PAX8 (paired box 8) - Rat Genome Database

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Gene: PAX8 (paired box 8) Homo sapiens
Analyze
Symbol: PAX8
Name: paired box 8
RGD ID: 730849
HGNC Page HGNC:8622
Description: Enables DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including kidney development; otic vesicle development; and positive regulation of metabolic process. Located in nucleoplasm. Implicated in congenital hypothyroidism and congenital nongoitrous hypothyroidism 2.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: paired box protein Pax-8; paired domain gene 8; PAX-8
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382113,215,997 - 113,278,921 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2113,215,997 - 113,278,921 (-)EnsemblGRCh38hg38GRCh38
GRCh372113,973,574 - 114,036,498 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362113,690,045 - 113,752,968 (-)NCBINCBI36Build 36hg18NCBI36
Build 342113,691,170 - 113,752,728NCBI
Celera2107,358,161 - 107,421,066 (-)NCBICelera
Cytogenetic Map2q14.1NCBI
HuRef2106,427,614 - 106,522,962 (-)NCBIHuRef
CHM1_12113,977,965 - 114,040,915 (-)NCBICHM1_1
T2T-CHM13v2.02113,642,573 - 113,705,473 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-amphetamine  (ISO)
(S)-nicotine  (EXP,ISO)
1,2-dichloroethane  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (EXP)
acetamide  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
antirheumatic drug  (EXP)
aristolochic acid A  (EXP)
bathocuproine disulfonic acid  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (ISO)
cadmium dichloride  (EXP,ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (ISO)
carmustine  (EXP)
CGP 52608  (EXP)
cisplatin  (EXP)
cocaine  (EXP)
colforsin daropate hydrochloride  (EXP)
corn oil  (ISO)
DDE  (EXP)
decabromodiphenyl ether  (ISO)
diallyl trisulfide  (EXP)
endosulfan  (ISO)
ethylparaben  (EXP)
flavonoids  (ISO)
folic acid  (EXP,ISO)
furan  (ISO)
glyphosate  (ISO)
lead(0)  (EXP)
lipopolysaccharide  (ISO)
mono(2-ethyl-5-hydroxyhexyl) phthalate  (EXP)
mono(2-ethylhexyl) phthalate  (EXP)
nicotine  (EXP,ISO)
paracetamol  (EXP,ISO)
perchlorate  (ISO)
perfluorobutanesulfonic acid  (ISO)
perfluorobutyric acid  (ISO)
perfluorododecanoic acid  (ISO)
perfluorohexanesulfonic acid  (EXP,ISO)
perfluorohexanoic acid  (ISO)
perfluorononanoic acid  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
perfluoroundecanoic acid  (ISO)
potassium iodide  (ISO)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (EXP)
resveratrol  (EXP,ISO)
silicon dioxide  (EXP,ISO)
sirolimus  (EXP)
sodium dichromate  (ISO)
sodium perchlorate  (ISO)
streptozocin  (ISO)
thioacetamide  (ISO)
thiram  (EXP)
trichloroethene  (ISO)
triptonide  (ISO)
urethane  (EXP)
valproic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anatomical structure morphogenesis  (TAS)
branching involved in ureteric bud morphogenesis  (IEP)
cell differentiation  (IEA)
cellular response to gonadotropin stimulus  (IDA)
central nervous system development  (IEA,IEP)
DNA-templated transcription  (IDA)
epithelial cell differentiation  (IEA,ISO)
inner ear morphogenesis  (IEA,ISS)
kidney development  (IEP)
kidney epithelium development  (IEA)
mesenchymal to epithelial transition involved in metanephros morphogenesis  (IEP)
mesonephric tubule development  (IEA)
mesonephros development  (IEA,ISS)
metanephric comma-shaped body morphogenesis  (IEP)
metanephric distal convoluted tubule development  (IEA,ISS)
metanephric epithelium development  (IEP)
metanephric nephron tubule formation  (IEA,ISS)
metanephric S-shaped body morphogenesis  (IEP)
metanephros development  (IEA,ISO)
negative regulation of apoptotic process involved in metanephric collecting duct development  (IEA,ISS)
negative regulation of apoptotic process involved in metanephric nephron tubule development  (IEA,ISS)
negative regulation of cardiac muscle cell apoptotic process  (IEA)
negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis  (IEA,ISS)
negative regulation of mesenchymal cell apoptotic process involved in metanephros development  (IEA,ISS)
nervous system development  (IBA)
otic vesicle development  (IEP)
positive regulation of branching involved in ureteric bud morphogenesis  (IEA,ISS)
positive regulation of DNA-templated transcription  (IDA,IEA,ISS)
positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis  (IEA,ISS)
positive regulation of metanephric DCT cell differentiation  (IEA,ISS)
positive regulation of thyroid hormone generation  (IEA,IMP)
positive regulation of transcription by RNA polymerase II  (IDA,IEA,ISO)
pronephric field specification  (IEA,ISS)
pronephros development  (IEA,ISS)
regulation of apoptotic process  (IEA,ISS)
regulation of DNA-templated transcription  (IEA,ISO)
regulation of metanephric nephron tubule epithelial cell differentiation  (IEA,ISS)
regulation of thyroid-stimulating hormone secretion  (IMP)
regulation of transcription by RNA polymerase II  (IBA)
S-shaped body morphogenesis  (IEA)
sensory organ development  (IBA)
sulfur compound metabolic process  (IEA,ISO)
thyroid gland development  (IEA,IEP,IMP,ISO)
thyroid-stimulating hormone signaling pathway  (IEA)
urogenital system development  (IEA,ISS)
ventricular septum development  (IEA)

Cellular Component
chromatin  (ISA)
nucleoplasm  (IDA,IEA,ISS)
nucleus  (IDA,IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. PAX8 mutations associated with congenital hypothyroidism caused by thyroid dysgenesis. Macchia PE, etal., Nat Genet. 1998 May;19(1):83-6.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
8. Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients. Xiong Y, etal., Emerg Microbes Infect. 2020 Dec;9(1):761-770. doi: 10.1080/22221751.2020.1747363.
Additional References at PubMed
PMID:1337742   PMID:7737192   PMID:7856737   PMID:7981748   PMID:8125298   PMID:8413205   PMID:8431641   PMID:8861958   PMID:8889548   PMID:9388203   PMID:9590297   PMID:10377248  
PMID:10924503   PMID:11134340   PMID:11232006   PMID:11502839   PMID:11923479   PMID:12161538   PMID:12441357   PMID:12477932   PMID:12519876   PMID:12699588   PMID:12727991   PMID:12970322  
PMID:14531730   PMID:14623893   PMID:14702039   PMID:14970209   PMID:15062550   PMID:15355349   PMID:15356023   PMID:15362967   PMID:15489334   PMID:15494458   PMID:15531527   PMID:15718293  
PMID:15961562   PMID:16029487   PMID:16179407   PMID:16219715   PMID:16344560   PMID:16352687   PMID:16613988   PMID:16763387   PMID:16814811   PMID:17064757   PMID:17437516   PMID:17468187  
PMID:17614769   PMID:17980011   PMID:18029348   PMID:18084247   PMID:18632625   PMID:18670350   PMID:18724243   PMID:18768662   PMID:18829450   PMID:18974227   PMID:18976153   PMID:19010321  
PMID:19274049   PMID:19525927   PMID:19730683   PMID:19797117   PMID:19963130   PMID:20157192   PMID:20195357   PMID:20211142   PMID:20302910   PMID:20379614   PMID:20414099   PMID:20463571  
PMID:20470391   PMID:20492080   PMID:20513481   PMID:20572292   PMID:20607683   PMID:20634891   PMID:20667985   PMID:20718765   PMID:20851479   PMID:20857061   PMID:21263247   PMID:21289264  
PMID:21317881   PMID:21328566   PMID:21552115   PMID:21602887   PMID:21606823   PMID:21663937   PMID:21689132   PMID:21763631   PMID:21836478   PMID:21836481   PMID:21838611   PMID:21873635  
PMID:21932072   PMID:21934480   PMID:21979593   PMID:21988832   PMID:21989345   PMID:22037256   PMID:22135028   PMID:22261458   PMID:22293317   PMID:22388755   PMID:22495365   PMID:22644304  
PMID:22666732   PMID:22705448   PMID:22797727   PMID:22807381   PMID:22898500   PMID:22961909   PMID:23163626   PMID:23194047   PMID:23196794   PMID:23202787   PMID:23218904   PMID:23308388  
PMID:23328975   PMID:23436219   PMID:23453625   PMID:23503645   PMID:23550799   PMID:23612030   PMID:23647375   PMID:23738683   PMID:23787439   PMID:23811186   PMID:23958394   PMID:23958552  
PMID:24037217   PMID:24086368   PMID:24225756   PMID:24334997   PMID:24340305   PMID:24602166   PMID:24628993   PMID:24766781   PMID:24798894   PMID:24857336   PMID:24897005   PMID:24901404  
PMID:24992169   PMID:25083965   PMID:25146893   PMID:25153494   PMID:25214233   PMID:25270402   PMID:25279712   PMID:25287489   PMID:25315900   PMID:25433656   PMID:25708358   PMID:25720050  
PMID:25827135   PMID:26030152   PMID:26079312   PMID:26258321   PMID:26282166   PMID:26352548   PMID:26354716   PMID:26362610   PMID:26370671   PMID:26371431   PMID:26404914   PMID:26617871  
PMID:26797858   PMID:26910219   PMID:27129161   PMID:27175788   PMID:27207603   PMID:27225188   PMID:27249794   PMID:27259239   PMID:27362905   PMID:27494321   PMID:27573549   PMID:27761900  
PMID:27797226   PMID:28060725   PMID:28103614   PMID:28248726   PMID:28322461   PMID:28339471   PMID:28367736   PMID:28426529   PMID:28444304   PMID:28473536   PMID:28506732   PMID:28621837  
PMID:28749793   PMID:28777151   PMID:28877056   PMID:29379162   PMID:29629948   PMID:30358609   PMID:30639194   PMID:30648929   PMID:30720110   PMID:30789354   PMID:31050342   PMID:31273314  
PMID:31335489   PMID:31353958   PMID:31391550   PMID:31431624   PMID:31558562   PMID:31932679   PMID:31932920   PMID:32096550   PMID:32296183   PMID:32332753   PMID:32381599   PMID:32383186  
PMID:32430717   PMID:32841355   PMID:32988924   PMID:33002562   PMID:33029631   PMID:33208672   PMID:33361393   PMID:33434492   PMID:33566340   PMID:33794208   PMID:33830648   PMID:33852846  
PMID:33862642   PMID:33903593   PMID:33961781   PMID:34081633   PMID:34102541   PMID:34145460   PMID:34244607   PMID:34290299   PMID:34339032   PMID:35124696   PMID:35140242   PMID:35154515  
