LINC00977 (long intergenic non-protein coding RNA 977) - Rat Genome Database

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Gene: LINC00977 (long intergenic non-protein coding RNA 977) Homo sapiens
Analyze
Symbol: LINC00977
Name: long intergenic non-protein coding RNA 977
RGD ID: 7247373
HGNC Page HGNC
Description: ASSOCIATED WITH leukemia
Type: ncrna
RefSeq Status: VALIDATED
Also known as: RP11-1057N3.1
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8128,634,199 - 129,683,770 (-)EnsemblGRCh38hg38GRCh38
GRCh388129,216,467 - 129,241,240 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh378130,228,713 - 130,253,486 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368130,297,893 - 130,322,678 (-)NCBINCBI36hg18NCBI36
Celera8126,408,000 - 126,432,837 (-)NCBI
Cytogenetic Map8q24.21NCBI
HuRef8125,546,236 - 125,571,009 (-)NCBIHuRef
CHM1_18130,268,976 - 130,293,749 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
leukemia  (EXP)

References
Additional References at PubMed
PMID:11181995   PMID:19656524   PMID:25086665  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:31
Interacting mature miRNAs:31
Transcripts:ENST00000509893
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENST00000446592
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,691 - 129,680,239 (-)Ensembl
RefSeq Acc Id: ENST00000509893
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,241,256 (-)Ensembl
RefSeq Acc Id: ENST00000520048
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,352,429 - 129,574,991 (-)Ensembl
RefSeq Acc Id: ENST00000522667
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,679,135 - 129,683,679 (-)Ensembl
RefSeq Acc Id: ENST00000523151
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,700 - 129,575,016 (-)Ensembl
RefSeq Acc Id: ENST00000625513
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,954,760 - 128,966,001 (-)Ensembl
RefSeq Acc Id: ENST00000628064
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,952,879 - 128,966,001 (-)Ensembl
RefSeq Acc Id: ENST00000630386
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,904,773 - 128,966,001 (-)Ensembl
RefSeq Acc Id: ENST00000642958
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,626,899 - 129,682,097 (-)Ensembl
RefSeq Acc Id: ENST00000643616
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,634,199 - 128,966,001 (-)Ensembl
RefSeq Acc Id: ENST00000644194
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,991,147 - 129,575,020 (-)Ensembl
RefSeq Acc Id: ENST00000644557
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,904,432 - 129,575,020 (-)Ensembl
RefSeq Acc Id: ENST00000645432
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,586,132 - 129,682,087 (-)Ensembl
RefSeq Acc Id: ENST00000646877
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,450 - 129,575,063 (-)Ensembl
RefSeq Acc Id: ENST00000647094
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,628,691 - 129,680,049 (-)Ensembl
RefSeq Acc Id: ENST00000652914
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,369,604 - 129,575,020 (-)Ensembl
RefSeq Acc Id: ENST00000652971
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,575,027 (-)Ensembl
RefSeq Acc Id: ENST00000653363
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,470 - 129,574,772 (-)Ensembl
RefSeq Acc Id: ENST00000653401
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,468 - 129,574,937 (-)Ensembl
RefSeq Acc Id: ENST00000653764
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000654421
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,462 - 129,574,761 (-)Ensembl
RefSeq Acc Id: ENST00000654987
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,930 (-)Ensembl
RefSeq Acc Id: ENST00000655629
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,468 - 129,575,037 (-)Ensembl
RefSeq Acc Id: ENST00000656242
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,450 - 129,575,063 (-)Ensembl
RefSeq Acc Id: ENST00000656316
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,466 - 129,574,962 (-)Ensembl
RefSeq Acc Id: ENST00000657046
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,464 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000657069
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,398,535 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000657251
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,713 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000657400
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,194 - 129,388,106 (-)Ensembl
RefSeq Acc Id: ENST00000657409
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,459 - 129,575,043 (-)Ensembl
RefSeq Acc Id: ENST00000657647
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,574,997 (-)Ensembl
RefSeq Acc Id: ENST00000658740
