IL12A-AS1 (IL12A antisense RNA 1)

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Gene: IL12A-AS1 (IL12A antisense RNA 1) Homo sapiens

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Symbol:

IL12A-AS1

Name:

IL12A antisense RNA 1

RGD ID:

7307971

HGNC Page

HGNC:49094

Description:

ASSOCIATED WITH AA amyloidosis; Abdominal pain; Abnormal blistering of the skin; INTERACTS WITH benzo[e]pyrene; methapyrilene

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

ILAS1-AS1

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	159,913,400 - 160,207,092 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	159,902,045 - 160,226,966 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	159,631,189 - 159,924,879 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	3	q25.33	NCBI
HuRef	3	157,027,688 - 157,323,600 (-)	NCBI		HuRef
CHM1_1	3	159,594,084 - 159,888,099 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	162,688,000 - 162,981,689 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

lung non-small cell carcinoma (EXP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

benzo[e]pyrene (EXP)

methapyrilene (EXP)

Phenotype Annotations Click to see Annotation Detail View

Human Phenotype

AA amyloidosis (IAGP)

Abdominal pain (IAGP)

Abnormal blistering of the skin (IAGP)

Abnormal myocardium morphology (IAGP)

Abnormal pyramidal sign (IAGP)

Acne (IAGP)

Anorexia (IAGP)

Aortic regurgitation (IAGP)

Arterial thrombosis (IAGP)

Arthralgia (IAGP)

Arthritis (IAGP)

Ataxia (IAGP)

Atypical behavior (IAGP)

Avascular necrosis (IAGP)

Blindness (IAGP)

Cataract (IAGP)

Cerebral ischemia (IAGP)

Confusion (IAGP)

Cranial nerve paralysis (IAGP)

Developmental regression (IAGP)

Diarrhea (IAGP)

Elevated circulating C-reactive protein concentration (IAGP)

Elevated erythrocyte sedimentation rate (IAGP)

Endocarditis (IAGP)

Epididymitis (IAGP)

Erythema nodosum (IAGP)

Fatigue (IAGP)

Fever (IAGP)

Gait disturbance (IAGP)

Gangrene (IAGP)

Gastrointestinal hemorrhage (IAGP)

Genital ulcers (IAGP)

Glomerulonephritis (IAGP)

Glomerulopathy (IAGP)

Headache (IAGP)

Hemiparesis (IAGP)

Hemoptysis (IAGP)

Hyperreflexia (IAGP)

Immunologic hypersensitivity (IAGP)

Increased inflammatory response (IAGP)

Increased intracranial pressure (IAGP)

Infectious encephalitis (IAGP)

Irritability (IAGP)

Keratoconjunctivitis sicca (IAGP)

Lymphadenopathy (IAGP)

Malabsorption (IAGP)

Memory impairment (IAGP)

Meningitis (IAGP)

Migraine (IAGP)

Mitral regurgitation (IAGP)

Myalgia (IAGP)

Myocardial infarction (IAGP)

Myocarditis (IAGP)

Myositis (IAGP)

Nausea and vomiting (IAGP)

Non-infectious meningitis (IAGP)

Nongranulomatous uveitis (IAGP)

Optic neuritis (IAGP)

Oral ulcer (IAGP)

Orchitis (IAGP)

Pancreatitis (IAGP)

Panuveitis (IAGP)

Papule (IAGP)

Paresthesia (IAGP)

Pericarditis (IAGP)

Photophobia (IAGP)

Pleural effusion (IAGP)

Pleuritis (IAGP)

Positive pathergy test (IAGP)

Pulmonary embolism (IAGP)

Pulmonary infiltrates (IAGP)

Pustule (IAGP)

Recurrent aphthous stomatitis (IAGP)

Recurrent fever (IAGP)

Renal insufficiency (IAGP)

Retinopathy (IAGP)

Retrobulbar optic neuritis (IAGP)

Seizure (IAGP)

Splenomegaly (IAGP)

Subcutaneous nodule (IAGP)

Superficial thrombophlebitis (IAGP)

Vasculitis (IAGP)

Venous thrombosis (IAGP)

Vertigo (IAGP)

Weight loss (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations

Additional References at PubMed

PMID:14702039	PMID:18311140	PMID:19458352	PMID:19525953	PMID:20190752	PMID:20639880	PMID:21399635	PMID:21833088	PMID:23291587	PMID:23377640	PMID:26097239