PMID:35185017   PMID:35209928   PMID:35380877   PMID:35387670   PMID:35417734   PMID:35676472   PMID:35713353   PMID:35926290   PMID:36281161   PMID:36730878   PMID:36731037   PMID:38272482  
PMID:38677751   PMID:38853202   PMID:38993572  


Genomics

Comparative Map Data
PAX8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382113,215,997 - 113,278,921 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2113,215,997 - 113,278,921 (-)EnsemblGRCh38hg38GRCh38
GRCh372113,973,574 - 114,036,498 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362113,690,045 - 113,752,968 (-)NCBINCBI36Build 36hg18NCBI36
Build 342113,691,170 - 113,752,728NCBI
Celera2107,358,161 - 107,421,066 (-)NCBICelera
Cytogenetic Map2q14.1NCBI
HuRef2106,427,614 - 106,522,962 (-)NCBIHuRef
CHM1_12113,977,965 - 114,040,915 (-)NCBICHM1_1
T2T-CHM13v2.02113,642,573 - 113,705,473 (-)NCBIT2T-CHM13v2.0
Pax8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,310,563 - 24,365,611 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,310,572 - 24,365,611 (-)EnsemblGRCm39 Ensembl
GRCm38224,420,551 - 24,475,599 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl224,420,560 - 24,475,599 (-)EnsemblGRCm38mm10GRCm38
MGSCv37224,276,080 - 24,331,086 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36224,242,569 - 24,297,575 (-)NCBIMGSCv36mm8
Celera224,140,049 - 24,195,191 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map216.43NCBI
Pax8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8327,584,000 - 27,641,094 (-)NCBIGRCr8
mRatBN7.237,185,721 - 7,242,363 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,185,723 - 7,242,363 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx310,289,591 - 10,345,823 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0318,875,838 - 18,932,068 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,065,649 - 17,121,886 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.031,527,316 - 1,586,019 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl31,527,279 - 1,584,946 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.031,520,144 - 1,576,052 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.432,671,478 - 2,726,801 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.132,672,153 - 2,726,345 (-)NCBI
Celera32,022,899 - 2,078,650 (-)NCBICelera
Cytogenetic Map3p13NCBI
Pax8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554701,016,289 - 1,073,796 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554701,016,226 - 1,072,643 (+)NCBIChiLan1.0ChiLan1.0
PAX8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21214,933,395 - 14,971,937 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A14,936,160 - 14,974,705 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A88,845,877 - 88,905,266 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A114,162,110 - 114,222,865 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A114,162,110 - 114,222,865 (-)Ensemblpanpan1.1panPan2
PAX8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11737,307,130 - 37,331,729 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1737,306,033 - 37,363,178 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1737,077,650 - 37,133,660 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01738,084,443 - 38,141,710 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1738,085,541 - 38,141,710 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11737,220,866 - 37,276,852 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01737,277,373 - 37,333,166 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01737,490,112 - 37,546,218 (-)NCBIUU_Cfam_GSD_1.0
Pax8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629282,629,178 - 82,682,663 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367831,523,661 - 1,576,568 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367831,523,658 - 1,553,464 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAX8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11416,236,074 - 16,299,650 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1416,233,378 - 16,297,365 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660803,382,976 - 3,450,250 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pax8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474913,300,606 - 13,357,903 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474913,291,880 - 13,358,066 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PAX8
220 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_003466.4(PAX8):c.165T>G (p.His55Gln) single nucleotide variant not provided [RCV000144426] Chr2:113246780 [GRCh38]
Chr2:114004357 [GRCh37]
Chr2:2q14.1
not provided
NM_003466.4(PAX8):c.1011del (p.Val339fs) deletion Obesity [RCV000735297] Chr2:113235470 [GRCh38]
Chr2:113993047 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1280C>T (p.Ser427Phe) single nucleotide variant Inborn genetic diseases [RCV004649184]|not provided [RCV000521016] Chr2:113218606 [GRCh38]
Chr2:113976183 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.985T>C (p.Phe329Leu) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001133552]|PAX8 POLYMORPHISM [RCV000014792]|PAX8-related disorder [RCV003974824]|not provided [RCV003430637]|not specified [RCV001698942] Chr2:113235496 [GRCh38]
Chr2:113993073 [GRCh37]
Chr2:2q14.1
benign|likely benign
NM_003466.4(PAX8):c.322C>T (p.Arg108Ter) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000014793] Chr2:113244494 [GRCh38]
Chr2:114002071 [GRCh37]
Chr2:2q14.1
pathogenic
NM_003466.4(PAX8):c.92G>A (p.Arg31His) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000014794] Chr2:113246853 [GRCh38]
Chr2:114004430 [GRCh37]
Chr2:2q14.1
pathogenic
NM_003466.4(PAX8):c.185T>G (p.Leu62Arg) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000014795] Chr2:113246760 [GRCh38]
Chr2:114004337 [GRCh37]
Chr2:2q14.1
pathogenic
NM_003466.4(PAX8):c.170G>A (p.Cys57Tyr) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000014796] Chr2:113246775 [GRCh38]
Chr2:114004352 [GRCh37]
Chr2:2q14.1
pathogenic
NM_003466.4(PAX8):c.160A>G (p.Ser54Gly) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000014797] Chr2:113246785 [GRCh38]
Chr2:114004362 [GRCh37]
Chr2:2q14.1
pathogenic
NM_003466.4(PAX8):c.119A>C (p.Gln40Pro) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000014798] Chr2:113246826 [GRCh38]
Chr2:114004403 [GRCh37]
Chr2:2q14.1
pathogenic
NM_003466.4(PAX8):c.143C>T (p.Ser48Phe) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000014799] Chr2:113246802 [GRCh38]
Chr2:114004379 [GRCh37]
Chr2:2q14.1
pathogenic
NM_003466.4(PAX8):c.1227C>G (p.Pro409=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000363223]|not provided [RCV000877696] Chr2:113220141 [GRCh38]
Chr2:113977718 [GRCh37]
Chr2:2q14.1
likely benign|uncertain significance
NM_003466.4(PAX8):c.797T>C (p.Leu266Ser) single nucleotide variant Inborn genetic diseases [RCV002516086]|not provided [RCV000153642] Chr2:113236702 [GRCh38]
Chr2:113994279 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.473C>T (p.Thr158Met) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001130010]|Inborn genetic diseases [RCV002514960]|not provided [RCV000153643] Chr2:113242695 [GRCh38]
Chr2:114000272 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1060C>G (p.Gln354Glu) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000389718]|Inborn genetic diseases [RCV002521266] Chr2:113235421 [GRCh38]
Chr2:113992998 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*1765G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000264304]|not provided [RCV004694464] Chr2:113216768 [GRCh38]
Chr2:113974345 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.898+12G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000274260] Chr2:113236589 [GRCh38]
Chr2:113994166 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.297C>T (p.Asn99=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000285127] Chr2:113244519 [GRCh38]
Chr2:114002096 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1189+15G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000270972]|not provided [RCV001702003]|not specified [RCV001699460] Chr2:113227140 [GRCh38]
Chr2:113984717 [GRCh37]
Chr2:2q14.1
benign|likely benign|conflicting interpretations of pathogenicity|uncertain significance
NM_003466.4(PAX8):c.1275G>A (p.Leu425=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000271640] Chr2:113220093 [GRCh38]
Chr2:113977670 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.479-6C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000372606]|not provided [RCV000873176]|not specified [RCV001699319] Chr2:113242136 [GRCh38]
Chr2:113999713 [GRCh37]
Chr2:2q14.1
benign|uncertain significance
NM_003466.4(PAX8):c.885C>T (p.Tyr295=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000374688]|not provided [RCV000871993] Chr2:113236614 [GRCh38]
Chr2:113994191 [GRCh37]
Chr2:2q14.1
benign|uncertain significance
NM_003466.4(PAX8):c.1267A>G (p.Ser423Gly) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000310810]|not provided [RCV001354423] Chr2:113220101 [GRCh38]
Chr2:113977678 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.501C>A (p.Pro167=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000334334]|not provided [RCV000872927] Chr2:113242108 [GRCh38]
Chr2:113999685 [GRCh37]
Chr2:2q14.1
benign|uncertain significance
GRCh37/hg19 2q12.2-14.1(chr2:106423310-115054828)x1 copy number loss See cases [RCV000240053] Chr2:106423310..115054828 [GRCh37]
Chr2:2q12.2-14.1
pathogenic