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,223,370 (-)Ensembl
RefSeq Acc Id: ENST00000658861
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,548,686 (-)Ensembl
RefSeq Acc Id: ENST00000660109
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,575,010 (-)Ensembl
RefSeq Acc Id: ENST00000660163
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,470 - 129,575,020 (-)Ensembl
RefSeq Acc Id: ENST00000660652
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,574,696 (-)Ensembl
RefSeq Acc Id: ENST00000661447
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,575,020 (-)Ensembl
RefSeq Acc Id: ENST00000662033
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,463 - 129,575,063 (-)Ensembl
RefSeq Acc Id: ENST00000662207
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,575,031 (-)Ensembl
RefSeq Acc Id: ENST00000662317
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,465 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000662350
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,931 (-)Ensembl
RefSeq Acc Id: ENST00000662908
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000663066
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,586,552 - 129,683,770 (-)Ensembl
RefSeq Acc Id: ENST00000663521
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,302,123 - 129,574,944 (-)Ensembl
RefSeq Acc Id: ENST00000663572
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,603 - 129,574,750 (-)Ensembl
RefSeq Acc Id: ENST00000663716
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,603 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000663991
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,548,686 (-)Ensembl
RefSeq Acc Id: ENST00000664043
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,469 - 129,574,924 (-)Ensembl
RefSeq Acc Id: ENST00000664162
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,759 (-)Ensembl
RefSeq Acc Id: ENST00000664599
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,468 - 129,574,999 (-)Ensembl
RefSeq Acc Id: ENST00000664632
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000664936
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,369,416 - 129,574,985 (-)Ensembl
RefSeq Acc Id: ENST00000665348
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,275,873 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000665364
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,704 - 129,574,944 (-)Ensembl
RefSeq Acc Id: ENST00000665685
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000665935
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,240,355 - 129,241,288 (-)Ensembl
RefSeq Acc Id: ENST00000666088
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,942 (-)Ensembl
RefSeq Acc Id: ENST00000666317
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,460 - 129,574,997 (-)Ensembl
RefSeq Acc Id: ENST00000666725
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,573,182 (-)Ensembl
RefSeq Acc Id: ENST00000666849
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,468 - 129,574,687 (-)Ensembl
RefSeq Acc Id: ENST00000666882
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,750 (-)Ensembl
RefSeq Acc Id: ENST00000667341
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,691 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000667643
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,595 - 129,575,114 (-)Ensembl
RefSeq Acc Id: ENST00000667962
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,605 - 129,574,795 (-)Ensembl
RefSeq Acc Id: ENST00000667974
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,463 - 129,574,699 (-)Ensembl
RefSeq Acc Id: ENST00000668446
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,468 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000668777
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,749 (-)Ensembl
RefSeq Acc Id: ENST00000668791
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,603 - 129,575,040 (-)Ensembl
RefSeq Acc Id: ENST00000669617
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,470 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000669935
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,573,925 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000669940
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,763 (-)Ensembl
RefSeq Acc Id: ENST00000670054
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,465 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000670148
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,469 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000670386
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,507 - 129,575,037 (-)Ensembl
RefSeq Acc Id: ENST00000670588
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,369,412 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000670803