Genomics

Variants

Variants in IL12A-AS1
64 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
NR_108088.1(IL12A-AS1):n.518-76886C>T	single nucleotide variant	Lung cancer [RCV000093158]	Chr3:160102420 [GRCh38] Chr3:159820207 [GRCh37] Chr3:3q25.33	uncertain significance
NR_108088.1(IL12A-AS1):n.517+57010T>A	single nucleotide variant	Lung cancer [RCV000093159]	Chr3:160130188 [GRCh38] Chr3:159847975 [GRCh37] Chr3:3q25.33	uncertain significance
NR_108088.1(IL12A-AS1):n.517+35981C>A	single nucleotide variant	Lung cancer [RCV000093160]	Chr3:160151217 [GRCh38] Chr3:159869004 [GRCh37] Chr3:3q25.33	uncertain significance
NR_108088.1(IL12A-AS1):n.239-3449A>T	single nucleotide variant	Lung cancer [RCV000093161]	Chr3:160192383 [GRCh38] Chr3:159910170 [GRCh37] Chr3:3q25.33	uncertain significance
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3	copy number gain	See cases [RCV000134948]	Chr3:103426882..198110178 [GRCh38] Chr3:103145726..197837049 [GRCh37] Chr3:104628416..199321446 [NCBI36] Chr3:3q13.11-29	pathogenic
GRCh38/hg38 3q25.1-29(chr3:152100512-198118383)x3	copy number gain	See cases [RCV000139435]	Chr3:152100512..198118383 [GRCh38] Chr3:151818301..197845254 [GRCh37] Chr3:153300991..199329651 [NCBI36] Chr3:3q25.1-29	pathogenic
GRCh38/hg38 3q25.31-29(chr3:156321878-198113452)x3	copy number gain	See cases [RCV000140849]	Chr3:156321878..198113452 [GRCh38] Chr3:156039667..197840323 [GRCh37] Chr3:157522361..199324720 [NCBI36] Chr3:3q25.31-29	pathogenic
GRCh38/hg38 3q25.31-29(chr3:156118441-198125115)x3	copy number gain	See cases [RCV000142310]	Chr3:156118441..198125115 [GRCh38] Chr3:155836230..197851986 [GRCh37] Chr3:157318924..199336383 [NCBI36] Chr3:3q25.31-29	pathogenic
GRCh38/hg38 3q25.32-26.31(chr3:158141556-172788324)x3	copy number gain	See cases [RCV000051735]	Chr3:158141556..172788324 [GRCh38] Chr3:157859345..172506114 [GRCh37] Chr3:159342039..173988808 [NCBI36] Chr3:3q25.32-26.31	pathogenic
GRCh38/hg38 3q25.33-26.1(chr3:159748682-161533654)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051538]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051538]\|See cases [RCV000051538]	Chr3:159748682..161533654 [GRCh38] Chr3:159466471..161251442 [GRCh37] Chr3:160949165..162734136 [NCBI36] Chr3:3q25.33-26.1	uncertain significance
GRCh38/hg38 3q22.3-29(chr3:137126982-198110178)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051723]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051723]\|See cases [RCV000051723]	Chr3:137126982..198110178 [GRCh38] Chr3:136845824..197837049 [GRCh37] Chr3:138328514..199321446 [NCBI36] Chr3:3q22.3-29	pathogenic
GRCh38/hg38 3q24-26.32(chr3:147442566-178522531)x3	copy number gain	See cases [RCV000051724]	Chr3:147442566..178522531 [GRCh38] Chr3:147160353..178240319 [GRCh37] Chr3:148643043..179723013 [NCBI36] Chr3:3q24-26.32	pathogenic
GRCh38/hg38 3q24-29(chr3:147521892-198096565)x3	copy number gain	See cases [RCV000051725]	Chr3:147521892..198096565 [GRCh38] Chr3:147239679..197823436 [GRCh37] Chr3:148722369..199307833 [NCBI36] Chr3:3q24-29	pathogenic
GRCh38/hg38 3q25.31-29(chr3:157293378-198134727)x3	copy number gain	See cases [RCV000051726]	Chr3:157293378..198134727 [GRCh38] Chr3:157011167..197861598 [GRCh37] Chr3:158493861..199345995 [NCBI36] Chr3:3q25.31-29	pathogenic
GRCh38/hg38 3q25.33(chr3:160060060-160985414)x1	copy number loss	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053998]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053998]\|See cases [RCV000053998]	Chr3:160060060..160985414 [GRCh38] Chr3:159777847..160703202 [GRCh37] Chr3:161260541..162185896 [NCBI36] Chr3:3q25.33	uncertain significance
NM_001397992.1(IL12A):c.204G>A (p.Glu68=)	single nucleotide variant	not provided [RCV000940907]	Chr3:159993053 [GRCh38] Chr3:159710840 [GRCh37] Chr3:3q25.33	likely benign
NM_001397992.1(IL12A):c.465A>G (p.Leu155=)	single nucleotide variant	not provided [RCV000903732]	Chr3:159993805 [GRCh38] Chr3:159711592 [GRCh37] Chr3:3q25.33	benign
NM_001397992.1(IL12A):c.558G>A (p.Pro186=)	single nucleotide variant	not provided [RCV000894506]	Chr3:159995457 [GRCh38] Chr3:159713244 [GRCh37] Chr3:3q25.33	benign
NM_001397992.1(IL12A):c.557C>T (p.Pro186Leu)	single nucleotide variant	not provided [RCV000886126]	Chr3:159995456 [GRCh38] Chr3:159713243 [GRCh37] Chr3:3q25.33	likely benign
NM_001397992.1(IL12A):c.529G>A (p.Val177Met)	single nucleotide variant	not provided [RCV000880217]	Chr3:159995428 [GRCh38] Chr3:159713215 [GRCh37] Chr3:3q25.33	benign
NM_001397992.1(IL12A):c.130C>G (p.Leu44Val)	single nucleotide variant	not specified [RCV004152532]	Chr3:159990280 [GRCh38] Chr3:159708067 [GRCh37] Chr3:3q25.33	uncertain significance
NM_001397992.1(IL12A):c.250G>A (p.Ala84Thr)	single nucleotide variant	not specified [RCV004173708]	Chr3:159993099 [GRCh38] Chr3:159710886 [GRCh37] Chr3:3q25.33	uncertain significance
NM_001397992.1(IL12A):c.86C>A (p.Thr29Asn)	single nucleotide variant	not specified [RCV004096255]	Chr3:159990236 [GRCh38] Chr3:159708023 [GRCh37] Chr3:3q25.33	uncertain significance
NM_001397992.1(IL12A):c.-86C>T	single nucleotide variant	not specified [RCV004278075]	Chr3:159989073 [GRCh38] Chr3:159706860 [GRCh37] Chr3:3q25.33	uncertain significance
NM_001397992.1(IL12A):c.409G>A (p.Glu137Lys)	single nucleotide variant	not specified [RCV004345291]	Chr3:159993749 [GRCh38] Chr3:159711536 [GRCh37] Chr3:3q25.33	uncertain significance
NM_001397992.1(IL12A):c.337T>A (p.Ser113Thr)	single nucleotide variant	not specified [RCV004404930]	Chr3:159993586 [GRCh38] Chr3:159711373 [GRCh37] Chr3:3q25.33	uncertain significance
NM_001397992.1(IL12A):c.-57G>A	single nucleotide variant	not specified [RCV004404931]	Chr3:159989102 [GRCh38] Chr3:159706889 [GRCh37] Chr3:3q25.33	likely benign
NM_001397992.1(IL12A):c.475A>G (p.Met159Val)	single nucleotide variant	not specified [RCV004404932]	Chr3:159993815 [GRCh38] Chr3:159711602 [GRCh37] Chr3:3q25.33	uncertain significance
NM_001397992.1(IL12A):c.77C>T (p.Pro26Leu)	single nucleotide variant	not specified [RCV004627923]	Chr3:159990227 [GRCh38] Chr3:159708014 [GRCh37] Chr3:3q25.33	uncertain significance

