PANDAR (promoter of CDKN1A antisense DNA damage activated RNA) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: PANDAR (promoter of CDKN1A antisense DNA damage activated RNA) Homo sapiens
Analyze
Symbol: PANDAR
Name: promoter of CDKN1A antisense DNA damage activated RNA
RGD ID: 7204600
HGNC Page HGNC:44048
Description: This gene produces a non-coding RNA that is thought to regulate the response to DNA damage. This gene is induced by tumor protein p53 and interacts with and modulates the activity of a transcription factor that induce pro-apoptotic genes. Deregulation of this gene is associated with cancer progression. [provided by RefSeq, Dec 2017]
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: REVIEWED
Previously known as: PANDA
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38636,673,621 - 36,675,126 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl636,673,621 - 36,675,126 (-)EnsemblGRCh38hg38GRCh38
GRCh37636,641,398 - 36,642,903 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6p21.2NCBI
HuRef636,359,761 - 36,361,266 (-)NCBIHuRef
CHM1_1636,643,154 - 36,644,659 (-)NCBICHM1_1
T2T-CHM13v2.0636,494,265 - 36,495,770 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21112873   PMID:21642992   PMID:25719249   PMID:26054684   PMID:26898439   PMID:26927017   PMID:27069137   PMID:27206339   PMID:27629879   PMID:28011477   PMID:28106228   PMID:28176943  
PMID:28545465   PMID:28646235   PMID:28652769   PMID:28874676   PMID:28886528   PMID:28976505   PMID:29066211   PMID:29131264   PMID:29226461   PMID:29416011   PMID:29434205   PMID:30114626  
PMID:30375398   PMID:30775883   PMID:31104011   PMID:32791990   PMID:36073766  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3
pathogenic

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 8 1 12 1 1 11 1 3 7
Below cutoff 61 93 54 23 43 17 139 57 97 4 77 38 6 33 96 1

Sequence


RefSeq Acc Id: ENST00000629595
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl636,673,621 - 36,675,126 (-)Ensembl
RefSeq Acc Id: NR_109836
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38636,673,621 - 36,675,126 (-)NCBI
HuRef636,359,761 - 36,361,266 (-)NCBI
CHM1_1636,643,154 - 36,644,659 (-)NCBI
T2T-CHM13v2.0636,494,265 - 36,495,770 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC PANDAR COSMIC
Ensembl Genes ENSG00000281450 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000629595 ENTREZGENE
GTEx ENSG00000281450 GTEx
HGNC ID HGNC:44048 ENTREZGENE
Human Proteome Map PANDAR Human Proteome Map
NCBI Gene PANDAR ENTREZGENE
OMIM 617179 OMIM
RNAcentral URS0000524E5C RNACentral