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,463 - 129,574,762 (-)Ensembl
RefSeq Acc Id: ENST00000671311
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,574,786 (-)Ensembl
RefSeq Acc Id: ENST00000671347
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,468 - 129,574,696 (-)Ensembl
RefSeq Acc Id: ENST00000671439
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,018,562 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000671632
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,574,798 (-)Ensembl
RefSeq Acc Id: ENST00000674580
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,352,219 - 129,574,687 (-)Ensembl
RefSeq Acc Id: ENST00000674599
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,388,264 (-)Ensembl
RefSeq Acc Id: ENST00000674639
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,697 - 129,573,224 (-)Ensembl
RefSeq Acc Id: ENST00000674656
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,606 - 129,574,943 (-)Ensembl
RefSeq Acc Id: ENST00000674711
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,466 - 129,575,017 (-)Ensembl
RefSeq Acc Id: ENST00000674741
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,301,934 - 129,575,020 (-)Ensembl
RefSeq Acc Id: ENST00000674750
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,469 - 129,574,724 (-)Ensembl
RefSeq Acc Id: ENST00000674762
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,699 - 129,574,930 (-)Ensembl
RefSeq Acc Id: ENST00000674766
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,904,430 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000674863
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000674877
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,606 - 129,575,048 (-)Ensembl
RefSeq Acc Id: ENST00000674882
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,549,236 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000674883
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,352,110 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000674893
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,463 - 129,574,963 (-)Ensembl
RefSeq Acc Id: ENST00000674906
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,352,804 - 129,575,063 (-)Ensembl
RefSeq Acc Id: ENST00000674940
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,469 - 129,574,709 (-)Ensembl
RefSeq Acc Id: ENST00000675044
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,697 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000675072
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,369,414 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000675097
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,468 - 129,267,877 (-)Ensembl
RefSeq Acc Id: ENST00000675109
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,574,944 (-)Ensembl
RefSeq Acc Id: ENST00000675166
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,352,107 - 129,575,026 (-)Ensembl
RefSeq Acc Id: ENST00000675183
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,557,239 (-)Ensembl
RefSeq Acc Id: ENST00000675186
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,575,063 (-)Ensembl
RefSeq Acc Id: ENST00000675208
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,264,532 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000675290
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,666,523 - 129,679,193 (-)Ensembl
RefSeq Acc Id: ENST00000675316
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,606 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000675388
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,663,021 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000675393
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,352,232 - 129,575,054 (-)Ensembl
RefSeq Acc Id: ENST00000675432
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,786 - 129,241,205 (-)Ensembl
RefSeq Acc Id: ENST00000675435
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,697 - 129,574,939 (-)Ensembl
RefSeq Acc Id: ENST00000675449
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,466 - 129,575,048 (-)Ensembl
RefSeq Acc Id: ENST00000675496
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,276,919 (-)Ensembl
RefSeq Acc Id: ENST00000675498
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000675506
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,370,893 (-)Ensembl
RefSeq Acc Id: ENST00000675522
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,573,188 (-)Ensembl
RefSeq Acc Id: ENST00000675527
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000675532
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,699 - 129,575,005 (-)Ensembl
RefSeq Acc Id: ENST00000675589
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,574,985 (-)Ensembl
