KNOP1P1 (lysine rich nucleolar protein 1 pseudogene 1) - Rat Genome Database

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Gene: KNOP1P1 (lysine rich nucleolar protein 1 pseudogene 1) Homo sapiens
Analyze
Symbol: KNOP1P1
Name: lysine rich nucleolar protein 1 pseudogene 1
RGD ID: 7251370
HGNC Page HGNC:48919
Description: INTERACTS WITH lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: lysine-rich nucleolar protein 1 pseudogene 1
Related Functional Gene: KNOP1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381224,583,121 - 24,585,100 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1224,583,561 - 24,584,549 (+)EnsemblGRCh38hg38GRCh38
GRCh371224,736,055 - 24,738,034 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,606,870 - 24,628,753 (+)NCBINCBI36Build 36hg18NCBI36
Celera1229,874,122 - 29,884,384 (+)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1224,505,187 - 24,507,114 (+)NCBIHuRef
CHM1_11224,701,344 - 24,703,291 (+)NCBICHM1_1
T2T-CHM13v2.01224,453,929 - 24,455,908 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Variants

.
Variants in KNOP1P1
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:127
Interacting mature miRNAs:129
Transcripts:ENST00000542108
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 6 1 103 2
Below cutoff 29 26 14 7 48 5 38 23 31 1 254 25 2 10 23

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000542108
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1224,583,561 - 24,584,549 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC KNOP1P1 COSMIC
Ensembl Genes ENSG00000256852 Ensembl
GTEx ENSG00000256852 GTEx
HGNC ID HGNC:48919 ENTREZGENE
Human Proteome Map KNOP1P1 Human Proteome Map
NCBI Gene KNOP1P1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-14 KNOP1P1  lysine rich nucleolar protein 1 pseudogene 1    lysine-rich nucleolar protein 1 pseudogene 1  Symbol and/or name change 5135510 APPROVED