NM_003466.4(PAX8):c.129G>A (p.Arg43=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000342663]|not provided [RCV000870944] Chr2:113246816 [GRCh38]
Chr2:114004393 [GRCh37]
Chr2:2q14.1
benign|uncertain significance
NM_003466.4(PAX8):c.898+11C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000331725]|not specified [RCV000250874] Chr2:113236590 [GRCh38]
Chr2:113994167 [GRCh37]
Chr2:2q14.1
likely benign|uncertain significance
GRCh37/hg19 2q12.3-14.3(chr2:109798247-125658380)x1 copy number loss See cases [RCV000240485] Chr2:109798247..125658380 [GRCh37]
Chr2:2q12.3-14.3
pathogenic
NM_003466.4(PAX8):c.*1029G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000272270] Chr2:113217504 [GRCh38]
Chr2:113975081 [GRCh37]
Chr2:2q14.1
uncertain significance
GRCh37/hg19 2q12.3-14.1(chr2:109556627-117570152)x1 copy number loss See cases [RCV000240490] Chr2:109556627..117570152 [GRCh37]
Chr2:2q12.3-14.1
pathogenic
NM_003466.4(PAX8):c.478+16C>T single nucleotide variant not specified [RCV000245939] Chr2:113242674 [GRCh38]
Chr2:114000251 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.*627T>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000299004] Chr2:113217906 [GRCh38]
Chr2:113975483 [GRCh37]
Chr2:2q14.1
likely benign|uncertain significance
NM_003466.4(PAX8):c.*845G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000351958]|not provided [RCV004694465] Chr2:113217688 [GRCh38]
Chr2:113975265 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*2320G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000352159] Chr2:113216213 [GRCh38]
Chr2:113973790 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*703G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000397193] Chr2:113217830 [GRCh38]
Chr2:113975407 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*2033C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000353356] Chr2:113216500 [GRCh38]
Chr2:113974077 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*2146A>G single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000300927]|not provided [RCV004708370] Chr2:113216387 [GRCh38]
Chr2:113216387..113216388 [GRCh38]
Chr2:113973964 [GRCh37]
Chr2:113973964..113973965 [GRCh37]
Chr2:2q14.1
benign|likely benign
NM_003466.4(PAX8):c.*204C>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000302199] Chr2:113218329 [GRCh38]
Chr2:113975906 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*708C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000338694] Chr2:113217825 [GRCh38]
Chr2:113975402 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*187A>G single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000359275]|not provided [RCV001707656] Chr2:113218346 [GRCh38]
Chr2:113975923 [GRCh37]
Chr2:2q14.1
benign|likely benign|uncertain significance
NM_003466.4(PAX8):c.*1000T>C single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000381833]|not provided [RCV004709864] Chr2:113217533 [GRCh38]
Chr2:113975110 [GRCh37]
Chr2:2q14.1
benign|likely benign
NM_003466.4(PAX8):c.*1044A>C single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000383143]|not provided [RCV004708372] Chr2:113217489 [GRCh38]
Chr2:113217489..113217490 [GRCh38]
Chr2:113975066 [GRCh37]
Chr2:113975066..113975067 [GRCh37]
Chr2:2q14.1
benign|likely benign
NM_003466.4(PAX8):c.*1807C>G single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000361249] Chr2:113216726 [GRCh38]
Chr2:113974303 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*1914C>G single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000322907]|not provided [RCV004708371] Chr2:113216619 [GRCh38]
Chr2:113974196 [GRCh37]
Chr2:2q14.1
benign|likely benign
NM_003466.4(PAX8):c.*423C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000342255] Chr2:113218110 [GRCh38]
Chr2:113975687 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*1006A>C single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000324939]|not provided [RCV004708373] Chr2:113217527 [GRCh38]
Chr2:113975104 [GRCh37]
Chr2:2q14.1
benign|likely benign
NM_003466.4(PAX8):c.*2478C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000346185]|not provided [RCV004708368] Chr2:113216055 [GRCh38]
Chr2:113216055..113216056 [GRCh38]
Chr2:113973632 [GRCh37]
Chr2:113973632..113973633 [GRCh37]
Chr2:2q14.1
benign|likely benign
NM_003466.4(PAX8):c.*2193G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000368505] Chr2:113216340 [GRCh38]
Chr2:113973917 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*2309A>G single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000311544]|not provided [RCV004708369] Chr2:113216224 [GRCh38]
Chr2:113973801 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.858G>T (p.Gly286=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000281688] Chr2:113236641 [GRCh38]
Chr2:113994218 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*1977T>C single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000260896] Chr2:113216556 [GRCh38]
Chr2:113974133 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*2503_*2504dup duplication Congenital hypothyroidism [RCV000291288] Chr2:113216028..113216029 [GRCh38]
Chr2:113973605..113973606 [GRCh37]
Chr2:2q14.1
uncertain significance
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 copy number gain not provided [RCV000752802] Chr2:14238..243048760 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
NM_003466.4(PAX8):c.278G>C (p.Gly93Ala) single nucleotide variant not provided [RCV000490149] Chr2:113244538 [GRCh38]
Chr2:114002115 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.136G>A (p.Asp46Asn) single nucleotide variant not provided [RCV002293021] Chr2:113246809 [GRCh38]
Chr2:114004386 [GRCh37]
Chr2:2q14.1
likely pathogenic
NM_003466.4(PAX8):c.*2312G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000398994] Chr2:113216221 [GRCh38]
Chr2:113973798 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*2409C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000399031] Chr2:113216124 [GRCh38]
Chr2:113973701 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*2192C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000400181] Chr2:113216341 [GRCh38]
Chr2:113973918 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*764C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000293563] Chr2:113217769 [GRCh38]
Chr2:113975346 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1185G>A (p.Val395=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000333038] Chr2:113227159 [GRCh38]
Chr2:113984736 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*789G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000385422] Chr2:113217744 [GRCh38]
Chr2:113975321 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*938C>G single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000294715] Chr2:113217595 [GRCh38]
Chr2:113975172 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*2527A>G single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000321557] Chr2:113216006 [GRCh38]
Chr2:113973583 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*1393A>G single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000321813] Chr2:113217140 [GRCh38]
Chr2:113974717 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*2326A>G single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000287867] Chr2:113216207 [GRCh38]
Chr2:113973784 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*2517C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000376257] Chr2:113216016 [GRCh38]
Chr2:113973593 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.5C>T (p.Pro2Leu) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000395300] Chr2:113278390 [GRCh38]
Chr2:114035967 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*368G>C single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000397190] Chr2:113218165 [GRCh38]
Chr2:113975742 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1011C>T (p.Ser337=) single nucleotide variant not specified [RCV000606309] Chr2:113235470 [GRCh38]
Chr2:113993047 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.236C>T (p.Ser79Phe) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001170073] Chr2:113244580 [GRCh38]
Chr2:114002157 [GRCh37]
Chr2:2q14.1
likely pathogenic
NM_003466.4(PAX8):c.457_458del (p.Leu153fs) deletion Hypothyroidism, congenital, nongoitrous, 2 [RCV001170074] Chr2:113242710..113242711 [GRCh38]
Chr2:114000287..114000288 [GRCh37]
Chr2:2q14.1
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) copy number gain See cases [RCV000512056] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
NM_003466.4(PAX8):c.257C>G (p.Pro86Arg) single nucleotide variant not specified [RCV000501288] Chr2:113244559 [GRCh38]
Chr2:114002136 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.160A>T (p.Ser54Cys) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000502399] Chr2:113246785 [GRCh38]
Chr2:114004362 [GRCh37]
Chr2:2q14.1
likely pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 copy number gain See cases [RCV000511212] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q12.1-24.3(chr2:104172062-168223828)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626436] Chr2:104172062..168223828 [GRCh37]
Chr2:2q12.1-24.3
drug response
GRCh37/hg19 2q13(chr2:113698135-114064263)x1 copy number loss not provided [RCV000682066] Chr2:113698135..114064263 [GRCh37]
Chr2:2q13
uncertain significance
Single allele deletion not provided [RCV000714264] Chr2:40608411..146900718 [GRCh37]
Chr2:2p22.1-q22.3
likely pathogenic
GRCh37/hg19 2q11.1-13(chr2:96353030-114045463)x3 copy number gain not provided [RCV000682168] Chr2:96353030..114045463 [GRCh37]
