HSPA8P8 (heat shock protein family A (Hsp70) member 8 pseudogene 8) - Rat Genome Database

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Gene: HSPA8P8 (heat shock protein family A (Hsp70) member 8 pseudogene 8) Homo sapiens
Analyze
Symbol: HSPA8P8
Name: heat shock protein family A (Hsp70) member 8 pseudogene 8
RGD ID: 7204989
HGNC Page HGNC:44923
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HSPA8  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38710,451,236 - 10,453,497 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl710,451,311 - 10,453,252 (+)EnsemblGRCh38hg38GRCh38
GRCh37710,490,863 - 10,493,124 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera710,466,090 - 10,468,354 (+)NCBICelera
Cytogenetic Map7p21.3NCBI
HuRef710,348,448 - 10,350,712 (+)NCBIHuRef
CHM1_1710,490,441 - 10,492,705 (+)NCBICHM1_1
T2T-CHM13v2.0710,581,534 - 10,583,795 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2710,544,619 - 10,546,883 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9847074   PMID:12690205  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:107
Interacting mature miRNAs:108
Transcripts:ENST00000419827
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage pharyngeal arch
High
Medium 4 1
Low 7 3 14 11 3 9 6 4 19 7 7 9 2 2 2
Below cutoff 468 499 317 93 254 61 718 517 749 102 350 363 37 189 515

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000419827
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl710,451,311 - 10,453,252 (+)Ensembl
Protein Sequences
GenBank Protein EAL24298 (Get FASTA)   NCBI Sequence Viewer  
  EAL24299 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC HSPA8P8 COSMIC
Ensembl Genes ENSG00000229091 Ensembl, ENTREZGENE
GTEx ENSG00000229091 GTEx
HGNC ID HGNC:44923 ENTREZGENE
Human Proteome Map HSPA8P8 Human Proteome Map
NCBI Gene HSPA8P8 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 HSPA8P8  heat shock protein family A (Hsp70) member 8 pseudogene 8    heat shock 70kDa protein 8 pseudogene 8  Symbol and/or name change 5135510 APPROVED