Cxcl11 (C-X-C motif chemokine ligand 11) - Rat Genome Database

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Gene: Cxcl11 (C-X-C motif chemokine ligand 11) Rattus norvegicus
Analyze
Symbol: Cxcl11
Name: C-X-C motif chemokine ligand 11
RGD ID: 727827
Description: Enables chemokine activity. Involved in immune response. Predicted to be located in membrane. Predicted to be active in extracellular space. Orthologous to human CXCL11 (C-X-C motif chemokine ligand 11); PARTICIPATES IN chemokine mediated signaling pathway; cytokine mediated signaling pathway; Toll-like receptor signaling pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C-X-C motif chemokine 11; chemokine (C-X-C motif) ligand 11; SCYB11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81415,973,728 - 15,976,503 (+)NCBIGRCr8
mRatBN7.21415,689,432 - 15,692,207 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1415,689,424 - 15,692,271 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1415,697,639 - 15,700,419 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01417,016,484 - 17,019,264 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01415,711,911 - 15,714,691 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01417,195,395 - 17,198,170 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1417,195,014 - 17,198,291 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01417,111,527 - 17,114,302 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41417,250,648 - 17,253,423 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11417,250,647 - 17,253,423 (+)NCBI
Celera1415,083,879 - 15,086,654 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-nitropyrene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-amino-2-deoxy-D-glucopyranose  (EXP)
22-Hydroxycholesterol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
4-nitroquinoline N-oxide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (EXP)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
asperentin  (ISO)
benzo[a]pyrene  (ISO)
beta-D-glucosamine  (EXP)
beta-naphthoflavone  (EXP,ISO)
bilirubin IXalpha  (ISO)
biotin  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP)
buspirone  (EXP)
cadmium dichloride  (EXP)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon monoxide  (ISO)
carbon nanotube  (ISO)
chenodeoxycholic acid  (ISO)
chondroitin sulfate  (ISO)
cisplatin  (EXP,ISO)
cobalt atom  (ISO)
cobalt dichloride  (EXP)
cyclophosphamide  (ISO)
deoxycholic acid  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
endosulfan  (EXP)
erlotinib hydrochloride  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fragrance  (ISO)
fulvestrant  (ISO)
fumonisin B1  (ISO)
furan  (EXP)
gadodiamide hydrate  (ISO)
gemcitabine  (ISO)
gentamycin  (EXP)
graphene oxide  (ISO)
irinotecan  (EXP)
iron(2+) sulfate (anhydrous)  (ISO)
lipopolysaccharide  (ISO)
malathion  (ISO)
methotrexate  (ISO)
Muraglitazar  (EXP)
mycotoxin  (ISO)
N-nitrosodiethylamine  (EXP)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
nickel dichloride  (EXP,ISO)
nimesulide  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paraquat  (ISO)
perfluorooctanoic acid  (EXP)
phenylephrine  (EXP)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
rotenone  (EXP)
ruxolitinib  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
sotorasib  (ISO)
sterigmatocystin  (ISO)
succimer  (ISO)
sulfur dioxide  (ISO)
tacrolimus hydrate  (ISO)
taurocholic acid  (ISO)
Tesaglitazar  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (EXP,ISO)
TMC-120A  (ISO)
tofacitinib  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (EXP)
triphenyl phosphate  (EXP)
Triptolide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zinc atom  (ISO)
zinc dichloride  (ISO)
zinc(0)  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Critical role for CXCR3 chemokine biology in the pathogenesis of bronchiolitis obliterans syndrome. Belperio JA, etal., J Immunol. 2002 Jul 15;169(2):1037-49.
2. CXCR3 and CCR5 chemokines in induced sputum from patients with COPD. Costa C, etal., Chest. 2008 Jan;133(1):26-33. Epub 2007 Oct 9.
3. Interferon-inducible CXC chemokines directly contribute to host defense against inhalational anthrax in a murine model of infection. Crawford MA, etal., PLoS Pathog. 2010 Nov 18;6(11):e1001199.
4. Hepatocyte-Specific Arid1a Deficiency Initiates Mouse Steatohepatitis and Hepatocellular Carcinoma. Fang JZ, etal., PLoS One. 2015 Nov 16;10(11):e0143042. doi: 10.1371/journal.pone.0143042. eCollection 2015.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. A SARS-CoV-2 Infection Model in Mice Demonstrates Protection by Neutralizing Antibodies. Hassan AO, etal., Cell. 2020 Jun 10. pii: S0092-8674(20)30742-X. doi: 10.1016/j.cell.2020.06.011.
7. Lymphoid follicle cells in chronic obstructive pulmonary disease overexpress the chemokine receptor CXCR3. Kelsen SG, etal., Am J Respir Crit Care Med. 2009 May 1;179(9):799-805. Epub 2009 Feb 12.
8. Expression of rat I-TAC/CXCL11/SCYA11 during central nervous system inflammation: comparison with other CXCR3 ligands. McColl SR, etal., Lab Invest 2004 Nov;84(11):1418-29.
9. Chemokine production during hypersensitivity pneumonitis. Nance S, etal., Eur J Immunol. 2004 Mar;34(3):677-85.
10. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
11. CXCL9 and 11 in patients with pulmonary sarcoidosis: a role of alveolar macrophages. Nishioka Y, etal., Clin Exp Immunol. 2007 Aug;149(2):317-26. Epub 2007 Jun 5.
12. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
13. GOA pipeline RGD automated data pipeline
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. CXCR3 and its ligands participate in the host response to Bordetella bronchiseptica infection of the mouse respiratory tract but are not required for clearance of bacteria from the lung. Widney DP, etal., Infect Immun. 2005 Jan;73(1):485-93.
Additional References at PubMed
PMID:12477932   PMID:12782716   PMID:12949249   PMID:17264982   PMID:18645041  