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	257
Count of miRNA genes:	241
Interacting mature miRNAs:	247
Transcripts:	ENST00000462431, ENST00000486168, ENST00000497452
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCh38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
407180101	GWAS829077_H	Oral ulcer QTL GWAS829077 (human)		6e-16	Oral ulcer		3	160026651	160026652	Human
406895553	GWAS544529_H	Sjogren syndrome QTL GWAS544529 (human)		1e-10	Sjogren syndrome		3	160001345	160001346	Human
407128898	GWAS777874_H	multiple sclerosis QTL GWAS777874 (human)		0.000006	multiple sclerosis		3	159981157	159981158	Human
407111747	GWAS760723_H	eosinophil count QTL GWAS760723 (human)		2e-09	eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	3	159919889	159919890	Human
407116366	GWAS765342_H	mean corpuscular volume QTL GWAS765342 (human)		2e-10	mean corpuscular volume	mean corpuscular volume (CMO:0000038)	3	160130712	160130713	Human
406915018	GWAS563994_H	systemic lupus erythematosus QTL GWAS563994 (human)		1e-10	systemic lupus erythematosus		3	160011272	160011273	Human
407025609	GWAS674585_H	celiac disease QTL GWAS674585 (human)		4e-28	celiac disease		3	159947262	159947263	Human
407033289	GWAS682265_H	systemic lupus erythematosus QTL GWAS682265 (human)		5e-25	systemic lupus erythematosus		3	160028076	160028077	Human
407098056	GWAS747032_H	Oral ulcer QTL GWAS747032 (human)		7e-47	Oral ulcer		3	159997764	159997765	Human
406889293	GWAS538269_H	systemic scleroderma QTL GWAS538269 (human)		1e-11	systemic scleroderma		3	159976265	159976266	Human
406983373	GWAS632349_H	systemic scleroderma QTL GWAS632349 (human)		2e-10	systemic scleroderma		3	160015740	160015741	Human
407220042	GWAS869018_H	lymphocyte count QTL GWAS869018 (human)		2e-10	lymphocyte count	blood lymphocyte count (CMO:0000031)	3	159919889	159919890	Human
406889299	GWAS538275_H	systemic scleroderma QTL GWAS538275 (human)		2e-08	systemic scleroderma		3	159976265	159976266	Human
407242579	GWAS891555_H	primary biliary cirrhosis QTL GWAS891555 (human)		2e-55	primary biliary cirrhosis		3	160015740	160015741	Human
406974681	GWAS623657_H	systemic lupus erythematosus QTL GWAS623657 (human)		6e-11	systemic lupus erythematosus		3	159976265	159976266	Human
406980058	GWAS629034_H	biliary liver cirrhosis QTL GWAS629034 (human)		2e-16	biliary liver cirrhosis		3	160028076	160028077	Human
406983256	GWAS632232_H	myeloproliferative disorder QTL GWAS632232 (human)		8e-11	myeloproliferative disorder		3	159915672	159915673	Human
406889179	GWAS538155_H	primary biliary cirrhosis QTL GWAS538155 (human)		0.000005	primary biliary cirrhosis		3	160018698	160018699	Human
407142751	GWAS791727_H	multiple sclerosis QTL GWAS791727 (human)		1e-18	multiple sclerosis		3	159973324	159973325	Human
406889821	GWAS538797_H	primary biliary cirrhosis QTL GWAS538797 (human)		3e-35	primary biliary cirrhosis		3	160018698	160018699	Human
407002077	GWAS651053_H	monocyte count QTL GWAS651053 (human)		2e-12	monocyte quantity (VT:0000223)	blood monocyte count (CMO:0000032)	3	160205516	160205517	Human
407077084	GWAS726060_H	primary biliary cirrhosis QTL GWAS726060 (human)		0.000001	primary biliary cirrhosis		3	159945506	159945507	Human
406974305	GWAS623281_H	systemic lupus erythematosus QTL GWAS623281 (human)		2e-09	systemic lupus erythematosus		3	160011200	160011201	Human
407346151	GWAS995127_H	lymphocyte count QTL GWAS995127 (human)		3e-08	lymphocyte count	blood lymphocyte count (CMO:0000031)	3	159970797	159970798	Human