Chr2:2q11.1-13
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 copy number gain not provided [RCV000752804] Chr2:15672..243101834 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
NM_003466.4(PAX8):c.1143C>T (p.Ser381=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001130603]|not provided [RCV000871445] Chr2:113227201 [GRCh38]
Chr2:113984778 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.601+51C>G single nucleotide variant not provided [RCV001709111] Chr2:113241957 [GRCh38]
Chr2:113999534 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.1087+4C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001133550]|not provided [RCV000871992]|not specified [RCV001701333] Chr2:113235390 [GRCh38]
Chr2:113992967 [GRCh37]
Chr2:2q14.1
benign|uncertain significance
NM_003466.4(PAX8):c.404A>G (p.Lys135Arg) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001130012]|not provided [RCV000872892] Chr2:113242764 [GRCh38]
Chr2:114000341 [GRCh37]
Chr2:2q14.1
benign|likely benign
NM_003466.4(PAX8):c.602G>A (p.Ser201Asn) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001135041] Chr2:113241726 [GRCh38]
Chr2:113999303 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1276+215C>T single nucleotide variant not provided [RCV001666064] Chr2:113219877 [GRCh38]
Chr2:113977454 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.984C>T (p.Ala328=) single nucleotide variant not provided [RCV000982961] Chr2:113235497 [GRCh38]
Chr2:113993074 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.705G>A (p.Pro235=) single nucleotide variant not provided [RCV000876957] Chr2:113241623 [GRCh38]
Chr2:113999200 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.708C>T (p.Leu236=) single nucleotide variant PAX8-related disorder [RCV003960622]|not provided [RCV000950971] Chr2:113241620 [GRCh38]
Chr2:113999197 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.1087+5G>A single nucleotide variant not provided [RCV000876755] Chr2:113235389 [GRCh38]
Chr2:113992966 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.981C>T (p.Ser327=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001133553]|Inborn genetic diseases [RCV002540153]|not provided [RCV000896985] Chr2:113235500 [GRCh38]
Chr2:113993077 [GRCh37]
Chr2:2q14.1
likely benign|uncertain significance
NM_003466.4(PAX8):c.1098G>A (p.Met366Ile) single nucleotide variant Inborn genetic diseases [RCV003268001] Chr2:113227246 [GRCh38]
Chr2:113984823 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.215G>A (p.Arg72Gln) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000986802] Chr2:113244601 [GRCh38]
Chr2:114002178 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.*2475C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001133323] Chr2:113216058 [GRCh38]
Chr2:113973635 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*1186G>C single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001132502] Chr2:113217347 [GRCh38]
Chr2:113974924 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1226C>G (p.Pro409Arg) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV003447577]|not provided [RCV001090266] Chr2:113220142 [GRCh38]
Chr2:113977719 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*897C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001133428] Chr2:113217636 [GRCh38]
Chr2:113975213 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*2276G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001134796]|not provided [RCV003433020] Chr2:113216257 [GRCh38]
Chr2:113973834 [GRCh37]
Chr2:2q14.1
benign|uncertain significance
NM_003466.4(PAX8):c.1028A>G (p.Asn343Ser) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000986800] Chr2:113235453 [GRCh38]
Chr2:113993030 [GRCh37]
Chr2:2q14.1
likely benign|conflicting interpretations of pathogenicity
NM_003466.4(PAX8):c.75T>C (p.Pro25=) single nucleotide variant not provided [RCV000920141] Chr2:113246870 [GRCh38]
Chr2:114004447 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.1150G>A (p.Gly384Ser) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001130602]|not provided [RCV000942295]|not specified [RCV003396553] Chr2:113227194 [GRCh38]
Chr2:113984771 [GRCh37]
Chr2:2q14.1
benign|likely benign|uncertain significance
NM_003466.4(PAX8):c.372T>C (p.Ser124=) single nucleotide variant PAX8-related disorder [RCV003965745]|not provided [RCV000871662] Chr2:113244444 [GRCh38]
Chr2:114002021 [GRCh37]
Chr2:2q14.1
benign|likely benign
NM_003466.4(PAX8):c.*2044G>C single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001134798] Chr2:113216489 [GRCh38]
Chr2:113974066 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1317A>G (p.Ala439=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001129898]|not provided [RCV000870739]|not specified [RCV001701458] Chr2:113218569 [GRCh38]
Chr2:113976146 [GRCh37]
Chr2:2q14.1
benign|likely benign
NM_003466.4(PAX8):c.324A>T (p.Arg108=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001130014] Chr2:113244492 [GRCh38]
Chr2:114002069 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.709G>C (p.Glu237Gln) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000986801] Chr2:113241619 [GRCh38]
Chr2:113999196 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.81G>A (p.Pro27=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001130725] Chr2:113246864 [GRCh38]
Chr2:114004441 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1246G>A (p.Ala416Thr) single nucleotide variant not specified [RCV004783691] Chr2:113220122 [GRCh38]
Chr2:113977699 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.632A>G (p.Asp211Gly) single nucleotide variant not provided [RCV003312483] Chr2:113241696 [GRCh38]
Chr2:113999273 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.514C>G (p.Gln172Glu) single nucleotide variant Inborn genetic diseases [RCV003291843] Chr2:113242095 [GRCh38]
Chr2:113999672 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1139C>T (p.Thr380Ile) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV000986799] Chr2:113227205 [GRCh38]
Chr2:113984782 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.*2231C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001134797] Chr2:113216302 [GRCh38]
Chr2:113973879 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*612G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001134913] Chr2:113217921 [GRCh38]
Chr2:113975498 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*501C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001134915] Chr2:113218032 [GRCh38]
Chr2:113975609 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.390-103G>T single nucleotide variant not provided [RCV001660963] Chr2:113242881 [GRCh38]
Chr2:114000458 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.191+94C>T single nucleotide variant not provided [RCV001638353] Chr2:113246660 [GRCh38]
Chr2:114004237 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.1088-337G>A single nucleotide variant not provided [RCV001669668] Chr2:113227593 [GRCh38]
Chr2:113985170 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.25+197G>T single nucleotide variant not provided [RCV001639487] Chr2:113278173 [GRCh38]
Chr2:114035750 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.778-297G>A single nucleotide variant not provided [RCV001693197] Chr2:113237018 [GRCh38]
Chr2:113994595 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.1088-353G>C single nucleotide variant not provided [RCV001676458] Chr2:113227609 [GRCh38]
Chr2:113985186 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.389+101G>A single nucleotide variant not provided [RCV001685791] Chr2:113244326 [GRCh38]
Chr2:114001903 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.1110G>A (p.Thr370=) single nucleotide variant not provided [RCV000887360] Chr2:113227234 [GRCh38]
Chr2:113984811 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.873T>G (p.Thr291=) single nucleotide variant not provided [RCV000977724] Chr2:113236626 [GRCh38]
Chr2:113994203 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.1190-10C>T single nucleotide variant not provided [RCV000945718] Chr2:113220188 [GRCh38]
Chr2:113977765 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.960C>G (p.Thr320=) single nucleotide variant not provided [RCV000977274] Chr2:113235521 [GRCh38]
Chr2:113993098 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.519G>A (p.Ser173=) single nucleotide variant not provided [RCV000978400] Chr2:113242090 [GRCh38]
Chr2:113999667 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.651C>T (p.Ser217=) single nucleotide variant not provided [RCV000895871] Chr2:113241677 [GRCh38]
Chr2:113999254 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.704C>T (p.Pro235Leu) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001135039]|Inborn genetic diseases [RCV003279138]|not provided [RCV000886388] Chr2:113241624 [GRCh38]
Chr2:113999201 [GRCh37]
Chr2:2q14.1
likely benign|uncertain significance
NM_003466.4(PAX8):c.1242C>T (p.Ser414=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001130601]|not provided [RCV000872421] Chr2:113220126 [GRCh38]
Chr2:113977703 [GRCh37]
Chr2:2q14.1
benign|likely benign
NM_003466.4(PAX8):c.1116C>T (p.Pro372=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001133549]|Inborn genetic diseases [RCV003344110]|PAX8-related disorder [RCV003955720]|not provided [RCV000874416] Chr2:113227228 [GRCh38]
Chr2:113984805 [GRCh37]
Chr2:2q14.1
benign|likely benign|uncertain significance
