Acbd3 (acyl-CoA binding domain containing 3)

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Gene: Acbd3 (acyl-CoA binding domain containing 3) Rattus norvegicus

Analyze

Symbol:

Acbd3

Name:

acyl-CoA binding domain containing 3

RGD ID:

727851

Description:

Predicted to have protein kinase A regulatory subunit binding activity. Predicted to be involved in steroid biosynthetic process. Localizes to Golgi membrane. Orthologous to human ACBD3 (acyl-CoA binding domain containing 3); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

acyl-CoA-binding domain-containing protein 3; acyl-Coenzyme A binding domain containing 3; DAP; DMT1-associated protein; GOCAP1; golgi complex-associated protein 1; golgi phosphoprotein 1; golgi resident protein GCP60; GOLPH1; LOC289312; neurotrophin receptor alike death domain protein; p75-like apoptosis-inducing death domain protein

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ACBD3 (acyl-CoA binding domain containing 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Acbd3 (acyl-Coenzyme A binding domain containing 3)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Acbd3 (acyl-CoA binding domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ACBD3 (acyl-CoA binding domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ACBD3 (acyl-CoA binding domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Acbd3 (acyl-CoA binding domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ACBD3 (acyl-CoA binding domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	ACBD3 (acyl-CoA binding domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Acbd3 (acyl-CoA binding domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ACBD3 (acyl-CoA binding domain containing 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Acbd3 (acyl-Coenzyme A binding domain containing 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG14232	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	Y41E3.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	92,455,813 - 92,484,556 (+)	NCBI
Rnor_6.0 Ensembl	13	99,004,942 - 99,035,519 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	13	99,004,942 - 99,035,520 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	13	104,006,998 - 104,036,981 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	96,461,327 - 96,490,328 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	13	96,650,262 - 96,679,260 (+)	NCBI
Celera	13	92,001,461 - 92,029,998 (+)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

parathyroid carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP,ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

aconitine (EXP)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

carbon nanotube (ISO)

chloroprene (EXP)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dibutyl phthalate (ISO)

Enterolactone (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fluoranthene (ISO)

flutamide (EXP)

folic acid (ISO)

hydrogen peroxide (ISO)

iron atom (EXP)

iron(0) (EXP)

ketamine (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-nitrosodiethylamine (EXP)

nitric oxide (EXP)

oxybenzone (EXP)

p-toluidine (EXP)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

propiconazole (ISO)

sunitinib (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

tetrahydropalmatine (ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

tunicamycin (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

steroid biosynthetic process (IEA)

Cellular Component

Golgi apparatus (ISO)

Golgi membrane (IBA,IDA,IEA,ISO)

mitochondrion (IEA)

Molecular Function

fatty-acyl-CoA binding (IEA)

protein binding (ISO)

protein kinase A regulatory subunit binding (IEA,ISO)

References

References - curated


1.	Blanco EH, etal., Neuropeptides. 2011 Aug;45(4):273-9. doi: 10.1016/j.npep.2011.05.002. Epub 2011 May 31.
2.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	MGD data from the GO Consortium
4.	NCBI rat LocusLink and RefSeq merged data October 15, 2003
5.	RGD automated data pipeline
6.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:17911601	PMID:19946888	PMID:27009356	PMID:30361391

Genomics

Comparative Map Data

Acbd3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	92,455,813 - 92,484,556 (+)	NCBI
Rnor_6.0 Ensembl	13	99,004,942 - 99,035,519 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	13	99,004,942 - 99,035,520 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	13	104,006,998 - 104,036,981 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	96,461,327 - 96,490,328 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	13	96,650,262 - 96,679,260 (+)	NCBI
Celera	13	92,001,461 - 92,029,998 (+)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

ACBD3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	226,144,679 - 226,186,741 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	226,144,679 - 226,186,741 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	226,332,380 - 226,374,442 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	224,399,003 - 224,441,046 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	222,639,116 - 222,681,158	NCBI
Celera	1	199,523,027 - 199,565,088 (-)	NCBI
Cytogenetic Map	1	q42.12	NCBI
HuRef	1	196,849,546 - 196,891,524 (-)	NCBI		HuRef
CHM1_1	1	227,605,141 - 227,647,173 (-)	NCBI		CHM1_1

