PRDX2P2 (peroxiredoxin 2 pseudogene 2) - Rat Genome Database

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Gene: PRDX2P2 (peroxiredoxin 2 pseudogene 2) Homo sapiens
Analyze
Symbol: PRDX2P2
Name: peroxiredoxin 2 pseudogene 2
RGD ID: 7205014
HGNC Page HGNC:44967
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: PRDX2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381034,965,000 - 34,966,454 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1034,965,069 - 34,966,259 (+)EnsemblGRCh38hg38GRCh38
GRCh371035,253,928 - 35,255,382 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361035,294,003 - 35,295,193 (+)NCBINCBI36Build 36hg18NCBI36
Celera1035,019,362 - 35,020,549 (+)NCBICelera
Cytogenetic Map10p11.21NCBI
HuRef1034,972,727 - 34,973,915 (+)NCBIHuRef
CHM1_11035,255,233 - 35,256,420 (+)NCBICHM1_1
T2T-CHM13v2.01034,993,533 - 34,994,987 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:259
Count of miRNA genes:245
Interacting mature miRNAs:255
Transcripts:ENST00000451920
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 32 2 14 8 106 9 69 15 33 19 70 85 1 2
Below cutoff 148 75 121 28 135 27 284 98 160 88 388 239 10 19 67 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000451920
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1034,965,069 - 34,966,259 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PRDX2P2 COSMIC
Ensembl Genes ENSG00000213724 Ensembl
GTEx ENSG00000213724 GTEx
HGNC ID HGNC:44967 ENTREZGENE
Human Proteome Map PRDX2P2 Human Proteome Map
NCBI Gene PRDX2P2 ENTREZGENE