Acbd3 (acyl-CoA binding domain containing 3) - Rat Genome Database

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Gene: Acbd3 (acyl-CoA binding domain containing 3) Rattus norvegicus
Analyze
Symbol: Acbd3
Name: acyl-CoA binding domain containing 3
RGD ID: 727851
Description: Predicted to enable protein kinase A regulatory subunit binding activity. Predicted to be involved in steroid biosynthetic process. Located in Golgi membrane. Orthologous to human ACBD3 (acyl-CoA binding domain containing 3); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: acyl-CoA-binding domain-containing protein 3; acyl-Coenzyme A binding domain containing 3; DAP; DMT1-associated protein; GOCAP1; golgi complex-associated protein 1; golgi phosphoprotein 1; golgi resident protein GCP60; GOLPH1; LOC289312; neurotrophin receptor alike death domain protein; p75-like apoptosis-inducing death domain protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Annotation category: suggests misassembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21392,455,813 - 92,484,556 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1392,455,655 - 92,483,380 (+)Ensembl
Rnor_6.01399,004,942 - 99,035,520 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,004,942 - 99,035,519 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013104,006,998 - 104,036,981 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,461,327 - 96,490,328 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11396,650,262 - 96,679,260 (+)NCBI
Celera1392,001,461 - 92,029,998 (+)NCBICelera
Cytogenetic Map13q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (ISO)
Golgi membrane  (IBA,IDA,IEA,ISO)
mitochondrion  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Corticotropin-releasing factor binding protein enters the regulated secretory pathway in neuroendocrine cells and cortical neurons. Blanco EH, etal., Neuropeptides. 2011 Aug;45(4):273-9. doi: 10.1016/j.npep.2011.05.002. Epub 2011 May 31.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17911601   PMID:19946888   PMID:27009356   PMID:30361391  


