HNRNPA3P13 (heterogeneous nuclear ribonucleoprotein A3 pseudogene 13) - Rat Genome Database

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Gene: HNRNPA3P13 (heterogeneous nuclear ribonucleoprotein A3 pseudogene 13) Homo sapiens
Analyze
Symbol: HNRNPA3P13
Name: heterogeneous nuclear ribonucleoprotein A3 pseudogene 13
RGD ID: 7246748
HGNC Page HGNC:48759
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HNRNPA3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38482,128,528 - 82,131,631 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl482,128,535 - 82,129,656 (+)EnsemblGRCh38hg38GRCh38
GRCh37483,049,681 - 83,052,784 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36483,268,605 - 83,271,890 (+)NCBINCBI36Build 36hg18NCBI36
Celera480,340,398 - 80,343,501 (+)NCBICelera
Cytogenetic Map4q21.22NCBI
HuRef478,790,694 - 78,793,797 (+)NCBIHuRef
CHM1_1483,026,136 - 83,029,239 (+)NCBICHM1_1
T2T-CHM13v2.0485,458,083 - 85,461,186 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15776420  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:129
Interacting mature miRNAs:132
Transcripts:ENST00000512222
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 1 3 1 2 1 1 3 1 2
Below cutoff 325 343 246 51 211 23 710 266 492 26 298 277 29 173 475

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000512222
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl482,128,535 - 82,129,656 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HNRNPA3P13 COSMIC
Ensembl Genes ENSG00000250826 Ensembl
GTEx ENSG00000250826 GTEx
HGNC ID HGNC:48759 ENTREZGENE
Human Proteome Map HNRNPA3P13 Human Proteome Map
NCBI Gene HNRNPA3P13 ENTREZGENE