Acbd3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	180,553,608 - 180,581,769 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	1	180,553,608 - 180,581,769 (+)	Ensembl
GRCm38	1	180,726,043 - 180,754,204 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	180,726,043 - 180,754,204 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	182,656,174 - 182,684,335 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	1	182,562,718 - 182,590,840 (+)	NCBI			mm8
Celera	1	187,789,212 - 187,816,898 (+)	NCBI		Celera
Cytogenetic Map	1	H4	NCBI
cM Map	1	84.46	NCBI

Acbd3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955489	339,561 - 381,496 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955489	337,578 - 381,557 (-)	NCBI	ChiLan1.0	ChiLan1.0

ACBD3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	206,601,100 - 206,641,355 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	206,603,023 - 206,641,311 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	201,606,028 - 201,646,107 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ACBD3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	38,713,729 - 38,733,138 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	38,714,592 - 38,731,558 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	38,171,477 - 38,213,155 (+)	NCBI
ROS_Cfam_1.0	7	38,523,648 - 38,566,134 (+)	NCBI
UMICH_Zoey_3.1	7	38,362,436 - 38,404,682 (+)	NCBI
UNSW_CanFamBas_1.0	7	38,369,163 - 38,411,384 (+)	NCBI
UU_Cfam_GSD_1.0	7	38,640,120 - 38,682,380 (+)	NCBI

Acbd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	51,792,205 - 51,829,544 (+)	NCBI
SpeTri2.0	NW_004936526	2,917,792 - 2,955,072 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ACBD3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	14,031,020 - 14,069,518 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	14,032,370 - 14,049,598 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ACBD3
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	3,585,619 - 3,630,711 (+)	NCBI
ChlSab1.1 Ensembl	25	3,585,625 - 3,628,789 (+)	Ensembl

Acbd3
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624807	265,519 - 301,383 (-)	NCBI

Position Markers

RH125959

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	92,484,302 - 92,484,525 (+)	MAPPER
Rnor_6.0	13	99,035,267 - 99,035,489	NCBI	Rnor6.0
Rnor_5.0	13	104,036,728 - 104,036,950	UniSTS	Rnor5.0
RGSC_v3.4	13	96,490,075 - 96,490,297	UniSTS	RGSC3.4
Celera	13	92,029,745 - 92,029,967	UniSTS
Cytogenetic Map	13	q26	UniSTS

BE120590

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	92,475,485 - 92,475,654 (+)	MAPPER
Rnor_6.0	13	99,026,453 - 99,026,621	NCBI	Rnor6.0
Rnor_5.0	13	104,027,914 - 104,028,082	UniSTS	Rnor5.0
RGSC_v3.4	13	96,481,261 - 96,481,429	UniSTS	RGSC3.4
Celera	13	92,020,931 - 92,021,099	UniSTS
RH 3.4 Map	13	625.8	UniSTS
Cytogenetic Map	13	q26	UniSTS

AI234525

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	92,484,373 - 92,484,488 (+)	MAPPER
Rnor_6.0	13	99,035,338 - 99,035,452	NCBI	Rnor6.0
Rnor_5.0	13	104,036,799 - 104,036,913	UniSTS	Rnor5.0
RGSC_v3.4	13	96,490,146 - 96,490,260	UniSTS	RGSC3.4
Celera	13	92,029,816 - 92,029,930	UniSTS
RH 3.4 Map	13	627.7	UniSTS
Cytogenetic Map	13	q26	UniSTS

C76375

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	92,484,377 - 92,484,486 (+)	MAPPER
Rnor_6.0	13	99,035,342 - 99,035,450	NCBI	Rnor6.0
Rnor_5.0	13	104,036,803 - 104,036,911	UniSTS	Rnor5.0
RGSC_v3.4	13	96,490,150 - 96,490,258	UniSTS	RGSC3.4
Celera	13	92,029,820 - 92,029,928	UniSTS
Cytogenetic Map	13	q26	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	107975663	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	107975663	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	1	107975663	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	12193394	108478121	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	24502279	108770533	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	35301263	107975663	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	36147533	99968921	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	36147533	99968921	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	36147533	99968921	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	36147533	99968921	Rat
1641901	Alcrsp6	Alcohol response QTL 6			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	13	57903612	102903612	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	62975663	107975663	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	66971778	111971778	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	71230858	114033958	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	71230858	114033958	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	72583716	114033958	Rat
10755455	Coatc13	Coat color QTL 13		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	77694986	114033958	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	79567081	103613733	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	80403559	108770687	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	86833393	114033958	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	89
Count of miRNA genes:	69
Interacting mature miRNAs:	84
Transcripts:	ENSRNOT00000004293
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	35	47	32	19	32	1	3	66	30	36	11	1
Low		8	10	9		9	7	8	8	5	5		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_182843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY336075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000004293 ⟹ ENSRNOP00000004293