RefSeq Acc Id: ENST00000675599
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,466 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000675658
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,827 - 129,574,939 (-)Ensembl
RefSeq Acc Id: ENST00000675669
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,968,912 - 129,574,967 (-)Ensembl
RefSeq Acc Id: ENST00000675722
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,352,203 - 129,358,837 (-)Ensembl
RefSeq Acc Id: ENST00000675815
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,261,714 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000675867
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,352,122 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000675878
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,920 (-)Ensembl
RefSeq Acc Id: ENST00000675913
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,574,963 (-)Ensembl
RefSeq Acc Id: ENST00000675948
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,702 - 129,575,112 (-)Ensembl
RefSeq Acc Id: ENST00000675970
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,015,330 - 129,574,920 (-)Ensembl
RefSeq Acc Id: ENST00000676030
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,359,264 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000676060
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,468 - 129,575,116 (-)Ensembl
RefSeq Acc Id: ENST00000676069
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,699 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000676099
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,574,761 (-)Ensembl
RefSeq Acc Id: ENST00000676108
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,693 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000676129
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,101,784 - 129,575,015 (-)Ensembl
RefSeq Acc Id: ENST00000676148
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,604 - 129,571,058 (-)Ensembl
RefSeq Acc Id: ENST00000676238
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,253,307 - 129,575,018 (-)Ensembl
RefSeq Acc Id: ENST00000676248
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,720,847 - 129,102,389 (-)Ensembl
RefSeq Acc Id: ENST00000676273
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,351,583 - 129,575,037 (-)Ensembl
RefSeq Acc Id: ENST00000676294
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,463 - 129,270,300 (-)Ensembl
RefSeq Acc Id: ENST00000676350
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,467 - 129,574,930 (-)Ensembl
RefSeq Acc Id: ENST00000676405
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8129,216,450 - 129,575,020 (-)Ensembl
RefSeq Acc Id: ENST00000676407
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8128,827,409 - 129,574,944 (-)Ensembl
RefSeq Acc Id: NR_033916
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388129,216,467 - 129,241,240 (-)NCBI
GRCh378130,228,713 - 130,253,486 (-)NCBI
HuRef8125,546,236 - 125,571,009 (-)NCBI
CHM1_18130,268,976 - 130,293,749 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein EAW92118 (Get FASTA)   NCBI Sequence Viewer  
  EAW92119 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences

Promoters
RGD ID:15096274
Promoter ID:EPDNEWNC_H1107
Type:initiation region
Name:CCDC26_2
Description:CCDC26 long non-coding RNA [Source:HGNCSymbol;Acc:HGNC:28416]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh388129,241,258 - 129,241,318EPDNEWNC

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 8q22.1-24.3(chr8:94682154-145068656)x3 copy number gain See cases [RCV000134353] Chr8:94682154..145068656 [GRCh38]
Chr8:95694382..146294042 [GRCh37]
Chr8:95763558..146264846 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q21.3-24.23(chr8:86300584-137022587)x3 copy number gain See cases [RCV000135621] Chr8:86300584..137022587 [GRCh38]
Chr8:87312813..138034830 [GRCh37]
Chr8:87381929..138104012 [NCBI36]
Chr8:8q21.3-24.23
pathogenic|likely pathogenic
GRCh38/hg38 8q24.13-24.3(chr8:124498498-145068712)x3 copy number gain See cases [RCV000137346] Chr8:124498498..145068712 [GRCh38]
Chr8:125510739..146294098 [GRCh37]
Chr8:125579920..146264902 [NCBI36]
Chr8:8q24.13-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3 copy number gain See cases [RCV000138643] Chr8:241605..145054781 [GRCh38]
Chr8:191605..146280167 [GRCh37]
Chr8:181605..146250971 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.3-24.3(chr8:87931152-145068712)x3 copy number gain See cases [RCV000138551] Chr8:87931152..145068712 [GRCh38]
Chr8:88943380..146294098 [GRCh37]
Chr8:89012496..146264902 [NCBI36]
Chr8:8q21.3-24.3
pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:77480050-145068712)x3 copy number gain See cases [RCV000139036] Chr8:77480050..145068712 [GRCh38]