NM_003466.4(PAX8):c.*1942C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001129813] Chr2:113216591 [GRCh38]
Chr2:113974168 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*1066G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001132503] Chr2:113217467 [GRCh38]
Chr2:113975044 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*2368C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001133324] Chr2:113216165 [GRCh38]
Chr2:113973742 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*844C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001133429] Chr2:113217689 [GRCh38]
Chr2:113975266 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*766C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001133430] Chr2:113217767 [GRCh38]
Chr2:113975344 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.701A>G (p.Glu234Gly) single nucleotide variant not provided [RCV001578155] Chr2:113241627 [GRCh38]
Chr2:113999204 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1190-181G>A single nucleotide variant not provided [RCV001677692] Chr2:113220359 [GRCh38]
Chr2:113977936 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.778-119C>A single nucleotide variant not provided [RCV001675253] Chr2:113236840 [GRCh38]
Chr2:113994417 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.479-29C>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001788686]|not provided [RCV001654848] Chr2:113242159 [GRCh38]
Chr2:113999736 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.192-244A>G single nucleotide variant not provided [RCV001638790] Chr2:113244868 [GRCh38]
Chr2:114002445 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.777+105A>G single nucleotide variant not provided [RCV001721793] Chr2:113241446 [GRCh38]
Chr2:113999023 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.478+135G>A single nucleotide variant not provided [RCV001721818] Chr2:113242555 [GRCh38]
Chr2:114000132 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.479-119T>C single nucleotide variant not provided [RCV001721823] Chr2:113242249 [GRCh38]
Chr2:113999826 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.898+99G>A single nucleotide variant not provided [RCV001620737] Chr2:113236502 [GRCh38]
Chr2:113994079 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.25+24T>C single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001788741]|not provided [RCV001678111] Chr2:113278346 [GRCh38]
Chr2:114035923 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.*290G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001129897]|not provided [RCV004694818] Chr2:113218243 [GRCh38]
Chr2:113975820 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.441C>T (p.Cys147=) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001130011] Chr2:113242727 [GRCh38]
Chr2:114000304 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.346G>A (p.Val116Ile) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001130013]|Inborn genetic diseases [RCV002558270] Chr2:113244470 [GRCh38]
Chr2:114002047 [GRCh37]
Chr2:2q14.1
likely benign|uncertain significance
NM_003466.4(PAX8):c.*372C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001129895] Chr2:113218161 [GRCh38]
Chr2:113975738 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.191+6C>G single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001130724] Chr2:113246748 [GRCh38]
Chr2:114004325 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.-63C>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001130726]|not provided [RCV003433016] Chr2:113278457 [GRCh38]
Chr2:114036034 [GRCh37]
Chr2:2q14.1
benign|conflicting interpretations of pathogenicity|uncertain significance
NM_003466.4(PAX8):c.479-68C>T single nucleotide variant not provided [RCV001615024] Chr2:113242198 [GRCh38]
Chr2:113999775 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.778-212T>C single nucleotide variant not provided [RCV001611941] Chr2:113236933 [GRCh38]
Chr2:113994510 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.389+83T>C single nucleotide variant not provided [RCV001713755] Chr2:113244344 [GRCh38]
Chr2:114001921 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.899-185T>G single nucleotide variant not provided [RCV001614083] Chr2:113235767 [GRCh38]
Chr2:113993344 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.778-163C>T single nucleotide variant not provided [RCV001696035] Chr2:113236884 [GRCh38]
Chr2:113994461 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.1190-107A>C single nucleotide variant not provided [RCV001684461] Chr2:113220285 [GRCh38]
Chr2:113977862 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.898+195A>G single nucleotide variant not provided [RCV001684930] Chr2:113236406 [GRCh38]
Chr2:113993983 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.*343G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001129896] Chr2:113218190 [GRCh38]
Chr2:113975767 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.122G>A (p.Gly41Asp) single nucleotide variant not provided [RCV001574478] Chr2:113246823 [GRCh38]
Chr2:114004400 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1190-127G>A single nucleotide variant not provided [RCV001644136] Chr2:113220305 [GRCh38]
Chr2:113977882 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.*697C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001134911] Chr2:113217836 [GRCh38]
Chr2:113975413 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*664T>C single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001134912] Chr2:113217869 [GRCh38]
Chr2:113975446 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*472C>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001134916] Chr2:113218061 [GRCh38]
Chr2:113975638 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.97C>T (p.Arg33Cys) single nucleotide variant not provided [RCV001200130] Chr2:113246848 [GRCh38]
Chr2:114004425 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*1490G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001129814] Chr2:113217043 [GRCh38]
Chr2:113974620 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.280G>A (p.Asp94Asn) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001130015] Chr2:113244536 [GRCh38]
Chr2:114002113 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*1060C>G single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001132504] Chr2:113217473 [GRCh38]
Chr2:113975050 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1009T>G (p.Ser337Ala) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001133551]|Inborn genetic diseases [RCV002556863]|not specified [RCV002509615] Chr2:113235472 [GRCh38]
Chr2:113993049 [GRCh37]
Chr2:2q14.1
likely benign|uncertain significance
NM_003466.4(PAX8):c.-75-4G>T single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001130727] Chr2:113278473 [GRCh38]
Chr2:114036050 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.203C>T (p.Thr68Ile) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001093620] Chr2:113244613 [GRCh38]
Chr2:114002190 [GRCh37]
Chr2:2q14.1
likely pathogenic
NM_003466.4(PAX8):c.*527G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001134914] Chr2:113218006 [GRCh38]
Chr2:113975583 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.817G>A (p.Asp273Asn) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001135038] Chr2:113236682 [GRCh38]
Chr2:113994259 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.700G>A (p.Glu234Lys) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001135040]|not provided [RCV003229879] Chr2:113241628 [GRCh38]
Chr2:113999205 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.*1457G>A single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001129815] Chr2:113217076 [GRCh38]
Chr2:113974653 [GRCh37]
Chr2:2q14.1
uncertain significance
GRCh37/hg19 2q13(chr2:113853399-114095549)x1 copy number loss not provided [RCV001259646] Chr2:113853399..114095549 [GRCh37]
Chr2:2q13
pathogenic
NM_003466.4(PAX8):c.899-226G>C single nucleotide variant not provided [RCV001663322] Chr2:113235808 [GRCh38]
Chr2:113993385 [GRCh37]
Chr2:2q14.1
benign
GRCh37/hg19 2p25.3-q37.3(chr2:1-243199373) copy number gain Mosaic trisomy 2 [RCV002280628] Chr2:1..243199373 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
NM_003466.4(PAX8):c.91C>T (p.Arg31Cys) single nucleotide variant not provided [RCV001268079] Chr2:113246854 [GRCh38]
Chr2:114004431 [GRCh37]
Chr2:2q14.1
pathogenic
NM_003466.4(PAX8):c.1277-10A>G single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001331055] Chr2:113218619 [GRCh38]
Chr2:113976196 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.580G>A (p.Asp194Asn) single nucleotide variant not provided [RCV001354562] Chr2:113242029 [GRCh38]
Chr2:113999606 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.397C>T (p.Arg133Trp) single nucleotide variant Congenital hypothyroidism [RCV001270337] Chr2:113242771 [GRCh38]
Chr2:114000348 [GRCh37]
Chr2:2q14.1
pathogenic
NM_003466.4(PAX8):c.777G>C (p.Gln259His) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV001331056] Chr2:113241551 [GRCh38]
Chr2:113999128 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.101T>A (p.Ile34Asn) single nucleotide variant Congenital hypothyroidism [RCV001270336] Chr2:113246844 [GRCh38]
Chr2:114004421 [GRCh37]
Chr2:2q14.1
pathogenic
NM_003466.4(PAX8):c.658C>T (p.Arg220Ter) single nucleotide variant Congenital hypothyroidism [RCV001270341] Chr2:113241670 [GRCh38]
Chr2:113999247 [GRCh37]
Chr2:2q14.1
pathogenic
NM_003466.4(PAX8):c.1189+229G>A single nucleotide variant not provided [RCV001645964] Chr2:113226926 [GRCh38]