406961508	GWAS610484_H	fat body mass QTL GWAS610484 (human)		0.0000004	body fat mass (VT:0010482)	total body fat mass (CMO:0000305)	3	160188474	160188475	Human
1300026	BP36_H	Blood pressure QTL 36 (human)	4.04		Blood pressure	hypertension susceptibility	3	135720453	161720453	Human
407335401	GWAS984377_H	monocyte count QTL GWAS984377 (human)		2e-08	monocyte quantity (VT:0000223)	blood monocyte count (CMO:0000032)	3	160205755	160205756	Human
406889199	GWAS538175_H	systemic scleroderma QTL GWAS538175 (human)		0.000009	systemic scleroderma		3	159976265	159976266	Human
407300598	GWAS949574_H	lymphocyte count QTL GWAS949574 (human)		2e-11	lymphocyte count	blood lymphocyte count (CMO:0000031)	3	159975782	159975783	Human
406889201	GWAS538177_H	limited scleroderma QTL GWAS538177 (human)		2e-11	limited scleroderma		3	159976265	159976266	Human
407347829	GWAS996805_H	multiple sclerosis QTL GWAS996805 (human)		0.0000005	multiple sclerosis		3	160016881	160016882	Human
406974837	GWAS623813_H	Behcet's syndrome QTL GWAS623813 (human)		1e-10	Behcet's syndrome		3	159947262	159947263	Human
407260145	GWAS909121_H	sarcoidosis QTL GWAS909121 (human)		0.000008	sarcoidosis		3	159931427	159931428	Human
407056895	GWAS705871_H	eosinophil count QTL GWAS705871 (human)		3e-14	eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	3	159919889	159919890	Human
407009025	GWAS658001_H	primary biliary cirrhosis QTL GWAS658001 (human)		1e-17	primary biliary cirrhosis		3	160013032	160013033	Human
407242757	GWAS891733_H	primary biliary cirrhosis QTL GWAS891733 (human)		2e-52	primary biliary cirrhosis		3	160015740	160015741	Human
406987022	GWAS635998_H	Oral ulcer QTL GWAS635998 (human)		4e-483	Oral ulcer		3	159919889	159919890	Human
407024526	GWAS673502_H	unipolar depression QTL GWAS673502 (human)		0.000001	unipolar depression		3	159926508	159926509	Human
406907405	GWAS556381_H	bipolar disorder QTL GWAS556381 (human)		0.000005	bipolar disorder		3	160083194	160083195	Human
407008268	GWAS657244_H	celiac disease QTL GWAS657244 (human)		7e-29	celiac disease		3	159929885	159929886	Human
406909071	GWAS558047_H	systemic lupus erythematosus QTL GWAS558047 (human)		0.000001	systemic lupus erythematosus		3	160011200	160011201	Human
407250066	GWAS899042_H	lymphocyte count QTL GWAS899042 (human)		2e-12	lymphocyte count	blood lymphocyte count (CMO:0000031)	3	159919889	159919890	Human
407382428	GWAS1031404_H	multiple sclerosis QTL GWAS1031404 (human)		5e-08	multiple sclerosis		3	159994586	159994587	Human
407108374	GWAS757350_H	primary biliary cirrhosis QTL GWAS757350 (human)		1e-23	primary biliary cirrhosis		3	160028076	160028077	Human
407204883	GWAS853859_H	cortical surface area measurement QTL GWAS853859 (human)		2e-08	cerebral cortex morphology trait (VT:0000788)	tibia-fibula cortical bone total cross-sectional area (CMO:0001721)	3	159936737	159936738	Human
407142172	GWAS791148_H	primary biliary cirrhosis QTL GWAS791148 (human)		4e-22	primary biliary cirrhosis		3	160018698	160018699	Human
406982811	GWAS631787_H	multiple sclerosis QTL GWAS631787 (human)		0.000007	multiple sclerosis		3	159991864	159991865	Human
407039256	GWAS688232_H	systemic scleroderma QTL GWAS688232 (human)		8e-10	systemic scleroderma		3	160015740	160015741	Human
406996894	GWAS645870_H	body mass index QTL GWAS645870 (human)		2e-12	body mass index	body mass index (BMI) (CMO:0000105)	3	160028076	160028077	Human