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	99,005,142 - 99,034,361 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000085390 ⟹ ENSRNOP00000074070

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	99,004,942 - 99,035,519 (+)	Ensembl

RefSeq Acc Id:

NM_182843 ⟹ NP_878263

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	92,455,813 - 92,484,556 (+)	NCBI
Rnor_6.0	13	99,004,942 - 99,035,520 (+)	NCBI
Rnor_5.0	13	104,006,998 - 104,036,981 (+)	NCBI
RGSC_v3.4	13	96,461,327 - 96,490,328 (+)	RGD
Celera	13	92,001,461 - 92,029,998 (+)	RGD

Sequence:

show sequence

GCAGGAAGTCGATACGTGGCCGCCGCCTGTCCCCGCCGAGGAGGCGCTGCGAGCGGAGATGGCG
GCGCAGCTGAACGTAGAGCAACTTGAGGTGTCGCTCGACGGCCTCACGCTGAGCCCGGATTCAG
AGGAGCGGCCCGGCGCGGAGGGTGCCCCGCTGCAGACGCCGCCGTCCTCGCCCCCCCGGGATGG
ACTGGGCTCCGGCACAGCGGGACAGCAGCGGGAGCCCGGGGAGGCGGCGGCTGAGGGCGCGGCC
GAGGAGGCGCGGCGGATGGAGCAGCACTGGGGCTTTGGCCTGGAGGAGCTATACGGGCTGGCGC
TGCGCTTCTACAAAATAAAAGATGGCAAAGCCTTCCATCCAACTTACGAAGAAAAACTGAAGTT
TGTGGCACTGCATAAGCAAGTTCTTTTGGGCCCATATAACCCAGACACTTCCCCTGAGGTTGGA
TTCTTTGATGTGTTGGGGAATGATAGGAGGAGAGAATGGGCAGCTCTGGGAAACATGTCCAAAG
AGGACGCCATGGTAGAGTTTGTGAAGCTTCTGAATAAGTGCTGTCCTCTCCTCTCAGCATATGT
TGCGTCCCACAGAATAGAGAAGGAAGAAGAAGAAAAAAGAAGAAAGGCGGAGGAGGAGCGAAGG
CAGCGTGAAGAAGAAGAACGAGAGCGGCTGCAAAAGGAAGAAGAGAAACGGAAGCGAGAGGAGG
AGGACCGACTCAGACGGGAGGAAGAAGAGAGGCGGCGGATAGAAGAAGAGAGGCTTCGGCTGGA
ACAGCAAAAGCAGCAGATAATGGCAGCTTTAAACTCGCAGACTGCCGTGCAATTCCAGCAGTAT
GCGGCCCAGCAGTATCCAGGGAACTACGAGCAGCAGCAGATTCTCATCCGCCAGCTGCAGGAGC
AGCACTATCAGCAGTACATGCAACAGTTATACCAAGTCCAGCTTGCACAGCAACAGGCAGCATT
GCAGAAGCAGCAAGAAGTAGTGGTGGCTGGGGCTTCATTGCCTGCGTCAACAAAGGTGAACACA
GCTGGAGCAAGTGATCCCCTGCCAGTGAACGGACAGGCCAAGACCCACACTGAGAATCCCGAAA
AAGTCCTTGAGCCAGAAGCTGCGGAAGAGGCCTTGGAAAATGGACCCAAAGACTCTCTTCCAGT
GATTGCAGCTCCTTCCATGTGGACAAGACCACAGATCAAAGACTTTAAAGAGAAGATTCGGCAG
GATGCAGATTCTGTGATTACAGTCCGGCGAGGAGAAGTAGTCACCGTTCGAGTCCCCACTCATG
AGGAAGGATCATACCTCTTTTGGGAATTTGCCACAGACAGTTATGACATTGGGTTTGGGGTTTA
TTTTGAATGGACAGACTCTCCAAACGCTGCTGTCAGTGTGCATGTCAGTGAGTCCAGTGACGAC
GAAGAGGAGGAGGAAGAAGAAAATGTCACTTGTGAAGAGAAAGCCAAAAAGAATGTCAACAAGC
CTCTGCTGGATGAGATTGTACCTGTGTACCGGCGGGACTGTCATGAGGAAGTGTATGCAGGCAG
CCACCAGTACCCAGGGAGGGGGGTCTATCTCCTCAAGTTTGATAACTCCTACTCTCTGTGGAGG
