SOD1P2 (superoxide dismutase 1 pseudogene 2) - Rat Genome Database

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Gene: SOD1P2 (superoxide dismutase 1 pseudogene 2) Homo sapiens
Analyze
Symbol: SOD1P2
Name: superoxide dismutase 1 pseudogene 2
RGD ID: 7241101
HGNC Page HGNC:45135
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: superoxide dismutase 1, soluble pseudogene 2
Related Functional Gene: SOD1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381651,107,580 - 51,108,020 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1651,107,571 - 51,108,021 (+)EnsemblGRCh38hg38GRCh38
GRCh371651,141,491 - 51,141,931 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16q12.1NCBI
HuRef1637,029,581 - 37,030,021 (+)NCBIHuRef
CHM1_11652,548,829 - 52,549,269 (+)NCBICHM1_1
T2T-CHM13v2.01656,905,431 - 56,905,871 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 6 5 1 5 1 1 2 1 5 1 1
Below cutoff 14 27 126 107 11 106 24 11 30 11 87 6 1 4 15

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000563903
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1651,107,571 - 51,108,021 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SOD1P2 COSMIC
Ensembl Genes ENSG00000261282 Ensembl, ENTREZGENE
GTEx ENSG00000261282 GTEx
HGNC ID HGNC:45135 ENTREZGENE
Human Proteome Map SOD1P2 Human Proteome Map
NCBI Gene SOD1P2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-17 SOD1P2  superoxide dismutase 1 pseudogene 2    superoxide dismutase 1, soluble pseudogene 2  Symbol and/or name change 5135510 APPROVED