407007262	GWAS656238_H	monocyte count QTL GWAS656238 (human)		1e-11	monocyte quantity (VT:0000223)	blood monocyte count (CMO:0000032)	3	160205516	160205517	Human
406889248	GWAS538224_H	primary biliary cirrhosis QTL GWAS538224 (human)		6e-17	primary biliary cirrhosis		3	159921870	159921871	Human
406994978	GWAS643954_H	Oral ulcer QTL GWAS643954 (human)		2e-30	Oral ulcer		3	160146189	160146190	Human
407033506	GWAS682482_H	autoimmune disease QTL GWAS682482 (human)		2e-29	autoimmune disease		3	159929885	159929886	Human
407152804	GWAS801780_H	Behcet's syndrome QTL GWAS801780 (human)		3e-12	Behcet's syndrome		3	159919889	159919890	Human
407093666	GWAS742642_H	metabolite measurement QTL GWAS742642 (human)		0.0000009	metabolite measurement		3	159977460	159977461	Human
406889250	GWAS538226_H	primary biliary cirrhosis QTL GWAS538226 (human)		5e-09	primary biliary cirrhosis		3	159997764	159997765	Human
406952610	GWAS601586_H	wellbeing measurement QTL GWAS601586 (human)		0.000002	wellbeing measurement		3	160181944	160181945	Human
406994470	GWAS643446_H	Oral ulcer QTL GWAS643446 (human)		1e-79	Oral ulcer		3	159968881	159968882	Human
406994983	GWAS643959_H	Oral ulcer QTL GWAS643959 (human)		6e-39	Oral ulcer		3	159927882	159927883	Human
406900262	GWAS549238_H	tonsillectomy risk measurement QTL GWAS549238 (human)		0.0000004	tonsillectomy risk measurement		3	160106004	160106005	Human
406889256	GWAS538232_H	primary biliary cirrhosis QTL GWAS538232 (human)		2e-09	primary biliary cirrhosis		3	160018698	160018699	Human
406994472	GWAS643448_H	Oral ulcer QTL GWAS643448 (human)		1e-31	Oral ulcer		3	159973737	159973738	Human
407243052	GWAS892028_H	primary biliary cirrhosis QTL GWAS892028 (human)		0.000001	primary biliary cirrhosis		3	159959511	159959512	Human
406947498	GWAS596474_H	Behcet's syndrome QTL GWAS596474 (human)		2e-08	Behcet's syndrome		3	160011868	160011869	Human
406969386	GWAS618362_H	educational attainment QTL GWAS618362 (human)		5e-08	educational attainment		3	160175874	160175875	Human
406913197	GWAS562173_H	celiac disease QTL GWAS562173 (human)		8e-08	celiac disease		3	159957140	159957141	Human
407141032	GWAS790008_H	primary biliary cirrhosis QTL GWAS790008 (human)		2e-11	primary biliary cirrhosis		3	159992311	159992312	Human
406889263	GWAS538239_H	primary biliary cirrhosis QTL GWAS538239 (human)		5e-10	primary biliary cirrhosis		3	160018698	160018699	Human
406889264	GWAS538240_H	primary biliary cirrhosis QTL GWAS538240 (human)		2e-14	primary biliary cirrhosis		3	160018698	160018699	Human
407025074	GWAS674050_H	biliary liver cirrhosis QTL GWAS674050 (human)		8e-12	biliary liver cirrhosis		3	160011091	160011092	Human
407176759	GWAS825735_H	multiple sclerosis QTL GWAS825735 (human)		3e-28	multiple sclerosis		3	159973324	159973325	Human
407025078	GWAS674054_H	celiac disease QTL GWAS674054 (human)		1e-09	celiac disease		3	159947262	159947263	Human
406892856	GWAS541832_H	monocyte count QTL GWAS541832 (human)		1e-09	monocyte quantity (VT:0000223)	blood monocyte count (CMO:0000032)	3	160205789	160205790	Human
407028026	GWAS677002_H	Behcet's syndrome QTL GWAS677002 (human)		0.0000006	Behcet's syndrome		3	159947262	159947263	Human
1298415	BP24_H	Blood pressure QTL 24 (human)	2.9		Blood pressure	hypertension susceptibility	3	135720453	161720453	Human
407060927	GWAS709903_H	systemic lupus erythematosus QTL GWAS709903 (human)		5e-08	systemic lupus erythematosus		3	159992603	159992604	Human
407020607	GWAS669583_H	biliary liver cirrhosis QTL GWAS669583 (human)		2e-14	biliary liver cirrhosis		3	160011091	160011092	Human