Genomics

Comparative Map Data
Acbd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21392,455,813 - 92,484,556 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1392,455,655 - 92,483,380 (+)Ensembl
Rnor_6.01399,004,942 - 99,035,520 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,004,942 - 99,035,519 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013104,006,998 - 104,036,981 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,461,327 - 96,490,328 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11396,650,262 - 96,679,260 (+)NCBI
Celera1392,001,461 - 92,029,998 (+)NCBICelera
Cytogenetic Map13q26NCBI
ACBD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381226,144,679 - 226,186,741 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1226,144,679 - 226,186,741 (-)EnsemblGRCh38hg38GRCh38
GRCh371226,332,380 - 226,374,442 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,399,003 - 224,441,046 (-)NCBINCBI36hg18NCBI36
Build 341222,639,116 - 222,681,158NCBI
Celera1199,523,027 - 199,565,088 (-)NCBI
Cytogenetic Map1q42.12NCBI
HuRef1196,849,546 - 196,891,524 (-)NCBIHuRef
CHM1_11227,605,141 - 227,647,173 (-)NCBICHM1_1
T2T-CHM13v2.01225,332,550 - 225,374,626 (-)NCBI
Acbd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,553,608 - 180,581,769 (+)NCBIGRCm39mm39
GRCm39 Ensembl1180,553,608 - 180,581,769 (+)Ensembl
GRCm381180,726,043 - 180,754,204 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,726,043 - 180,754,204 (+)EnsemblGRCm38mm10GRCm38
MGSCv371182,656,174 - 182,684,335 (+)NCBIGRCm37mm9NCBIm37
MGSCv361182,562,718 - 182,590,840 (+)NCBImm8
Celera1187,789,212 - 187,816,898 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.46NCBI
Acbd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955489339,561 - 381,496 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955489337,578 - 381,557 (-)NCBIChiLan1.0ChiLan1.0
ACBD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11206,601,100 - 206,641,355 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1206,603,023 - 206,641,311 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01201,606,028 - 201,646,107 (-)NCBIMhudiblu_PPA_v0panPan3
ACBD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1738,713,729 - 38,733,138 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl738,714,592 - 38,731,558 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,171,477 - 38,213,155 (+)NCBI
ROS_Cfam_1.0738,523,648 - 38,566,134 (+)NCBI
ROS_Cfam_1.0 Ensembl738,523,655 - 38,566,210 (+)Ensembl
UMICH_Zoey_3.1738,362,436 - 38,404,682 (+)NCBI
UNSW_CanFamBas_1.0738,369,163 - 38,411,384 (+)NCBI
UU_Cfam_GSD_1.0738,640,120 - 38,682,380 (+)NCBI
Acbd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934451,792,205 - 51,829,544 (+)NCBI
SpeTri2.0NW_0049365262,917,792 - 2,955,072 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACBD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1014,031,021 - 14,069,517 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11014,032,370 - 14,049,598 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ACBD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,585,619 - 3,630,711 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl253,585,625 - 3,628,789 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660553,587,013 - 3,631,969 (+)NCBIVero_WHO_p1.0
Acbd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624807265,275 - 301,326 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_004624807265,519 - 301,383 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH125959  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,484,302 - 92,484,525 (+)MAPPERmRatBN7.2
Rnor_6.01399,035,267 - 99,035,489NCBIRnor6.0
Rnor_5.013104,036,728 - 104,036,950UniSTSRnor5.0
RGSC_v3.41396,490,075 - 96,490,297UniSTSRGSC3.4
Celera1392,029,745 - 92,029,967UniSTS
Cytogenetic Map13q26UniSTS
BE120590  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,475,485 - 92,475,654 (+)MAPPERmRatBN7.2
Rnor_6.01399,026,453 - 99,026,621NCBIRnor6.0
Rnor_5.013104,027,914 - 104,028,082UniSTSRnor5.0
RGSC_v3.41396,481,261 - 96,481,429UniSTSRGSC3.4
Celera1392,020,931 - 92,021,099UniSTS
RH 3.4 Map13625.8UniSTS
Cytogenetic Map13q26UniSTS
AI234525  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,484,373 - 92,484,488 (+)MAPPERmRatBN7.2
Rnor_6.01399,035,338 - 99,035,452NCBIRnor6.0
Rnor_5.013104,036,799 - 104,036,913UniSTSRnor5.0
RGSC_v3.41396,490,146 - 96,490,260UniSTSRGSC3.4
Celera1392,029,816 - 92,029,930UniSTS
RH 3.4 Map13627.7UniSTS
Cytogenetic Map13q26UniSTS
C76375  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,484,377 - 92,484,486 (+)MAPPERmRatBN7.2
Rnor_6.01399,035,342 - 99,035,450NCBIRnor6.0
Rnor_5.013104,036,803 - 104,036,911UniSTSRnor5.0
RGSC_v3.41396,490,150 - 96,490,258UniSTSRGSC3.4
Celera1392,029,820 - 92,029,928UniSTS
Cytogenetic Map13q26UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655959Pur32Proteinuria QTL 328.4total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:69
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000004293
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 47 32 19 32 1 3 66 30 36 11 1
Low 8 10 9 9 7 8 8 5 5 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000004293   ⟹   ENSRNOP00000004293
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1392,455,655 - 92,483,380 (+)Ensembl
Rnor_6.0 Ensembl1399,005,142 - 99,034,361 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000085390   ⟹   ENSRNOP00000074070
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1399,004,942 - 99,035,519 (+)Ensembl
RefSeq Acc Id: NM_182843   ⟹   NP_878263
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21392,455,813 - 92,484,556 (+)NCBI
Rnor_6.01399,004,942 - 99,035,520 (+)NCBI
Rnor_5.013104,006,998 - 104,036,981 (+)NCBI
RGSC_v3.41396,461,327 - 96,490,328 (+)RGD
Celera1392,001,461 - 92,029,998 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_878263 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83877 (Get FASTA)   NCBI Sequence Viewer  
  AAP94639 (Get FASTA)   NCBI Sequence Viewer  
  EDL94830 (Get FASTA)   NCBI Sequence Viewer  
  Q7TNY6 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_878263   ⟸   NM_182843
- UniProtKB: Q7TNY6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000004293   ⟸   ENSRNOT00000004293
RefSeq Acc Id: ENSRNOP00000074070   ⟸   ENSRNOT00000085390
Protein Domains
ACB   GOLD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TNY6-F1-model_v2 AlphaFold Q7TNY6 1-526 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699061
Promoter ID:EPDNEW_R9586
Type:initiation region
Name:Acbd3_1
Description:acyl-CoA binding domain containing 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01399,004,957 - 99,005,017EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727851 AgrOrtholog
BioCyc Gene G2FUF-17115 BioCyc
Ensembl Genes ENSRNOG00000003185 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000004293 ENTREZGENE
  ENSRNOP00000004293.5 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004293 ENTREZGENE
  ENSRNOT00000004293.6 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7130229 IMAGE-MGC_LOAD
InterPro Acyl-CoA-binding_prot_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA-binding_protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA-binding_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GOLD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GOLD_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:289312 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95164 IMAGE-MGC_LOAD
NCBI Gene 289312 ENTREZGENE
Pfam ACBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GOLD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Acbd3 PhenoGen
PROSITE ACB_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACB_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GOLD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF101576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47027 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G3V6E4_RAT UniProtKB/TrEMBL
  GCP60_RAT UniProtKB/Swiss-Prot
  Q5XI18_RAT UniProtKB/TrEMBL
  Q7TNY6 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-28 Acbd3  acyl-CoA binding domain containing 3  Acbd3  acyl-Coenzyme A binding domain containing 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Acbd3  acyl-Coenzyme A binding domain containing 3    DMT1-associated protein  Name updated 1299863 APPROVED
2004-09-10 Acbd3  DMT1-associated protein  LOC289312    Symbol and Name updated 1299863 APPROVED