TCCAAGTCAGTCTACTACAGAGTCTATTATACTAGATAAAGCTGGTGTCCAGAGTCGGAGTCTG
GGGTTGAGCAGAAGATGACATTTAATTTCCTTTGACTTTTGTGGCGCATAGGAGTCAGTGTTTA
CCTTCTCGATTGTGTTCTGATGGTTTATGAACTCTTACTGAGAACCAGGATTCCTTGAGACTCG
TTAGCGTTAATGCTCTGATGTTAAAAGCAGTTCTGAAGACTCATCTAGCCCTTGGGTGCTGACC
AGCAGAGCCGCTCGTGGATATTGGAGTTACAAGAGCTACGTGTTAATATTCAGTCTCCAAAATA
AACATCCCGGCGTTGCCCTGACCTGGCTGGTGGGTGCACTGCTGTCTGTTCCGTGCGTTGTACA
GAGCCACGGTTAGAGCCGTAACTGGGAATGCTTCTGAACTAGTCTCCTCCTGTGCAGCTGGCTT
TGACTGGAGTGCAACAGTTTGAGACTTAAAAGCTCAAGACTTCACAGGTTATAGTAGAAAAAGA
AATGGCCTCAACTTGATCTCACCTGAGTGACCAAGGCTGTTTTTGCTTTTGGGTACAACTGTTT
AGTTAGTTATGTTACAGAGAATTATTTTCTGAGAGAATGACCAACTTAGAATATTCAAGCCCNG
TAGGTGATTGATGTGTAGAGATTCATAAGGGGNCCNTCGGAACCTTCCCAAGGGGCCTTCCCAA
CCCGCCCTCCCATTTTCAGGCCTTTTCTTCCACCTGCCATTCATACTACTGCTAACAAAAAACT
ATTGATTTTGTTTTCATAGAGTTTTGTGGAACATCTCAAATTGANACTATTTTCTGTAAAAAAT
AACATGGCCAGGAGTTTTATAAACTCCACTGGCACCTACTGAATTAAAATATGCAAAATCACTT
TAGTGTAATTCAGCATTTGAAGAGTGCTGCTGCACTAATAGGAAGTCACTGCCAGAGACAGTCT
GAATTTCTTTCTGTTCCTTATGAGGGCACAAACCACCCCACAGTCCTGGTGGAGCTGCAATCTA
GAGAAAATTGGAAACTCACATGCTTAAATGTTACAGCTTAATCTGTCTTATGTCTTACTGGTGG
AAAAAGGAACATCTTCAGTTTTCTCATGGAAACAAGTCCACGTTCACTGCTTCCCATCTGTGTG
AGAGGTTAAGTATGTAAAGGGAGGGTAGTATAGACAGAAAACGACACGTGTACGCCCACTGCTG
TATTGCCTCTGAAGTCTAAGGTTTAGTTTTGACATCACAGGTCCCTTCCAGGGGCCCCACTGGC
CAGCTGCAGTGTGCACAGGCTACTACGTCAGGCTGTGTGAGGTTTTCATTTGCTGCCTTTCCTT
CTGTTTATAANACCTGGTTTATAGGTTCTCTTTTGTTTGTTAAGAAACTGGATTATTTTCTTCT
AACCAATGCTTAATTTGTGTTATTGAATTTTCACTCGGAAGTAGTCAAATGTCTATGCTGTTAC
NCCCAGAATATTCATTAGGCCCCACAGCTCTTCTGTATATATAGAAACCACAGAGTTAGGATTT
TTTTTTTTAATGAGAAAAATACTGTATTTAAAATGTAAAATAAACTTTTAAAAAGCAAGCACTA
ATATATATTTCTTTCAGCCTTTGATTACAATTTTGTCCTTGCACATGTTAAGATAAATTATCTT
CTAAAAATCTTGTTCTTGGGAGCAGTGTATGTCACTTTACATAGCAGTTTCTGTCACATGTTCA
TATCTGAACATTTTTGGTTCTAGACTTTTTTATTGCTTTGGCTGTCGATTAGTACCATACAAGT
GCAATTTCAAAAAGATCTTCAAAGTAATATATTTAATCAATTAAAATGTTTGTCGGCAAAAAAA
AAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_878263	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83877	(Get FASTA)	NCBI Sequence Viewer
	AAP94639	(Get FASTA)	NCBI Sequence Viewer
	EDL94830	(Get FASTA)	NCBI Sequence Viewer
	Q7TNY6	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_878263 ⟸ NM_182843