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system
775	1965	1514	1165	3641	839	1512	3	207	1002	96	1480	3717	3558	52	2995	460	1331	1238	123

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_108088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC010370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC026118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC112641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK097161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KF457705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KF510839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KF510840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA988036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA988037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000462431

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,998,174 - 160,015,861 (-)	Ensembl

Ensembl Acc Id:

ENST00000486168

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	160,206,509 - 160,225,299 (-)	Ensembl

Ensembl Acc Id:

ENST00000497452

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,913,400 - 160,207,092 (-)	Ensembl

Ensembl Acc Id:

ENST00000642756

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,909,382 - 160,039,275 (-)	Ensembl

Ensembl Acc Id:

ENST00000654530

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,912,552 - 160,039,218 (-)	Ensembl

Ensembl Acc Id:

ENST00000656481

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,912,270 - 160,039,203 (-)	Ensembl

Ensembl Acc Id:

ENST00000659957

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,913,451 - 160,039,233 (-)	Ensembl

Ensembl Acc Id:

ENST00000660728

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,997,609 - 160,038,978 (-)	Ensembl

Ensembl Acc Id:

ENST00000661085

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,913,422 - 160,039,115 (-)	Ensembl

Ensembl Acc Id:

ENST00000662594

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,913,451 - 160,039,176 (-)	Ensembl

Ensembl Acc Id:

ENST00000663549

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,989,147 - 160,009,214 (-)	Ensembl

Ensembl Acc Id:

ENST00000664175

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,996,961 - 160,039,147 (-)	Ensembl

Ensembl Acc Id:

ENST00000666425

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,902,045 - 160,038,958 (-)	Ensembl

Ensembl Acc Id:

ENST00000671614

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,997,569 - 160,025,503 (-)	Ensembl

Ensembl Acc Id:

ENST00000726628

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	160,211,894 - 160,225,379 (-)	Ensembl

Ensembl Acc Id:

ENST00000726629

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	160,225,006 - 160,226,966 (-)	Ensembl

Ensembl Acc Id:

ENST00000740375

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,904,128 - 160,038,993 (-)	Ensembl

Ensembl Acc Id:

ENST00000740376

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,933,277 - 160,039,084 (-)	Ensembl

Ensembl Acc Id:

ENST00000740377

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,933,275 - 160,039,059 (-)	Ensembl

Ensembl Acc Id:

ENST00000740378

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,961,884 - 160,039,174 (-)	Ensembl

Ensembl Acc Id:

ENST00000740379

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,914,110 - 159,979,520 (-)	Ensembl

Ensembl Acc Id:

ENST00000740380

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,996,960 - 160,039,291 (-)	Ensembl

Ensembl Acc Id:

ENST00000740381

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,996,963 - 160,039,237 (-)	Ensembl

Ensembl Acc Id:

ENST00000740382

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,997,586 - 160,039,233 (-)	Ensembl

Ensembl Acc Id:

ENST00000740383

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,997,586 - 160,039,059 (-)	Ensembl

Ensembl Acc Id:

ENST00000740384

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,997,586 - 160,038,996 (-)	Ensembl

Ensembl Acc Id:

ENST00000740385

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,997,581 - 160,038,978 (-)	Ensembl

Ensembl Acc Id:

ENST00000740386

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	159,998,159 - 160,039,073 (-)	Ensembl

Ensembl Acc Id:

ENST00000740387

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	160,008,969 - 160,039,198 (-)	Ensembl

Ensembl Acc Id:

ENST00000740388

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	160,008,988 - 160,039,204 (-)	Ensembl

Ensembl Acc Id:

ENST00000740389

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	160,008,990 - 160,039,059 (-)	Ensembl

Ensembl Acc Id:

ENST00000740390

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	160,008,990 - 160,039,059 (-)	Ensembl

Ensembl Acc Id:

ENST00000740391

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	160,008,979 - 160,039,013 (-)	Ensembl

Ensembl Acc Id:

ENST00000740392

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	160,008,978 - 160,038,950 (-)	Ensembl

RefSeq Acc Id:

NR_108088

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	159,913,400 - 160,207,092 (-)	NCBI
HuRef	3	157,027,688 - 157,323,600 (-)	NCBI
CHM1_1	3	159,594,084 - 159,888,099 (-)	NCBI
T2T-CHM13v2.0	3	162,688,000 - 162,981,689 (-)	NCBI

Sequence:

