Gene: PANDAR (promoter of CDKN1A antisense DNA damage activated RNA) Homo sapiens
Analyze
Symbol:
PANDAR
Name:
promoter of CDKN1A antisense DNA damage activated RNA
RGD ID:
7204600
HGNC Page
HGNC:44048
Description:
This gene produces a non-coding RNA that is thought to regulate the response to DNA damage. This gene is induced by tumor protein p53 and interacts with and modulates the activity of a transcription factor that induce pro-apoptotic genes. Deregulation of this gene is associated with cancer progression. [provided by RefSeq, Dec 2017]
Type:
ncrna (Ensembl: lncRNA)
RefSeq Status:
REVIEWED
Previously known as:
PANDA
Allele / Splice:
See ClinVar data
Latest Assembly:
GRCh38 - Human Genome Assembly GRCh38
Position:
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 6 36,673,621 - 36,675,126 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 6 36,673,621 - 36,675,126 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 6 36,641,398 - 36,642,903 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Cytogenetic Map 6 p21.2 NCBI HuRef 6 36,359,761 - 36,361,266 (-) NCBI HuRef CHM1_1 6 36,643,154 - 36,644,659 (-) NCBI CHM1_1 T2T-CHM13v2.0 6 36,494,265 - 36,495,770 (-) NCBI T2T-CHM13v2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Additional References at PubMed
Genomics
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system
circulatory system
endocrine system
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
adipose tissue
appendage
entire extraembryonic component
High
Medium
Low
1
8
1
12
1
1
11
1
3
7
Below cutoff
61
93
54
23
43
17
139
57
97
4
77
38
6
33
96
1
Sequence
RefSeq Acc Id:
ENST00000629595
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 6 36,673,621 - 36,675,126 (-) Ensembl
RefSeq Acc Id:
NR_109836
RefSeq Status:
REVIEWED
Type:
NON-CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38 6 36,673,621 - 36,675,126 (-) NCBI HuRef 6 36,359,761 - 36,361,266 (-) NCBI CHM1_1 6 36,643,154 - 36,644,659 (-) NCBI T2T-CHM13v2.0 6 36,494,265 - 36,495,770 (-) NCBI
Sequence:
ACGAATTCTTTCAGGAATGCCGCAGATGTACATGCTCCCGCAGATCTATATTTTCCAATGTTGT TAACATCAGCCAGCTGGCAATCTACAACCTGTCTTGTACAATGTTTGAAGAGAGGCATCCTCCA GACACGGTCCCCTGTTTCAATGCTGGCCTCGAAGAGCTTGTTCCAGAGCCAGGATGAATTGGTA AAGACCCCAGTGGCACCTGACCCCAAAGCTACATCTATGACACCTGTTAAGGTGGTGGCATTGA GGATGACCTTCGGGTTAAATGTGTGCACGTAACAGAGCGCATCAGCCAGTATGAGCCTCCCCTC AGCATCAGTGTTACCAACCTGGATGGTCTTCCTGTTCCTGGCTCTAACAACATCCCCCAGCTTG TTGGCCTTGCCGCTGGGCATGTTTTCACAGAGGGGCCAGACCTATAATATTAATGGGCAAACTG AGATTTGCAGCAGACACAATGGCTGAGCATATAGTTGTAGCTCCTCCCATGTCGGCCCTCATGA GGTCCATATTTGCAGAAGCCTTGATGGAGATACCACCACTGTCAAAGGTAATTCCTTTCCCAAC AAACAAGGGGTGGTTTGTCTGCATTGGGGCTGCCTATGTAGTGAATTTCCAAGAAGACTGAGGG CTCGTCAGATCCTTTGGCCACACTGAGGAATGATCCCATTGCCTGTTCCTCAATCCAAGACCTG GGTCTGATATGAAACTCGGTTTACTACTAGCGCTTTTGAGATTCTTCTCAATAATTTCGGCAAA TCTGGTTGGCATCATCTCGCTGGCTGGCGTCTCCATCATGCCAAGTTCTGCCCAGAAGCAAACA GGACTCCTTTCTGCCAGGCCTCCTGATCCCCAGTTCCATAGAGCTTCACCGACATAGCCATCTT CTTTTTTTGCTTTAGGTCATCGTATTCATAGAGACCAAGCACCGCGCCCTCCTCAGCAGCCTGA GCATCTCTACAGGGATCCACCTCCACGGAAGAGAGCTCCAGGTCTTGAATCTGCCTGCATCCTG CTGCAACAGCAGCTCTGATGTTTTCTTTGCCTTCCTGCCAGTTTTCCTGTTCGTCGATTCTGGC TGCCTTTTTGCCGAGGCCAACTAGCACCACGCTGGGGAAGTCCTGATGCAGACCATAAAAGTTT CGAGTCTTGCCTGCCTTCAGAGGTGGTCCAGATATGTTCAAAGTCTCTCTCAGCTTTCCAGCTA TCAATTTATCAAGATTCTCTCCTGCACTTGTGAACTGTGGCACATCATCTTCTTTTTCTTTGGA ATAGATTCCTAAAACAAGGCCCTTCGTCATGTCTGCAGCGGAGAGACCCCGGCTCCCGAAACAT CTCACGGCCAGACGTCAGACGATGACTCGCCCCACCCAATGTTTGTATTTTAGTAGAGAGAGGG TTTCTCTATGTTGGTCAGGCTGGTCTCAAACCTCGACCTCAGTTGATCTGTCTGCCTCGGTCTC CCAAAGTGCTGAGATTACAGGCGTGAGCCACTGC
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Additional Information