehead-RH Map4527.2UniSTS
NCBI RH Map41105.5UniSTS
SHGC-67753  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374102,178,576 - 102,178,764UniSTSGRCh37
Build 364102,397,599 - 102,397,787RGDNCBI36
Celera499,477,846 - 99,478,034RGD
Cytogenetic Map4q24UniSTS
HuRef497,916,654 - 97,916,842UniSTS
GeneMap99-GB4 RH Map4494.25UniSTS
NCBI RH Map41163.1UniSTS
EST26A4-T  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,946,137 - 101,946,216UniSTSGRCh37
Build 364102,165,160 - 102,165,239RGDNCBI36
Celera499,243,383 - 99,243,462RGD
HuRef497,684,314 - 97,684,393UniSTS
PPP3CA  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,946,593 - 101,946,944UniSTSGRCh37
GRCh374102,014,947 - 102,015,057UniSTSGRCh37
Celera499,312,188 - 99,312,298UniSTS
Celera499,243,839 - 99,244,190UniSTS
HuRef497,684,771 - 97,685,122UniSTS
HuRef497,753,114 - 97,753,224UniSTS
PPP3CA  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,946,593 - 101,946,944UniSTSGRCh37
GRCh374102,014,947 - 102,015,057UniSTSGRCh37
Celera499,312,188 - 99,312,298UniSTS
Celera499,243,839 - 99,244,190UniSTS
HuRef497,684,771 - 97,685,122UniSTS
HuRef497,753,114 - 97,753,224UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2099 1858 1316 272 1489 116 4258 1604 3532 294 1264 1589 168 1199 2701 3
Low 336 1129 409 352 460 348 98 592 200 124 190 22 7 1 5 87 1 2
Below cutoff 2 1 1 2 1 2 1 6 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_000944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001130691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001130692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024454127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB451338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB451487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC092671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL353950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW973358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY904364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU192652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU192653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J05480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC876894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L14778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC369129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000323055   ⟹   ENSP00000320580
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl4101,023,431 - 101,347,471 (-)Ensembl
RefSeq Acc Id: ENST00000394853   ⟹   ENSP00000378322
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl4101,024,328 - 101,347,327 (-)Ensembl
RefSeq Acc Id: ENST00000394854   ⟹   ENSP00000378323
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl4101,023,418 - 101,347,526 (-)Ensembl
RefSeq Acc Id: ENST00000492351   ⟹   ENSP00000426565
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl4101,083,195 - 101,195,928 (-)Ensembl
RefSeq Acc Id: ENST00000507176   ⟹   ENSP00000422990
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl4101,025,318 - 101,346,842 (-)Ensembl
RefSeq Acc Id: ENST00000510292
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl4101,093,868 - 101,158,319 (-)Ensembl
RefSeq Acc Id: ENST00000512215   ⟹   ENSP00000422781
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl4101,023,409 - 101,347,477 (-)Ensembl
RefSeq Acc Id: ENST00000525819   ⟹   ENSP00000434599
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl4101,098,463 - 101,347,560 (-)Ensembl
RefSeq Acc Id: ENST00000529324   ⟹   ENSP00000431619
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl4101,098,418 - 101,348,278 (-)Ensembl
RefSeq Acc Id: NM_000944   ⟹   NP_000935
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384101,023,418 - 101,347,526 (-)NCBI
GRCh374101,944,587 - 102,268,655 (-)NCBI
Build 364102,163,610 - 102,487,376 (-)NCBI Archive
HuRef497,682,764 - 98,006,594 (-)ENTREZGENE
CHM1_14101,921,069 - 102,245,098 (-)NCBI
T2T-CHM13v2.04104,338,695 - 104,662,217 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001130691   ⟹   NP_001124163
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384101,023,418 - 101,347,526 (-)NCBI
GRCh374101,944,587 - 102,268,655 (-)NCBI
HuRef497,682,764 - 98,006,594 (-)ENTREZGENE
CHM1_14101,921,069 - 102,245,098 (-)NCBI
T2T-CHM13v2.04104,338,695 - 104,662,217 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001130692   ⟹   NP_001124164
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384101,023,418 - 101,347,526 (-)NCBI
GRCh374101,944,587 - 102,268,655 (-)NCBI
HuRef497,682,764 - 98,006,594 (-)ENTREZGENE
CHM1_14101,921,069 - 102,245,098 (-)NCBI
T2T-CHM13v2.04104,338,695 - 104,662,217 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001124164   ⟸   NM_001130692
- Peptide Label: isoform 3
- UniProtKB: Q08209 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001124163   ⟸   NM_001130691
- Peptide Label: isoform 2