- UniProtKB:

Q7TNY6 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAAQLNVEQLEVSLDGLTLSPDSEERPGAEGAPLQTPPSSPPRDGLGSGTAGQQREPGEAAAEG
AAEEARRMEQHWGFGLEELYGLALRFYKIKDGKAFHPTYEEKLKFVALHKQVLLGPYNPDTSPE
VGFFDVLGNDRRREWAALGNMSKEDAMVEFVKLLNKCCPLLSAYVASHRIEKEEEEKRRKAEEE
RRQREEEERERLQKEEEKRKREEEDRLRREEEERRRIEEERLRLEQQKQQIMAALNSQTAVQFQ
QYAAQQYPGNYEQQQILIRQLQEQHYQQYMQQLYQVQLAQQQAALQKQQEVVVAGASLPASTKV
NTAGASDPLPVNGQAKTHTENPEKVLEPEAAEEALENGPKDSLPVIAAPSMWTRPQIKDFKEKI
RQDADSVITVRRGEVVTVRVPTHEEGSYLFWEFATDSYDIGFGVYFEWTDSPNAAVSVHVSESS
DDEEEEEEENVTCEEKAKKNVNKPLLDEIVPVYRRDCHEEVYAGSHQYPGRGVYLLKFDNSYSL
WRSKSVYYRVYYTR

hide sequence

RefSeq Acc Id:

ENSRNOP00000004293 ⟸ ENSRNOT00000004293

RefSeq Acc Id:

ENSRNOP00000074070 ⟸ ENSRNOT00000085390

Protein Domains

ACB GOLD

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699061

Promoter ID:

EPDNEW_R9586

Type:

initiation region

Name:

Acbd3_1

Description:

acyl-CoA binding domain containing 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	99,004,957 - 99,005,017	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:727851	AgrOrtholog
Ensembl Genes	ENSRNOG00000003185	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000004293	UniProtKB/TrEMBL
	ENSRNOP00000074070	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000004293	UniProtKB/TrEMBL
	ENSRNOT00000085390	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	1.20.80.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7130229	IMAGE-MGC_LOAD
InterPro	Acyl-CoA-binding_prot_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Acyl-CoA-binding_protein	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Acyl-CoA-binding_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FERM/acyl-CoA-bd_prot_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GOLD_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GOLD_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:289312	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:95164	IMAGE-MGC_LOAD
NCBI Gene	289312	ENTREZGENE
Pfam	ACBP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GOLD_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Acbd3	PhenoGen
PROSITE	ACB_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ACB_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GOLD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF101576	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF47027	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K756_RAT	UniProtKB/TrEMBL
	G3V6E4_RAT	UniProtKB/TrEMBL
	GCP60_RAT	UniProtKB/Swiss-Prot
	Q5XI18_RAT	UniProtKB/TrEMBL
	Q7TNY6	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-28	Acbd3	acyl-CoA binding domain containing 3	Acbd3	acyl-Coenzyme A binding domain containing 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Acbd3	acyl-Coenzyme A binding domain containing 3		DMT1-associated protein	Name updated	1299863	APPROVED
2004-09-10	Acbd3	DMT1-associated protein	LOC289312		Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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Imported Disease Annotations - ClinVar