PDLIM1P4 (PDZ and LIM domain 1 pseudogene 4) - Rat Genome Database

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Gene: PDLIM1P4 (PDZ and LIM domain 1 pseudogene 4) Homo sapiens
Analyze
Symbol: PDLIM1P4
Name: PDZ and LIM domain 1 pseudogene 4
RGD ID: 7247933
HGNC Page HGNC:48947
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: PDLIM1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38398,782,213 - 98,783,390 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl398,782,188 - 98,783,193 (+)EnsemblGRCh38hg38GRCh38
GRCh37398,501,057 - 98,502,234 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q12.1NCBI
HuRef395,873,227 - 95,874,203 (+)NCBIHuRef
CHM1_1398,464,181 - 98,465,159 (+)NCBICHM1_1
T2T-CHM13v2.03101,490,486 - 101,491,657 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:242
Count of miRNA genes:238
Interacting mature miRNAs:242
Transcripts:ENST00000504327
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 2 18 25 1 2 2 3 1 1
Low 1315 1967 1344 514 911 364 3062 789 1900 231 616 1195 151 867 1726 4
Below cutoff 957 934 346 95 720 86 1024 1153 1663 147 709 337 17 320 839

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000504327
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl398,782,188 - 98,783,193 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PDLIM1P4 COSMIC
Ensembl Genes ENSG00000249274 Ensembl, ENTREZGENE
GTEx ENSG00000249274 GTEx
HGNC ID HGNC:48947 ENTREZGENE
Human Proteome Map PDLIM1P4 Human Proteome Map
NCBI Gene PDLIM1P4 ENTREZGENE