Gene: HCCAT5 (hepatocellular carcinoma associated transcript 5) Homo sapiens |
|
Analyze |
|
Symbol: |
HCCAT5 |
Name: |
hepatocellular carcinoma associated transcript 5 |
RGD ID: |
7244818 |
HGNC Page |
HGNC:48612 |
Description: |
|
Type: |
ncrna (Ensembl: lncRNA)
|
RefSeq Status: |
VALIDATED |
Previously known as: |
FJ222407; hepatocellular carcinoma associated transcript 5 (non-protein coding); HTA; RP11-346C20.2 |
Allele / Splice: |
See ClinVar data |
Latest Assembly: |
GRCh38 - Human Genome Assembly GRCh38 |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 16 | 73,092,349 - 73,093,774 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 16 | 73,092,349 - 73,099,337 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 16 | 73,126,248 - 73,127,673 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 16 | 71,684,025 - 71,685,174 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 16 | 57,440,789 - 57,442,214 (+) | NCBI | | Celera | | | Cytogenetic Map | 16 | q22.3 | NCBI | | | | | HuRef | 16 | 58,894,249 - 58,895,674 (+) | NCBI | | HuRef | | | CHM1_1 | 16 | 74,539,058 - 74,540,483 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 16 | 78,910,078 - 78,911,503 (+) | NCBI | | T2T-CHM13v2.0 | | |
|
JBrowse: |
View Region in Genome Browser (JBrowse)
|
Model |
|
References
Additional References at PubMed
Genomics
miRNA Target Status
Predicted Target Of
Count of predictions: | 121 | Count of miRNA genes: | 116 | Interacting mature miRNAs: | 121 | Transcripts: | ENST00000569990 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
|
alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
sensory system |
adipose tissue |
appendage |
High |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Medium |
|
3
|
|
|
|
|
21
|
|
1
|
|
|
|
|
|
2
|
Low |
40
|
1200
|
35
|
|
3
|
1
|
799
|
72
|
206
|
10
|
42
|
88
|
|
46
|
714
|
Below cutoff |
1179
|
523
|
681
|
122
|
207
|
82
|
1852
|
1287
|
2090
|
231
|
712
|
810
|
42
|
653
|
1296
|
Sequence
RefSeq Acc Id: |
ENST00000569990 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 16 | 73,092,349 - 73,093,774 (+) | Ensembl |
|
RefSeq Acc Id: |
ENST00000642127 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 16 | 73,092,690 - 73,099,337 (+) | Ensembl |
|
RefSeq Acc Id: |
ENST00000647808 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 16 | 73,092,690 - 73,094,546 (+) | Ensembl |
|
RefSeq Acc Id: |
ENST00000659438 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 16 | 73,092,508 - 73,093,772 (+) | Ensembl |
|
RefSeq Acc Id: |
ENST00000662824 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 16 | 73,092,508 - 73,093,766 (+) | Ensembl |
|
RefSeq Acc Id: |
NR_027756 |
RefSeq Status: |
VALIDATED |
Type: |
NON-CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38 | 16 | 73,092,349 - 73,093,774 (+) | NCBI | GRCh37 | 16 | 73,126,248 - 73,127,673 (+) | NCBI | HuRef | 16 | 58,894,249 - 58,895,674 (+) | NCBI | CHM1_1 | 16 | 74,539,058 - 74,540,483 (+) | NCBI | T2T-CHM13v2.0 | 16 | 78,910,078 - 78,911,503 (+) | NCBI |
|
Sequence: |
AAGTTTAAGACAGCCTGGTGAGGCCCAGAGCCTCACCAGTCCCCCAGAAAACGGAGTATTGTTT CCATCCAAACCTTGCACTGAAAGGAGCCTGTCAGCAGGAAGTGACCTCGTGAGACAACTGTGGG GAGAGCAAAGGGCCGGGGAGAGAAAGGCCTCATTCTCACTGCAAACAGGAAAAGGAAAGAGAAA AAGCAAGCTCTGTCTCCACACAAGGTTTGCTGGGCTGGCTATGAACTGTTCCAGTACGTTCCAT CAAATAGACGCCTTCATAGAATCAAGCCGAGCGCGAACGCCGTGTCTGGGGCTCCCACTCCCGG GACACACACGCGGGCTGGCTTACACATGCTCTTGCTCTCTCGCGCTCTGGGAGAGCGCTTATAT GGGCTTCATGAGGCTAAGTAATAAACACTTTGTCTTCACCCTGCTATTTATGGGTTGCTTGGGG CATCCTGTGCTCTCCACTGCCCTTACCTGAACAGACGGCTCATGCAGACCCGGAGTTTAATAGG GACAACAGTAAATCTGAGAGGCTGTGTGTGTCCCACGCGCTCCTGTTTTCCCAGCCACCCATGC TAGTTGCAGAGAAAAGCCAACCTGTATCCCTTCGTTTATGCTCTGTGTGCCCTTCCTGGAGAGA TCCCTTCATTCTTCAGCAATGGATCAAAGAACTCTGAAAACAAGAACAACCCCGACAGCTGCAA ACCACGAGCCCTCACCTCCAGCAGAGGTTTTCGGGAAACTCTGGACGACCACGCGCATGCAGAG GGCTCTCAGAGCTTCCAGGTCCTGTAAGAAGAGATGGAGTCATAGCTGCGCCCTGTCCACTCTC GGGCTGTCACACAAGCCTGGAGCCCAGCCATTTCTCGGCCTTGTCTTCATCTTGGGCTAACCGG TCGTCTCCTGCAAACAGACAGCACGGAGAAGGATGAGTGAACTCGGCCTCTCCCCACAGAATAC AGTTCGCCATTACAGCGCTGATTAAATACAGGACATTATCTCACCATAATGCCCTCCTGGCGGC GTTCCCAGGAAAATTCTAACTAATCATAAAAATAGAAAGAAAAACGCAACCTAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAA
hide sequence
|
Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2018-05-22 |
HCCAT5 |
hepatocellular carcinoma associated transcript 5 |
|
hepatocellular carcinoma associated transcript 5 (non-protein coding) |
Symbol and/or name change |
5135510 |
APPROVED |
|
|