Chr8:78392286..146294098 [GRCh37]
Chr8:78554841..146264902 [NCBI36]
Chr8:8q21.13-24.3
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:97382873-145070385)x3 copy number gain See cases [RCV000140447] Chr8:97382873..145070385 [GRCh38]
Chr8:98395101..146295771 [GRCh37]
Chr8:98464277..146266575 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q11.1-24.3(chr8:46031340-139285494)x3 copy number gain See cases [RCV000139539] Chr8:46031340..139285494 [GRCh38]
Chr8:46942962..140297737 [GRCh37]
Chr8:47062127..140366919 [NCBI36]
Chr8:8q11.1-24.3
pathogenic
GRCh38/hg38 8q22.3-24.3(chr8:100867343-145070385)x3 copy number gain See cases [RCV000141694] Chr8:100867343..145070385 [GRCh38]
Chr8:101879571..146295771 [GRCh37]
Chr8:101948747..146266575 [NCBI36]
Chr8:8q22.3-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3 copy number gain See cases [RCV000141808] Chr8:208048..145070385 [GRCh38]
Chr8:158048..146295771 [GRCh37]
Chr8:148048..146266575 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p21.3-q24.3(chr8:21291522-145070385)x3 copy number gain See cases [RCV000142021] Chr8:21291522..145070385 [GRCh38]
Chr8:21149033..146295771 [GRCh37]
Chr8:21193313..146266575 [NCBI36]
Chr8:8p21.3-q24.3
pathogenic
GRCh38/hg38 8q22.3-24.3(chr8:103306336-145068712)x3 copy number gain See cases [RCV000142810] Chr8:103306336..145068712 [GRCh38]
Chr8:104318564..146294098 [GRCh37]
Chr8:104387740..146264902 [NCBI36]
Chr8:8q22.3-24.3
pathogenic|likely pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3 copy number gain See cases [RCV000142858] Chr8:226452..145068712 [GRCh38]
Chr8:176452..146294098 [GRCh37]
Chr8:166452..146264902 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:78614077-145054634)x3 copy number gain See cases [RCV000142597] Chr8:78614077..145054634 [GRCh38]
Chr8:79526312..146280020 [GRCh37]
Chr8:79688867..146250824 [NCBI36]
Chr8:8q21.13-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000148092] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.2-24.3(chr8:85765999-145070385)x3 copy number gain See cases [RCV000143659] Chr8:85765999..145070385 [GRCh38]
Chr8:86778228..146295771 [GRCh37]
Chr8:86863079..146266575 [NCBI36]
Chr8:8q21.2-24.3
pathogenic
GRCh38/hg38 8q24.13-24.3(chr8:124514090-145054634)x3 copy number gain See cases [RCV000148117] Chr8:124514090..145054634 [GRCh38]
Chr8:125526331..146280020 [GRCh37]
Chr8:125595512..146250824 [NCBI36]
Chr8:8q24.13-24.3
pathogenic
GRCh38/hg38 8q24.21-24.3(chr8:128220912-145049449)x3 copy number gain See cases [RCV000050830] Chr8:128220912..145049449 [GRCh38]
Chr8:129233158..146274835 [GRCh37]
Chr8:129302340..146245639 [NCBI36]
Chr8:8q24.21-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3 copy number gain See cases [RCV000051206] Chr8:241530..145049449 [GRCh38]
Chr8:191530..146274835 [GRCh37]
Chr8:181530..146245639 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q23.3-24.3(chr8:113580402-145054634)x3 copy number gain See cases [RCV000050638] Chr8:113580402..145054634 [GRCh38]
Chr8:114592631..146280020 [GRCh37]
Chr8:114661807..146250824 [NCBI36]
Chr8:8q23.3-24.3
pathogenic
GRCh38/hg38 8q24.21-24.22(chr8:129176782-134170188)x1 copy number loss See cases [RCV000050751] Chr8:129176782..134170188 [GRCh38]
Chr8:130189028..135182431 [GRCh37]
Chr8:130258210..135251613 [NCBI36]
Chr8:8q24.21-24.22
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:95606052-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053677]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053677]|See cases [RCV000053677] Chr8:95606052..145054775 [GRCh38]
Chr8:96618280..146280161 [GRCh37]
Chr8:96687456..146250965 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q24.13-24.3(chr8:124514090-145054634)x3 copy number gain See cases [RCV000053678] Chr8:124514090..145054634 [GRCh38]
Chr8:125526331..146280020 [GRCh37]
Chr8:125595512..146250824 [NCBI36]
Chr8:8q24.13-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000053602] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:244417-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|See cases [RCV000053604] Chr8:244417..145054775 [GRCh38]
Chr8:194417..146280161 [GRCh37]
Chr8:184417..146250965 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q24.21-24.23(chr8:126626164-137169427)x1 copy number loss See cases [RCV000054306] Chr8:126626164..137169427 [GRCh38]
Chr8:127638409..138181670 [GRCh37]
Chr8:127707591..138250852 [NCBI36]
Chr8:8q24.21-24.23
pathogenic

Additional Information

Database Acc Id Source(s)
COSMIC LINC00977 COSMIC
Ensembl Genes ENSG00000229140 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000509893 ENTREZGENE
GTEx ENSG00000229140 GTEx
HGNC ID HGNC:48902 ENTREZGENE
Human Proteome Map LINC00977 Human Proteome Map
NCBI Gene LINC00977 ENTREZGENE
RNAcentral URS000075EF7A RNACentral