Chr2:113984503 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.479-236_479-235del microsatellite not provided [RCV001615614] Chr2:113242365..113242366 [GRCh38]
Chr2:113999942..113999943 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.1087+169_1087+170del deletion not provided [RCV001684633] Chr2:113235224..113235225 [GRCh38]
Chr2:113992801..113992802 [GRCh37]
Chr2:2q14.1
benign
NM_003466.4(PAX8):c.1189+138A>G single nucleotide variant not provided [RCV001708734] Chr2:113227017 [GRCh38]
Chr2:113984594 [GRCh37]
Chr2:2q14.1
benign
GRCh37/hg19 2q13-14.1(chr2:113609489-115817535)x3 copy number gain not provided [RCV001833062] Chr2:113609489..115817535 [GRCh37]
Chr2:2q13-14.1
uncertain significance
NM_003466.4(PAX8):c.1109C>T (p.Thr370Met) single nucleotide variant Inborn genetic diseases [RCV003247010]|not provided [RCV001762935] Chr2:113227235 [GRCh38]
Chr2:113984812 [GRCh37]
Chr2:2q14.1
likely benign|uncertain significance
NM_003466.4(PAX8):c.602-12G>A single nucleotide variant not provided [RCV001786686] Chr2:113241738 [GRCh38]
Chr2:113999315 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.237dup (p.Lys80fs) duplication Hypothyroidism, congenital, nongoitrous, 2 [RCV001795825] Chr2:113244578..113244579 [GRCh38]
Chr2:114002155..114002156 [GRCh37]
Chr2:2q14.1
likely pathogenic
NM_003466.4(PAX8):c.601A>C (p.Ser201Arg) single nucleotide variant not provided [RCV001797498] Chr2:113242008 [GRCh38]
Chr2:113999585 [GRCh37]
Chr2:2q14.1
uncertain significance
GRCh37/hg19 2q13(chr2:113295194-114085649)x3 copy number gain not provided [RCV001834499] Chr2:113295194..114085649 [GRCh37]
Chr2:2q13
uncertain significance
GRCh37/hg19 2q13-22.3(chr2:111484468-146333604)x3 copy number gain not provided [RCV001832896] Chr2:111484468..146333604 [GRCh37]
Chr2:2q13-22.3
pathogenic
GRCh37/hg19 2q13-14.3(chr2:113188197-128144700) copy number loss not specified [RCV002053220] Chr2:113188197..128144700 [GRCh37]
Chr2:2q13-14.3
pathogenic
NM_003466.4(PAX8):c.754C>G (p.Pro252Ala) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV003485743]|not provided [RCV001903444] Chr2:113241574 [GRCh38]
Chr2:113999151 [GRCh37]
Chr2:2q14.1
uncertain significance
GRCh37/hg19 2q13-22.3(chr2:112475655-145691999)x3 copy number gain 2q13q22.3 microduplication syndrome [RCV002226436] Chr2:112475655..145691999 [GRCh37]
Chr2:2q13-22.3
pathogenic
NM_003466.4(PAX8):c.619C>T (p.Arg207Ter) single nucleotide variant not provided [RCV002223666] Chr2:113241709 [GRCh38]
Chr2:113999286 [GRCh37]
Chr2:2q14.1
likely pathogenic
NM_003466.4(PAX8):c.325G>C (p.Asp109His) single nucleotide variant not provided [RCV003152268] Chr2:113244491 [GRCh38]
Chr2:114002068 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1145del (p.Gly382fs) deletion not provided [RCV002288087] Chr2:113227199 [GRCh38]
Chr2:113984776 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.31G>A (p.Gly11Arg) single nucleotide variant not provided [RCV002467252] Chr2:113246914 [GRCh38]
Chr2:114004491 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1050C>A (p.Ser350=) single nucleotide variant Inborn genetic diseases [RCV002683350]|not specified [RCV004700981] Chr2:113235431 [GRCh38]
Chr2:113993008 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.673A>C (p.Thr225Pro) single nucleotide variant not provided [RCV002511401] Chr2:113241655 [GRCh38]
Chr2:113999232 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.593T>C (p.Met198Thr) single nucleotide variant Inborn genetic diseases [RCV002816852] Chr2:113242016 [GRCh38]
Chr2:113999593 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.620G>A (p.Arg207Gln) single nucleotide variant Inborn genetic diseases [RCV002865293] Chr2:113241708 [GRCh38]
Chr2:113999285 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1045G>C (p.Ala349Pro) single nucleotide variant Inborn genetic diseases [RCV002888938] Chr2:113235436 [GRCh38]
Chr2:113993013 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.601+6T>A single nucleotide variant Inborn genetic diseases [RCV002712933] Chr2:113242002 [GRCh38]
Chr2:113999579 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.466G>A (p.Gly156Arg) single nucleotide variant Inborn genetic diseases [RCV002988012] Chr2:113242702 [GRCh38]
Chr2:114000279 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.565G>A (p.Ala189Thr) single nucleotide variant Inborn genetic diseases [RCV002963721] Chr2:113242044 [GRCh38]
Chr2:113999621 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1091G>A (p.Arg364Gln) single nucleotide variant Inborn genetic diseases [RCV002724880] Chr2:113227253 [GRCh38]
Chr2:113984830 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.162_163delinsGA (p.Ser54_His55delinsArgAsn) indel not provided [RCV004779927] Chr2:113246782..113246783 [GRCh38]
Chr2:114004359..114004360 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.670C>T (p.Arg224Cys) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV003131879] Chr2:113241658 [GRCh38]
Chr2:113999235 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1189G>A (p.Gly397Arg) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV003134751] Chr2:113227155 [GRCh38]
Chr2:113984732 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.962C>A (p.Pro321His) single nucleotide variant not provided [RCV003318927] Chr2:113235519 [GRCh38]
Chr2:113993096 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.530G>A (p.Gly177Asp) single nucleotide variant Inborn genetic diseases [RCV003373421] Chr2:113242079 [GRCh38]
Chr2:113999656 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.530G>T (p.Gly177Val) single nucleotide variant PAX8-related disorder [RCV003399827] Chr2:113242079 [GRCh38]
Chr2:113999656 [GRCh37]
Chr2:2q14.1
uncertain significance
GRCh37/hg19 2q12.2-21.2(chr2:106755586-134302739)x1 copy number loss not specified [RCV003986380] Chr2:106755586..134302739 [GRCh37]
Chr2:2q12.2-21.2
pathogenic
NM_003466.4(PAX8):c.205G>A (p.Gly69Ser) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV003985221] Chr2:113244611 [GRCh38]
Chr2:114002188 [GRCh37]
Chr2:2q14.1
likely pathogenic
NM_003466.4(PAX8):c.711G>C (p.Glu237Asp) single nucleotide variant Inborn genetic diseases [RCV004502889] Chr2:113241617 [GRCh38]
Chr2:113999194 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.938A>T (p.Glu313Val) single nucleotide variant Inborn genetic diseases [RCV004502891] Chr2:113235543 [GRCh38]
Chr2:113993120 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1310C>T (p.Pro437Leu) single nucleotide variant Inborn genetic diseases [RCV004502887] Chr2:113218576 [GRCh38]
Chr2:113976153 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.746A>C (p.Tyr249Ser) single nucleotide variant Inborn genetic diseases [RCV004502890] Chr2:113241582 [GRCh38]
Chr2:113999159 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1040A>G (p.His347Arg) single nucleotide variant Inborn genetic diseases [RCV004502886] Chr2:113235441 [GRCh38]
Chr2:113993018 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.609G>A (p.Gln203=) single nucleotide variant Inborn genetic diseases [RCV004502888] Chr2:113241719 [GRCh38]
Chr2:113999296 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.974C>A (p.Ser325Tyr) single nucleotide variant Inborn genetic diseases [RCV004502892] Chr2:113235507 [GRCh38]
Chr2:113993084 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.961C>T (p.Pro321Ser) single nucleotide variant Inborn genetic diseases [RCV004664236] Chr2:113235520 [GRCh38]
Chr2:113993097 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1223C>A (p.Thr408Asn) single nucleotide variant Inborn genetic diseases [RCV004651022] Chr2:113220145 [GRCh38]
Chr2:113977722 [GRCh37]
Chr2:2q14.1
uncertain significance
NM_003466.4(PAX8):c.1256T>G (p.Phe419Cys) single nucleotide variant not provided [RCV004764168]   uncertain significance
NM_003466.4(PAX8):c.729G>A (p.Gln243=) single nucleotide variant not specified [RCV004699829] Chr2:113241599 [GRCh38]
Chr2:113999176 [GRCh37]
Chr2:2q14.1
likely benign
NM_003466.4(PAX8):c.591A>C (p.Lys197Asn) single nucleotide variant Hypothyroidism, congenital, nongoitrous, 2 [RCV004764498] Chr2:113242018 [GRCh38]
Chr2:113999595 [GRCh37]
Chr2:2q14.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:8428
Count of miRNA genes:1157
Interacting mature miRNAs:1473
Transcripts:ENST00000263334, ENST00000263335, ENST00000348715, ENST00000397647, ENST00000429538, ENST00000465084, ENST00000467778, ENST00000468980, ENST00000480684, ENST00000485840, ENST00000497038, ENST00000554352, ENST00000554830
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407249990GWAS898966_Hbody height QTL GWAS898966 (human)4e-08body height (VT:0001253)body height (CMO:0000106)2113253214113253215Human
407408521GWAS1057497_Heducational attainment QTL GWAS1057497 (human)2e-08educational attainment2113221073113221074Human
407316486GWAS965462_Hcalcium measurement QTL GWAS965462 (human)6e-22calcium measurementblood calcium level (CMO:0000502)2113250998113250999Human
407339844GWAS988820_HCervicitis QTL GWAS988820 (human)4e-10Cervicitis2113217533113217534Human
407148736GWAS797712_Hcalcium measurement QTL GWAS797712 (human)1e-09cervical carcinoma, Cervical Intraepithelial Neoplasia Grade 2/3blood calcium level (CMO:0000502)2113230915113230916Human
407245326GWAS894302_Hblood urea nitrogen measurement QTL GWAS894302 (human)2e-53blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)2113235808113235809Human
407145806GWAS794782_Hblood urea nitrogen measurement QTL GWAS794782 (human)1e-34blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)2113235808113235809Human
