RPA2P3 (replication protein A2 pseudogene 3) - Rat Genome Database

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Gene: RPA2P3 (replication protein A2 pseudogene 3) Homo sapiens
Analyze
Symbol: RPA2P3
Name: replication protein A2 pseudogene 3
RGD ID: 7241105
HGNC Page HGNC:45118
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: RPA2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811100,336,750 - 100,337,874 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11100,336,856 - 100,337,625 (+)EnsemblGRCh38hg38GRCh38
GRCh3711100,207,482 - 100,208,606 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1197,376,947 - 97,377,700 (+)NCBICelera
Cytogenetic Map11q22.1NCBI
HuRef1196,143,736 - 96,144,489 (+)NCBIHuRef
CHM1_111100,090,908 - 100,091,661 (+)NCBICHM1_1
T2T-CHM13v2.011100,346,025 - 100,347,149 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:108
Interacting mature miRNAs:109
Transcripts:ENST00000533268
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 8 8 2 317 2 21 15 30 8
Below cutoff 126 205 336 34 122 27 308 180 567 20 216 346 7 64 234

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000533268
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11100,336,856 - 100,337,625 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPA2P3 COSMIC
Ensembl Genes ENSG00000255547 Ensembl
GTEx ENSG00000255547 GTEx
HGNC ID HGNC:45118 ENTREZGENE
Human Proteome Map RPA2P3 Human Proteome Map
NCBI Gene RPA2P3 ENTREZGENE