- UniProtKB: Q08209 (UniProtKB/Swiss-Prot),   A0A0S2Z4B5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_000935   ⟸   NM_000944
- Peptide Label: isoform 1
- UniProtKB: Q8TAW9 (UniProtKB/Swiss-Prot),   Q08209 (UniProtKB/Swiss-Prot),   A0A0S2Z4C6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000426565   ⟸   ENST00000492351
RefSeq Acc Id: ENSP00000422990   ⟸   ENST00000507176
RefSeq Acc Id: ENSP00000320580   ⟸   ENST00000323055
RefSeq Acc Id: ENSP00000434599   ⟸   ENST00000525819
RefSeq Acc Id: ENSP00000378322   ⟸   ENST00000394853
RefSeq Acc Id: ENSP00000378323   ⟸   ENST00000394854
RefSeq Acc Id: ENSP00000422781   ⟸   ENST00000512215
RefSeq Acc Id: ENSP00000431619   ⟸   ENST00000529324
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q08209-F1-model_v2 AlphaFold Q08209 1-521 view protein structure

Promoters
RGD ID:6868134
Promoter ID:EPDNEW_H7232
Type:initiation region
Name:PPP3CA_2
Description:protein phosphatase 3 catalytic subunit alpha
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7233  EPDNEW_H7234  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh384101,346,937 - 101,346,997EPDNEW
RGD ID:6868136
Promoter ID:EPDNEW_H7233
Type:initiation region
Name:PPP3CA_3
Description:protein phosphatase 3 catalytic subunit alpha
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7232  EPDNEW_H7234  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh384101,347,180 - 101,347,240EPDNEW
RGD ID:6868138
Promoter ID:EPDNEW_H7234
Type:initiation region
Name:PPP3CA_1
Description:protein phosphatase 3 catalytic subunit alpha
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7232  EPDNEW_H7233  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh384101,347,500 - 101,347,560EPDNEW
RGD ID:6802578
Promoter ID:HG_KWN:48813
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001130691,   NM_001130692,   OTTHUMT00000258379,   UC003HVS.1,   UC003HVT.1,   UC003HVV.1,   UC003HVW.2,   UC010ILK.1
Position:
Human AssemblyChrPosition (strand)Source
Build 364102,486,191 - 102,488,452 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:9314 AgrOrtholog
COSMIC PPP3CA COSMIC
Ensembl Genes ENSG00000138814 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000320580 ENTREZGENE
  ENSP00000320580.6 UniProtKB/Swiss-Prot
  ENSP00000378322 ENTREZGENE
  ENSP00000378322.4 UniProtKB/Swiss-Prot
  ENSP00000378323 ENTREZGENE
  ENSP00000378323.3 UniProtKB/Swiss-Prot
  ENSP00000422781.1 UniProtKB/Swiss-Prot
  ENSP00000422990.1 UniProtKB/TrEMBL
  ENSP00000426565.1 UniProtKB/TrEMBL
  ENSP00000431619.1 UniProtKB/TrEMBL
  ENSP00000434599.1 UniProtKB/TrEMBL
Ensembl Transcript ENST00000323055 ENTREZGENE
  ENST00000323055.10 UniProtKB/Swiss-Prot
  ENST00000394853 ENTREZGENE
  ENST00000394853.8 UniProtKB/Swiss-Prot
  ENST00000394854 ENTREZGENE
  ENST00000394854.8 UniProtKB/Swiss-Prot
  ENST00000492351.6 UniProtKB/TrEMBL
  ENST00000507176.5 UniProtKB/TrEMBL
  ENST00000512215.5 UniProtKB/Swiss-Prot
  ENST00000525819.1 UniProtKB/TrEMBL
  ENST00000529324.5 UniProtKB/TrEMBL
Gene3D-CATH 3.60.21.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000138814 GTEx
HGNC ID HGNC:9314 ENTREZGENE
Human Proteome Map PPP3CA Human Proteome Map
InterPro Calcineurin-like_PHP_ApaH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Metallo-depent_PP-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MPP_PP2B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PP2B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Thr-sp_prot-phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:5530 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 5530 ENTREZGENE
OMIM 114105 OMIM
PANTHER PTHR45673 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT ALPHA ISOFORM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Metallophos UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA33678 PharmGKB
PRINTS STPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SER_THR_PHOSPHATASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PP2Ac UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0S2Z4B5 ENTREZGENE, UniProtKB/TrEMBL
  A0A0S2Z4C6 ENTREZGENE, UniProtKB/TrEMBL
  E7ETC2_HUMAN UniProtKB/TrEMBL
  E9PK68_HUMAN UniProtKB/TrEMBL
  E9PPC8_HUMAN UniProtKB/TrEMBL
  H0YAB4_HUMAN UniProtKB/TrEMBL
  PP2BA_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q8TAW9 ENTREZGENE
UniProt Secondary A1A441 UniProtKB/Swiss-Prot
  A8K3B7 UniProtKB/Swiss-Prot
  A8W6Z7 UniProtKB/Swiss-Prot
  A8W6Z8 UniProtKB/Swiss-Prot
  B5BUA2 UniProtKB/Swiss-Prot
  Q8TAW9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-16 PPP3CA  protein phosphatase 3 catalytic subunit alpha    protein phosphatase 3, catalytic subunit, alpha isozyme  Symbol and/or name change 5135510 APPROVED
2011-07-27 PPP3CA  protein phosphatase 3, catalytic subunit, alpha isozyme  PPP3CA  protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform  Symbol and/or name change 5135510 APPROVED