Gene: LINC01012 (long intergenic non-protein coding RNA 1012) Homo sapiens
Analyze
Symbol:
LINC01012
Name:
long intergenic non-protein coding RNA 1012
RGD ID:
7247871
HGNC Page
HGNC:48986
Description:
INTERACTS WITH aflatoxin B1
Type:
ncrna (Ensembl: lncRNA)
RefSeq Status:
VALIDATED
Allele / Splice:
See ClinVar data
Latest Assembly:
GRCh38 - Human Genome Assembly GRCh38
Position:
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 6 27,694,035 - 27,710,222 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 6 27,694,026 - 27,713,706 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 6 27,661,814 - 27,678,001 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Celera 6 29,267,870 - 29,282,949 (+) NCBI Celera Cytogenetic Map 6 p22.1 NCBI HuRef 6 27,469,928 - 27,485,557 (+) NCBI HuRef CHM1_1 6 27,664,096 - 27,680,283 (+) NCBI CHM1_1 T2T-CHM13v2.0 6 27,563,696 - 27,579,886 (+) NCBI T2T-CHM13v2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Additional References at PubMed
Genomics
Expression
RNA-SEQ Expression
High: > 1000 TPM valueMedium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPMBelow Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system
circulatory system
endocrine system
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
adipose tissue
appendage
entire extraembryonic component
High
Medium
Low
309
31
468
19
690
23
487
34
577
53
422
578
8
3
106
4
Below cutoff
1671
2045
748
293
982
136
2501
960
2794
108
816
869
157
887
1601
Sequence
RefSeq Acc Id:
ENST00000625477
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,073 - 27,702,713 (+) Ensembl
RefSeq Acc Id:
ENST00000628328
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,035 - 27,711,354 (+) Ensembl
RefSeq Acc Id:
ENST00000628762
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,045 - 27,710,222 (+) Ensembl
RefSeq Acc Id:
ENST00000629732
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,079 - 27,709,157 (+) Ensembl
RefSeq Acc Id:
ENST00000662411
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,027 - 27,713,706 (+) Ensembl
RefSeq Acc Id:
ENST00000685096
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,026 - 27,713,286 (+) Ensembl
RefSeq Acc Id:
ENST00000686567
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,027 - 27,713,286 (+) Ensembl
RefSeq Acc Id:
ENST00000687474
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,068 - 27,695,137 (+) Ensembl
RefSeq Acc Id:
ENST00000687535
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,043 - 27,713,289 (+) Ensembl
RefSeq Acc Id:
ENST00000687781
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,053 - 27,713,706 (+) Ensembl
RefSeq Acc Id:
ENST00000687799
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,046 - 27,713,277 (+) Ensembl
RefSeq Acc Id:
ENST00000688605
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,027 - 27,713,706 (+) Ensembl
RefSeq Acc Id:
ENST00000689802
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,043 - 27,713,706 (+) Ensembl
RefSeq Acc Id:
ENST00000692784
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,060 - 27,713,284 (+) Ensembl
RefSeq Acc Id:
ENST00000692987
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,058 - 27,713,284 (+) Ensembl
RefSeq Acc Id:
ENST00000693575
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,039 - 27,713,706 (+) Ensembl
RefSeq Acc Id:
ENST00000693645
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,027 - 27,713,706 (+) Ensembl
RefSeq Acc Id:
ENST00000702246
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 27,694,113 - 27,707,055 (+) Ensembl
RefSeq Acc Id:
NR_038292
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38 6 27,694,079 - 27,709,157 (+) NCBI GRCh37 6 27,661,814 - 27,678,001 (+) NCBI HuRef 6 27,469,928 - 27,485,557 (+) NCBI CHM1_1 6 27,664,140 - 27,679,218 (+) NCBI T2T-CHM13v2.0 6 27,563,740 - 27,578,821 (+) NCBI
Sequence:
AGCTTACTGTTAGTGGTCGAGTTTTTCTGGAAGTGGGCTTCCGCGATCGCGGGGACCAACGCCC
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RefSeq Acc Id:
NR_038293
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38 6 27,694,035 - 27,710,222 (+) NCBI GRCh37 6 27,661,814 - 27,678,001 (+) NCBI HuRef 6 27,469,928 - 27,485,557 (+) NCBI CHM1_1 6 27,664,096 - 27,680,283 (+) NCBI T2T-CHM13v2.0 6 27,563,696 - 27,579,886 (+) NCBI
Sequence:
CGCCAGGGGATGCAAACCCTTCTGCCCCTTTTTGCTACCCCTGAAGCTTACTGTTAGTGGTCGA
hide sequence
RefSeq Acc Id:
NR_038294
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38 6 27,694,035 - 27,710,222 (+) NCBI GRCh37 6 27,661,814 - 27,678,001 (+) NCBI HuRef 6 27,469,928 - 27,485,557 (+) NCBI CHM1_1 6 27,664,096 - 27,680,283 (+) NCBI T2T-CHM13v2.0 6 27,563,696 - 27,579,886 (+) NCBI
Sequence:
CGCCAGGGGATGCAAACCCTTCTGCCCCTTTTTGCTACCCCTGAAGCTTACTGTTAGTGGTCGA
hide sequence
Additional Information