406973581GWAS622557_HCervical ectropion QTL GWAS622557 (human)5e-16Cervical ectropion2113226456113226457Human
407394182GWAS1043158_Hinsomnia QTL GWAS1043158 (human)6e-10insomnia2113218346113218347Human
407021325GWAS670301_Hurate measurement QTL GWAS670301 (human)0.0000007urate measurementblood uric acid level (CMO:0000501)2113223445113223446Human
407143380GWAS792356_Hbody mass index QTL GWAS792356 (human)0.0000003body mass indexbody mass index (BMI) (CMO:0000105)2113256632113256633Human
407246295GWAS895271_Hblood urea nitrogen measurement QTL GWAS895271 (human)3e-36blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)2113235808113235809Human
407109911GWAS758887_Hbody mass index QTL GWAS758887 (human)0.0000002body mass indexbody mass index (BMI) (CMO:0000105)2113237018113237019Human
406973589GWAS622565_Hcervical cancer QTL GWAS622565 (human)1e-15cervical cancer2113225007113225008Human
407207699GWAS856675_Hcancer QTL GWAS856675 (human)3e-11cancer2113230915113230916Human
407224348GWAS873324_Hlymphocyte count QTL GWAS873324 (human)4e-11lymphocyte countblood lymphocyte count (CMO:0000031)2113216055113216056Human
407374036GWAS1023012_Hoptic disc size measurement QTL GWAS1023012 (human)8e-10optic disc size measurement2113224463113224464Human
407365211GWAS1014187_Hcalcium measurement QTL GWAS1014187 (human)2e-21calcium measurementblood calcium level (CMO:0000502)2113260743113260744Human
406973596GWAS622572_Hcervical cancer QTL GWAS622572 (human)9e-15cervical cancer2113225007113225008Human
407250521GWAS899497_Herythrocyte count QTL GWAS899497 (human)4e-28erythrocyte countred blood cell count (CMO:0000025)2113217489113217490Human
407175204GWAS824180_Hbody mass index QTL GWAS824180 (human)3e-08body mass indexbody mass index (BMI) (CMO:0000105)2113221583113221584Human
407109602GWAS758578_Hbody mass index QTL GWAS758578 (human)5e-09body mass indexbody mass index (BMI) (CMO:0000105)2113221583113221584Human
407210913GWAS859889_Hcervical carcinoma QTL GWAS859889 (human)8e-14cervical carcinoma2113230915113230916Human
407158819GWAS807795_HIGF-1 measurement QTL GWAS807795 (human)2e-14IGF-1 measurementblood insulin-like growth factor 1 level (CMO:0001297)2113230915113230916Human
407159599GWAS808575_Hserum urea measurement QTL GWAS808575 (human)5e-24serum urea measurementserum urea level (CMO:0003877)2113230915113230916Human
407342443GWAS991419_Hurate measurement QTL GWAS991419 (human)5e-12urate measurementblood uric acid level (CMO:0000501)2113217533113217534Human
406957676GWAS606652_Hhemoglobin measurement QTL GWAS606652 (human)2e-09hemoglobin measurementhemoglobin measurement (CMO:0000508)2113259452113259453Human
407340534GWAS989510_Hdysplasia of cervix QTL GWAS989510 (human)6e-09dysplasia of cervix2113217533113217534Human
407157751GWAS806727_Hurate measurement QTL GWAS806727 (human)5e-13urate measurementblood uric acid level (CMO:0000501)2113230915113230916Human
407363571GWAS1012547_Hhigh grade ovarian serous adenocarcinoma QTL GWAS1012547 (human)0.0000001high grade ovarian serous adenocarcinoma2113216387113216388Human
407335921GWAS984897_Heducational attainment QTL GWAS984897 (human)6e-08educational attainment2113217533113217534Human
407225203GWAS874179_Htriglyceride measurement QTL GWAS874179 (human)0.000001triglyceride measurementblood triglyceride level (CMO:0000118)2113240268113240269Human
407271920GWAS920896_Hbody height QTL GWAS920896 (human)2e-39body height (VT:0001253)body height (CMO:0000106)2113253214113253215Human
407016693GWAS665669_Hurate measurement QTL GWAS665669 (human)4e-08urate measurementblood uric acid level (CMO:0000501)2113223445113223446Human
407144563GWAS793539_Hbody weight QTL GWAS793539 (human)0.000001body mass (VT:0001259)body weight (CMO:0000012)2113256632113256633Human
407040821GWAS689797_Hheel bone mineral density QTL GWAS689797 (human)0.0000001heel bone mineral densitybone mineral density (CMO:0001226)2113269305113269306Human
407332159GWAS981135_HC-reactive protein measurement QTL GWAS981135 (human)8e-10C-reactive protein measurementblood C-reactive protein level (CMO:0003160)2113220606113220607Human
407218942GWAS867918_Hblood urea nitrogen measurement QTL GWAS867918 (human)0.0000005blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)2113259452113259453Human
407149369GWAS798345_Hcystatin C measurement QTL GWAS798345 (human)1e-11cystatin C measurementblood cystatin C level (CMO:0002777)2113230915113230916Human
407161529GWAS810505_Hovarian mucinous adenocarcinoma QTL GWAS810505 (human)0.0000008ovarian mucinous adenocarcinoma2113258824113258825Human
407412278GWAS1061254_Hblood urea nitrogen measurement QTL GWAS1061254 (human)2e-12blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)2113221073113221074Human
407210619GWAS859595_Hsleep duration QTL GWAS859595 (human)3e-08sleep duration2113243289113243290Human

Markers in Region
RH45733  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372113,974,956 - 113,975,130UniSTSGRCh37
Build 362113,691,427 - 113,691,601RGDNCBI36
Celera2107,359,543 - 107,359,717RGD
Cytogenetic Map2q13UniSTS
HuRef2106,428,996 - 106,429,170UniSTS
GeneMap99-GB4 RH Map2411.88UniSTS
NCBI RH Map2844.2UniSTS
RH80705  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372113,975,000 - 113,975,204UniSTSGRCh37
Build 362113,691,471 - 113,691,675RGDNCBI36
Celera2107,359,587 - 107,359,791RGD
Cytogenetic Map2q13UniSTS
HuRef2106,429,040 - 106,429,244UniSTS
GeneMap99-GB4 RH Map2414.84UniSTS
RH94024  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372113,973,702 - 113,973,829UniSTSGRCh37
Build 362113,690,173 - 113,690,300RGDNCBI36
Celera2107,358,289 - 107,358,416RGD
Cytogenetic Map2q13UniSTS
HuRef2106,427,742 - 106,427,869UniSTS
GeneMap99-GB4 RH Map2412.66UniSTS
D11Bir2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372114,002,066 - 114,002,203UniSTSGRCh37
Build 362113,718,536 - 113,718,673RGDNCBI36
Celera2107,386,636 - 107,386,773RGD
HuRef2106,456,284 - 106,456,421UniSTS
D2S1597E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372113,998,158 - 113,998,379UniSTSGRCh37
Build 362113,714,628 - 113,714,849RGDNCBI36
Celera2107,382,729 - 107,382,950RGD
Cytogenetic Map2q13UniSTS
HuRef2106,452,381 - 106,452,602UniSTS
PAX8__1200  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372113,974,849 - 113,975,707UniSTSGRCh37
Build 362113,691,320 - 113,692,178RGDNCBI36
Celera2107,359,436 - 107,360,294RGD
HuRef2106,428,889 - 106,429,747UniSTS
WI-19770  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372113,974,962 - 113,975,176UniSTSGRCh37
Build 362113,691,433 - 113,691,647RGDNCBI36
Celera2107,359,549 - 107,359,763RGD
Cytogenetic Map2q13UniSTS
HuRef2106,429,002 - 106,429,216UniSTS
GeneMap99-GB4 RH Map2412.99UniSTS
Whitehead-RH Map2590.7UniSTS
NCBI RH Map2844.2UniSTS
RH79182  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372113,998,199 - 113,998,379UniSTSGRCh37
Build 362113,714,669 - 113,714,849RGDNCBI36
Celera2107,382,770 - 107,382,950RGD
Cytogenetic Map2q13UniSTS
HuRef2106,452,422 - 106,452,602UniSTS
GeneMap99-GB4 RH Map2412.66UniSTS
NCBI RH Map2844.2UniSTS
SHGC-52928  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372113,973,774 - 113,973,951UniSTSGRCh37
Build 362113,690,245 - 113,690,422RGDNCBI36
Celera2107,358,361 - 107,358,538RGD
Cytogenetic Map2q13UniSTS
HuRef2106,427,814 - 106,427,991UniSTS
TNG Radiation Hybrid Map264627.0UniSTS
D2S1963  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372113,998,158 - 113,998,390UniSTSGRCh37
Build 362113,714,628 - 113,714,860RGDNCBI36
Celera2107,382,729 - 107,382,961RGD
Cytogenetic Map2q13UniSTS
HuRef2106,452,381 - 106,452,613UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2423 2777 2230 4856 1724 2312 5 622 1810 465 2204 7136 6319 41 3680 850 1730 1578 170

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_012384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC016683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK096795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK124991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU141429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG398792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM726535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR936798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ695202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC733810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ545884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L19606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S77904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S77905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S77906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X69699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X99590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000263334   ⟹   ENSP00000263334
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,215,997 - 113,278,921 (-)Ensembl
Ensembl Acc Id: ENST00000263335   ⟹   ENSP00000263335
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,215,997 - 113,278,911 (-)Ensembl
Ensembl Acc Id: ENST00000348715   ⟹   ENSP00000314750
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,215,997 - 113,278,911 (-)Ensembl
Ensembl Acc Id: ENST00000397647   ⟹   ENSP00000380768
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,215,997 - 113,278,911 (-)Ensembl
Ensembl Acc Id: ENST00000429538   ⟹   ENSP00000395498
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,215,997 - 113,278,921 (-)Ensembl
Ensembl Acc Id: ENST00000465084   ⟹   ENSP00000452547