Genomics

Comparative Map Data
Cxcl11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81415,973,728 - 15,976,503 (+)NCBIGRCr8
mRatBN7.21415,689,432 - 15,692,207 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1415,689,424 - 15,692,271 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1415,697,639 - 15,700,419 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01417,016,484 - 17,019,264 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01415,711,911 - 15,714,691 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01417,195,395 - 17,198,170 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1417,195,014 - 17,198,291 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01417,111,527 - 17,114,302 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41417,250,648 - 17,253,423 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11417,250,647 - 17,253,423 (+)NCBI
Celera1415,083,879 - 15,086,654 (+)NCBICelera
Cytogenetic Map14p22NCBI
CXCL11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38476,033,682 - 76,036,070 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl476,033,682 - 76,041,415 (-)EnsemblGRCh38hg38GRCh38
GRCh37476,954,835 - 76,957,223 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36477,173,859 - 77,176,257 (-)NCBINCBI36Build 36hg18NCBI36
Build 34477,312,020 - 77,314,412NCBI
Celera474,255,322 - 74,257,722 (-)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef472,707,280 - 72,709,795 (-)NCBIHuRef
CHM1_1476,931,383 - 76,933,900 (-)NCBICHM1_1
T2T-CHM13v2.0479,374,343 - 79,376,731 (-)NCBIT2T-CHM13v2.0
Cxcl11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,507,403 - 92,511,155 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl592,507,403 - 92,513,344 (-)EnsemblGRCm39 Ensembl
GRCm38592,359,544 - 92,363,296 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl592,359,544 - 92,365,485 (-)EnsemblGRCm38mm10GRCm38
MGSCv37592,788,570 - 92,792,303 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36593,434,744 - 93,438,477 (-)NCBIMGSCv36mm8
Celera590,503,193 - 90,506,930 (-)NCBICelera
Cytogenetic Map5E2NCBI
cM Map546.61NCBI
Cxcl11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955433766,272 - 771,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955433769,449 - 771,137 (-)NCBIChiLan1.0ChiLan1.0
CXCL11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2354,037,310 - 54,039,639 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1454,227,065 - 54,229,394 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0448,169,954 - 48,172,455 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1454,007,818 - 54,010,343 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl454,007,818 - 54,010,336 (+)Ensemblpanpan1.1panPan2
CXCL11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.132631,084 - 636,997 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl32631,478 - 632,868 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl32631,478 - 632,868 (-)NCBICanFam3.1canFam3CanFam3.1
ROS_Cfam_1.032655,797 - 662,280 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.132655,531 - 661,573 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.032609,837 - 615,880 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03239,553,718 - 39,589,852 (+)NCBIUU_Cfam_GSD_1.0
Cxcl11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528511,433,511 - 11,435,471 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493667671,667 - 73,738 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493667672,383 - 73,697 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXCL11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl871,713,803 - 71,725,674 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1871,713,790 - 71,725,669 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2875,909,581 - 75,921,427 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CXCL11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1724,540,401 - 24,543,456 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl724,541,767 - 24,542,832 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660372,882,698 - 2,885,219 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cxcl11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475714,952,851 - 14,954,905 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475714,952,966 - 14,954,343 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cxcl11
15 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:72
Interacting mature miRNAs:77
Transcripts:ENSRNOT00000031667
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14381307418274691Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat

Markers in Region
RH128858  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21415,691,988 - 15,692,208 (+)MAPPERmRatBN7.2
Rnor_6.01417,197,952 - 17,198,171NCBIRnor6.0
Rnor_5.01417,114,084 - 17,114,303UniSTSRnor5.0
RGSC_v3.41417,253,205 - 17,253,424UniSTSRGSC3.4
Celera1415,086,436 - 15,086,655UniSTS
RH 3.4 Map14164.4UniSTS
Cytogenetic Map14p22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 4 16 16 10 16 1
Low 1 25 39 25 9 25 5 5 22 12 9 5
Below cutoff 12 2 3 5 42 8 18 2 3

Sequence


RefSeq Acc Id: ENSRNOT00000031667   ⟹   ENSRNOP00000035380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1415,689,424 - 15,692,271 (+)Ensembl
Rnor_6.0 Ensembl1417,195,014 - 17,198,291 (+)Ensembl
RefSeq Acc Id: NM_182952   ⟹   NP_891997
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,973,728 - 15,976,503 (+)NCBI
mRatBN7.21415,689,432 - 15,692,207 (+)NCBI
Rnor_6.01417,195,395 - 17,198,170 (+)NCBI
Rnor_5.01417,111,527 - 17,114,302 (+)NCBI
RGSC_v3.41417,250,648 - 17,253,423 (+)RGD
Celera1415,083,879 - 15,086,654 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_891997 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI68725 (Get FASTA)   NCBI Sequence Viewer  
  AAQ02665 (Get FASTA)   NCBI Sequence Viewer  
  AAQ10776 (Get FASTA)   NCBI Sequence Viewer  
  EDL88638 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000035380
  ENSRNOP00000035380.3
RefSeq Acc Id: NP_891997   ⟸   NM_182952
- Peptide Label: precursor
- UniProtKB: Q7TNL0 (UniProtKB/TrEMBL),   B5DEM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000035380   ⟸   ENSRNOT00000031667
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TNL0-F1-model_v2 AlphaFold Q7TNL0 1-100 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699210
Promoter ID:EPDNEW_R9735
Type:single initiation site
Name:Cxcl11_1
Description:C-X-C motif chemokine ligand 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01417,195,387 - 17,195,447EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727827 AgrOrtholog
BioCyc Gene G2FUF-16261 BioCyc
Ensembl Genes ENSRNOG00000022298 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031667 ENTREZGENE
  ENSRNOT00000031667.5 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chemokine_IL8 UniProtKB/TrEMBL
  CXC_Chemokine_domain UniProtKB/TrEMBL
  CXC_chmkine_smll UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
  Small_chemokine_CXC_CS UniProtKB/TrEMBL
KEGG Report rno:305236 UniProtKB/TrEMBL
NCBI Gene 305236 ENTREZGENE
Pfam IL8 UniProtKB/TrEMBL
PhenoGen Cxcl11 PhenoGen
PRINTS INTERLEUKIN8 UniProtKB/TrEMBL
  SMALLCYTKCXC UniProtKB/TrEMBL
PROSITE SMALL_CYTOKINES_CXC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022298 RatGTEx
SMART SCY UniProtKB/TrEMBL
Superfamily-SCOP Chemokine_IL8 UniProtKB/TrEMBL
UniProt B5DEM2 ENTREZGENE, UniProtKB/TrEMBL
  Q7TNL0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-08 Cxcl11  C-X-C motif chemokine ligand 11  Cxcl11  chemokine (C-X-C motif) ligand 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Cxcl11  chemokine (C-X-C motif) ligand 11      Symbol and Name status set to approved 1299863 APPROVED