show sequence

AGCTCTTTAGGATCCTCCTTGCTTGATAACAGAATCACTTTCTTTCTTACGTTTGTCATCCAGA
AGTCTAAAGTCAGTAGCAGTAATGGAAAGTTGGGCTAATGTGGAGATATTCCAAACAGAGCAAG
AGCAAATGGGATTCTTGGCTTGTCTCTCATCGTGATCCTGATTGAAGACCACTGGACACATCTG
TCAAGACTCTAACCGCAATCCATTGGAAATCACTGGAGAGCCAAAGGAAATGAAGTCTCAGACA
TATTGTCCAGGCTGGAATGTAGCGGCTATTCACAGGCATGATCATAGTGCACTACAGCCTCAAA
CTCCTGGGCTCAAGCAATCCTCCCATCTCAATGTCCGGAGTAGCTGGGACTACAGATGTGTGTT
AGCGGCTATGGCAGCCATCTTGTGACCAGGAGGAAGCTTCTGAGAATCACAGAGATGCAACCTC
TGAAGCTGCCAAACCACTGCCAGCAGCTGCCTAACCACTGCCAGCAGCTGCCTATCTCCAGACA
TCTTGGTTGGTCTAATTGAAGGCAATGGAGAAGTAAGTCTTTATGGATCAAAATCTTAGCTCTA
GAAAAGGCCTAAGGCAATAGCTAATTGAGACTATGCATCACTATTAAGGCATCTTCACTAAAGG
GCGCTGTGGAAACGCTGCCTGAGATGCAGACACCTGTCAGAAGGGGGCTAAATTTCAAACAAGG
AACGTGGTGTTGCATCACAATAAATAGATACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGA
TCTCCTGACTTCATGATTCACATGCCTCGGCCTCCCAAAGTGCTGGGATTACAGAACAGAAGAA
ACACACGTGTTCTTGTGTGTAAACCCAGTCCATGGAAGAGACCGTCTGCTTGTCCCTCCTGATC
TCTGGGCCCAGACAACCAGTAGTCACCATTCCAAGTGAGGGGTGGCTGCAACTCTACAGCCCCG
TTCGTCTCTCCTCACTGTCAAAGCTGCTGAGACCCCAGACTCGACACTTGAAAGAAACCCATGT
CTGTGAAGCACTTGTGGACCATTCAAGATTGTGGAAGAATCACTCAAGAGAAGGAGATAGCAAT
ATTTGCAGATATGCAAACTGGCCCCTTGCATGCACATCCTGGAGCACGTCCTGGAGCCTTTAGA
GGAGACGGCTGCTGCTGTTCCAGTCTCTCCTTAGGCAGACTTGAGTTTCTACCCACTCTTCCCA
AGCAGCCGCCCCTCCGCACCCGAGCGAGCCAAAGACCTGGCGGGCTGAGTACTCACTGCGCGCT
GGACACATGCTGAGCCGGCACTGCAGGGACACAGGGCGAGCCGCTGGATGCAGACCTGTGGCCG
CGGCAGTTGGGCTTATCTTGCCCATGAAGTTGCCTCTGAAGAACCAAGTCCAACTGTGTATGCT
GAGAGATGTCTGGCTACTTCCTGATTGACAGTTCTGGCAAGGTGGCATTGGGCCCTGGCTTTTC
CTCTGGAGGCATCATCACTTATAGGAAAATGTCCCCTGAAGTCCAAGGATCAAAGCTGCTGGAA
CACTGAGAAGCTGAACAAAGGAGAACTGTTTCTCATCAAACCCAGACTTCCAGACTTCCAATAG
GGTAGAATGAGCAAGTCAGCAAATCATCTTCCTTGGAAACAGTGATAAAACTAGATGACATTGT
CAACAACAGCCATTTCAGAAATCTAGAAAATGACCAAAGGCAAACAACAAACTGAGAAGCATTT
TTTTTTCCATGAAAAATCGCTCTATTTCTGCAAAAATAGTGGGAGTCTATGGCTTCTCATCCAG
GGCTGTTTCTCTCCCCACCCCAGCTCAGTCAGTACAAAGGTTCTGGCAGCATGAGGCAGACTGA
ACAGACCTGAAGTTTGATTGCTGGAAGAAACTGACTCCAGGTTTGGCAGAGGGTGAGAAACCTA
CTCCCAGCCATGTTGTCTGGTGACACAGTGACCTTAGGGACAAGTGAATAGGGAAGGCCAGTGA
TTCATTAACCTGAGGTTGCAGTCCTGGTTGGGGAAAGCATCAGAATGGCAGATAAGCTAGAAAT
TTAGTAGGGATATGCTGGAAATGAGACAACCCCAAAGGGGCTTGACCCCAAAGTTGTCCACACA
CCCCAGCTGCCTTCTGAGCAGATGTAGGGAGAGACCAGAGAAGGCCTAGGCTATCCACACATCT
CTGGCTAACCCAGGCTGTAAACCTGTGGAGGAGACACAAGAGGTGGATTGATTGCTAATGGGCA
TATGGGGGATCTTACTGGTTGATAGGAACATTCTCAAATTGGATTGTGGTGATGCTTGCACAAC
TCTAAGTTTATCCCAAATTGCTAAATTTTACACTAAAAAGGGGTGAACTTTAGGGTATATAAAT
TATACATCAATAAAGTTGTCATAAAGCATTCACATTCTAATAAATGGCTCTAAGAAA

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	IL12A-AS1	COSMIC
Ensembl Genes	ENSG00000244040	Ensembl, ENTREZGENE
Ensembl Transcript	ENST00000497452	ENTREZGENE
GTEx	ENSG00000244040	GTEx
HGNC ID	HGNC:49094	ENTREZGENE
Human Proteome Map	IL12A-AS1	Human Proteome Map
NCBI Gene	IL12A-AS1	ENTREZGENE
RNAcentral	URS0000521E93	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Human Phenotype Annotations - HPO

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Imported Disease Annotations - CTD

Imported Human Phenotype Annotations - HPO