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,218,249 - 113,235,443 (-)Ensembl
Ensembl Acc Id: ENST00000467778
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,241,078 - 113,278,919 (-)Ensembl
Ensembl Acc Id: ENST00000468980   ⟹   ENSP00000451240
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,217,376 - 113,278,417 (-)Ensembl
Ensembl Acc Id: ENST00000480684
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,218,469 - 113,220,477 (-)Ensembl
Ensembl Acc Id: ENST00000485840
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,225,597 - 113,237,508 (-)Ensembl
Ensembl Acc Id: ENST00000497038   ⟹   ENSP00000451618
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,218,522 - 113,241,779 (-)Ensembl
Ensembl Acc Id: ENST00000554352
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,235,345 - 113,236,929 (-)Ensembl
Ensembl Acc Id: ENST00000554830   ⟹   ENSP00000451213
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,241,551 - 113,278,898 (-)Ensembl
Ensembl Acc Id: ENST00000681162   ⟹   ENSP00000505425
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,215,997 - 113,278,921 (-)Ensembl
RefSeq Acc Id: NM_003466   ⟹   NP_003457
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382113,215,997 - 113,278,921 (-)NCBI
GRCh372113,973,574 - 114,036,527 (-)NCBI
Build 362113,690,045 - 113,752,968 (-)NCBI Archive
HuRef2106,427,614 - 106,522,962 (-)ENTREZGENE
CHM1_12113,977,965 - 114,040,915 (-)NCBI
T2T-CHM13v2.02113,642,573 - 113,705,473 (-)NCBI
Sequence:
RefSeq Acc Id: NM_013952   ⟹   NP_039246
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382113,215,997 - 113,278,921 (-)NCBI
GRCh372113,973,574 - 114,036,527 (-)NCBI
Build 362113,690,045 - 113,752,968 (-)NCBI Archive
HuRef2106,427,614 - 106,522,962 (-)ENTREZGENE
CHM1_12113,977,965 - 114,040,915 (-)NCBI
T2T-CHM13v2.02113,642,573 - 113,705,473 (-)NCBI
Sequence:
RefSeq Acc Id: NM_013953   ⟹   NP_039247
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382113,215,997 - 113,278,921 (-)NCBI
GRCh372113,973,574 - 114,036,527 (-)NCBI
Build 362113,690,045 - 113,752,968 (-)NCBI Archive
HuRef2106,427,614 - 106,522,962 (-)ENTREZGENE
CHM1_12113,977,965 - 114,040,915 (-)NCBI
T2T-CHM13v2.02113,642,573 - 113,705,473 (-)NCBI
Sequence:
RefSeq Acc Id: NM_013992   ⟹   NP_054698
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382113,215,997 - 113,278,921 (-)NCBI
GRCh372113,973,574 - 114,036,527 (-)NCBI
Build 362113,690,045 - 113,752,968 (-)NCBI Archive
HuRef2106,427,614 - 106,522,962 (-)ENTREZGENE
CHM1_12113,977,965 - 114,040,915 (-)NCBI
T2T-CHM13v2.02113,642,573 - 113,705,473 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_003457 (Get FASTA)   NCBI Sequence Viewer  
  NP_039246 (Get FASTA)   NCBI Sequence Viewer  
  NP_039247 (Get FASTA)   NCBI Sequence Viewer  
  NP_054698 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA03539 (Get FASTA)   NCBI Sequence Viewer  
  AAB34216 (Get FASTA)   NCBI Sequence Viewer  
  AAB34217 (Get FASTA)   NCBI Sequence Viewer  
  AAB34218 (Get FASTA)   NCBI Sequence Viewer  
  AAH01060 (Get FASTA)   NCBI Sequence Viewer  
  AAX88880 (Get FASTA)   NCBI Sequence Viewer  
  AGN95866 (Get FASTA)   NCBI Sequence Viewer  
  ALQ33862 (Get FASTA)   NCBI Sequence Viewer  
  ALQ33863 (Get FASTA)   NCBI Sequence Viewer  
  ALQ33864 (Get FASTA)   NCBI Sequence Viewer  
  BAF84880 (Get FASTA)   NCBI Sequence Viewer  
  CAA67903 (Get FASTA)   NCBI Sequence Viewer  
  EAW73629 (Get FASTA)   NCBI Sequence Viewer  
  EAW73630 (Get FASTA)   NCBI Sequence Viewer  
  EAW73631 (Get FASTA)   NCBI Sequence Viewer  
  EAW73632 (Get FASTA)   NCBI Sequence Viewer  
  EAW73633 (Get FASTA)   NCBI Sequence Viewer  
  EAW73634 (Get FASTA)   NCBI Sequence Viewer  
  EAW73635 (Get FASTA)   NCBI Sequence Viewer  
  EAW73636 (Get FASTA)   NCBI Sequence Viewer  
  EAW73637 (Get FASTA)   NCBI Sequence Viewer  
  EAW73638 (Get FASTA)   NCBI Sequence Viewer  
  EAW73639 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000263334.6
  ENSP00000263335
  ENSP00000263335.7
  ENSP00000314750
  ENSP00000314750.5
  ENSP00000380768
  ENSP00000380768.3
  ENSP00000395498
  ENSP00000395498.3
  ENSP00000451213.2
  ENSP00000451240.2
  ENSP00000451618.3
  ENSP00000452547.1
  ENSP00000505425.1
GenBank Protein Q06710 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_054698   ⟸   NM_013992
- Peptide Label: isoform PAX8E
- UniProtKB: Q06710 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_039247   ⟸   NM_013953
- Peptide Label: isoform PAX8D
- Sequence:
RefSeq Acc Id: NP_039246   ⟸   NM_013952
- Peptide Label: isoform PAX8C
- Sequence:
RefSeq Acc Id: NP_003457   ⟸   NM_003466
- Peptide Label: isoform PAX8A
- UniProtKB: Q4ZG35 (UniProtKB/Swiss-Prot),   Q16339 (UniProtKB/Swiss-Prot),   Q16338 (UniProtKB/Swiss-Prot),   Q16337 (UniProtKB/Swiss-Prot),   Q09155 (UniProtKB/Swiss-Prot),   Q96J49 (UniProtKB/Swiss-Prot),   Q06710 (UniProtKB/Swiss-Prot),   R9W7C9 (UniProtKB/TrEMBL),   A0A024R4X3 (UniProtKB/TrEMBL),   A0A7P0T907 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000452547   ⟸   ENST00000465084
Ensembl Acc Id: ENSP00000314750   ⟸   ENST00000348715
Ensembl Acc Id: ENSP00000451240   ⟸   ENST00000468980
Ensembl Acc Id: ENSP00000395498   ⟸   ENST00000429538
Ensembl Acc Id: ENSP00000451618   ⟸   ENST00000497038
Ensembl Acc Id: ENSP00000263335   ⟸   ENST00000263335
Ensembl Acc Id: ENSP00000263334   ⟸   ENST00000263334
Ensembl Acc Id: ENSP00000451213   ⟸   ENST00000554830
Ensembl Acc Id: ENSP00000380768   ⟸   ENST00000397647
Ensembl Acc Id: ENSP00000505425   ⟸   ENST00000681162
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q06710-F1-model_v2 AlphaFold Q06710 1-450 view protein structure

Promoters
RGD ID:6861400
Promoter ID:EPDNEW_H3864
Type:initiation region
Name:PAX8_1
Description:paired box 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382113,278,921 - 113,278,981EPDNEW
RGD ID:6797919
Promoter ID:HG_KWN:34602
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid
Transcripts:OTTHUMT00000250362
Position:
Human AssemblyChrPosition (strand)Source
Build 362113,693,971 - 113,694,471 (-)MPROMDB
RGD ID:6797101
Promoter ID:HG_KWN:34603
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000250361,   OTTHUMT00000330810,   OTTHUMT00000330813,   UC002TJQ.2,   UC010FKS.1,   UC010FKT.1
Position:
Human AssemblyChrPosition (strand)Source
Build 362113,709,311 - 113,709,811 (+)MPROMDB
RGD ID:6797916
Promoter ID:HG_KWN:34605
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:NB4
Transcripts:OTTHUMT00000250357
Position:
Human AssemblyChrPosition (strand)Source
Build 362113,710,471 - 113,710,971 (-)MPROMDB
RGD ID:6797917
Promoter ID:HG_KWN:34606
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000250358,   OTTHUMT00000250360
Position:
Human AssemblyChrPosition (strand)Source
Build 362113,715,621 - 113,716,562 (-)MPROMDB
RGD ID:6797918
Promoter ID:HG_KWN:34607
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:NB4
Transcripts:ENST00000263334,   ENST00000348715,   ENST00000351165,   ENST00000357024
Position:
Human AssemblyChrPosition (strand)Source
Build 362113,720,721 - 113,721,221 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:8622 AgrOrtholog
COSMIC PAX8 COSMIC
Ensembl Genes ENSG00000125618 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000263334.9 UniProtKB/Swiss-Prot
  ENST00000263335 ENTREZGENE
  ENST00000263335.11 UniProtKB/Swiss-Prot
  ENST00000348715 ENTREZGENE
  ENST00000348715.9 UniProtKB/Swiss-Prot
  ENST00000397647 ENTREZGENE
  ENST00000397647.7 UniProtKB/Swiss-Prot
  ENST00000429538 ENTREZGENE
  ENST00000429538.8 UniProtKB/Swiss-Prot
  ENST00000465084.1 UniProtKB/TrEMBL
  ENST00000468980.4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENST00000497038.6 UniProtKB/TrEMBL
  ENST00000554830.2 UniProtKB/TrEMBL
  ENST00000681162.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000125618 GTEx
HGNC ID HGNC:8622 ENTREZGENE
Human Proteome Map PAX8 Human Proteome Map
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAIRED_DNA_bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Paired_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pax2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAX_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:7849 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 7849 ENTREZGENE
OMIM 167415 OMIM
PANTHER PAIRED BOX PROTEIN PAX-8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45636 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PAX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pax2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA32962 PharmGKB
PRINTS PAIREDBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PAIRED_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAIRED_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PAX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A024R4X3 ENTREZGENE
  A0A024R531_HUMAN UniProtKB/TrEMBL
  A0A0S2Z4P2_HUMAN UniProtKB/TrEMBL
  A0A140TA56_HUMAN UniProtKB/TrEMBL
  A0A7P0T907 ENTREZGENE, UniProtKB/TrEMBL
  G3V3F3_HUMAN UniProtKB/TrEMBL
  H0YJD1_HUMAN UniProtKB/TrEMBL
  H0YJZ5_HUMAN UniProtKB/TrEMBL
  PAX8_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q09155 ENTREZGENE
  Q16337 ENTREZGENE
  Q16338 ENTREZGENE
  Q16339 ENTREZGENE
  Q4ZG35 ENTREZGENE
  Q96J49 ENTREZGENE
  R9W7C9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A024R4X3 UniProtKB/TrEMBL
  Q09155 UniProtKB/Swiss-Prot
  Q16337 UniProtKB/Swiss-Prot
  Q16338 UniProtKB/Swiss-Prot
  Q16339 UniProtKB/Swiss-Prot
  Q4ZG35 UniProtKB/Swiss-Prot
  Q96J49 UniProtKB/Swiss-Prot