Gene: n-R5s138 (nuclear encoded rRNA 5S 138) Mus musculus |
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Analyze |
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Symbol: |
n-R5s138 |
Name: |
nuclear encoded rRNA 5S 138 |
RGD ID: |
7179138 |
MGI Page |
MGI |
Description: |
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Type: |
rrna
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RefSeq Status: |
VALIDATED |
Previously known as: |
Rn5s21 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
GRCm39 - Mouse Genome Assembly GRCm39 |
Position: |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 8 | 124,329,984 - 124,330,104 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 8 | 124,329,986 - 124,330,104 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 8 | 123,603,245 - 123,603,365 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 8 | 123,603,247 - 123,603,365 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | Cytogenetic Map | 8 | E1 | NCBI | | | | | cM Map | 8 | 72.1 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Additional References at PubMed
Genomics
Comparative Map Data
n-R5s138 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 8 | 124,329,984 - 124,330,104 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 8 | 124,329,986 - 124,330,104 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 8 | 123,603,245 - 123,603,365 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 8 | 123,603,247 - 123,603,365 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | Cytogenetic Map | 8 | E1 | NCBI | | | | | cM Map | 8 | 72.1 | NCBI | | | | |
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RNA5S6 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 1 | 228,621,445 - 228,621,565 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 228,621,447 - 228,621,565 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 228,757,192 - 228,757,312 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 228,757,192 - 228,757,312 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 1 | 202,049,252 - 202,049,372 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | q42.13 | NCBI | | | | | HuRef | 1 | 199,270,748 - 199,270,868 (-) | NCBI | | HuRef | | | CHM1_1 | 1 | 230,042,963 - 230,043,083 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 227,811,620 - 227,811,740 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Rna5s6 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 19 | 68,487,948 - 68,488,066 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 19 | 51,579,501 - 51,579,619 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 19 | 51,579,501 - 51,579,619 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Cytogenetic Map | 19 | q12 | NCBI | | | | |
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LOC119879819 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ROS_Cfam_1.0 | 4 | 10,499,456 - 10,499,574 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 4 | 10,499,456 - 10,499,574 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UNSW_CanFamBas_1.0 | 4 | 10,604,522 - 10,604,640 (+) | NCBI | | UNSW_CanFamBas_1.0 | | |
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miRNA Target Status
Predicted Target Of
Count of predictions: | 208 | Count of miRNA genes: | 190 | Interacting mature miRNAs: | 207 | Transcripts: | ENSMUST00000179476 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
QTLs in Region (GRCm39)
1357708 | Orq1_m | ovulation rate QTL 1 (mouse) | | | Not determined | | 8 | 71740461 | 124622354 | Mouse | 4142023 | W3q5_m | weight 3 weeks QTL 5 (mouse) | | | Not determined | | | 71740461 | 124622354 | Mouse | 27095912 | Pglq14_m | pelvic girdle length QTL 14, 16 week (mouse) | | | | | 8 | 74126628 | 126826739 | Mouse | 27226796 | Scvln16_m | sacral vertebrae length 2, 16 week (mouse) | | | | | 8 | 89726628 | 130027694 | Mouse | 1357494 | Obsty2_m | obesity 2 (mouse) | | | Not determined | | 8 | 96245241 | 129745061 | Mouse | 12880431 | Fgf23lq2_m | FGF23 serum level QTL 2 (mouse) | | | | | 8 | 97626632 | 130127694 | Mouse | 11252141 | Fdr2_m | fat response to dietary restriction 2 (mouse) | | | | | 8 | 98390634 | 130127694 | Mouse | 1301481 | Lith11_m | lithogenic gene 11 (mouse) | | | Not determined | | 8 | 98563635 | 130127694 | Mouse | 1302105 | Im1_m | Immunoregulatory 1 (mouse) | | | Not determined | | 8 | 99828531 | 130127694 | Mouse | 1301080 | Sluc9_m | susceptibility to lung cancer 9 (mouse) | | | Not determined | | 8 | 99828531 | 130127694 | Mouse | 4141435 | Fbtq3_m | femoral bone trait QTL 3 (mouse) | | | Not determined | | 8 | 100965309 | 130127694 | Mouse | 1301316 | Dntcs1_m | dental caries susceptibility 1 (mouse) | | | Not determined | | 8 | 103443553 | 127781786 | Mouse | 11532691 | Sluc38_m | susceptibility to lung cancer 38 (mouse) | | | | | 8 | 105033977 | 130127694 | Mouse | 11532692 | Sluc38a_m | susceptibility to lung cancer 38a (mouse) | | | | | 8 | 105033977 | 130127694 | Mouse | 14746994 | Manh65_m | mandible shape 65 (mouse) | | | | | 8 | 106489629 | 130127694 | Mouse | 10412273 | Fcd1_m | functional capillary density 1 (mouse) | | | Not determined | | 8 | 110415083 | 130127694 | Mouse | 10412274 | Leci1_m | leukocyte endothelial cell interactions 1 (mouse) | | | Not determined | | 8 | 110415083 | 130127694 | Mouse | 12904938 | Edlmmq7_m | extensor digitorum longus muscle mass QTL 7 (mouse) | | | | | 8 | 111481497 | 130127694 | Mouse | 12904960 | Gmmq6_m | gastrocnemius muscle mass QTL 6 (mouse) | | | | | 8 | 111481497 | 130127694 | Mouse | 4141546 | Mrdq3_m | modifier of retinal degeneration QTL 3 (mouse) | | | Not determined | | | 114439420 | 126055880 | Mouse | 26884375 | Skwq2_m | skull length QTL 2, 5 week (mouse) | | | | | 8 | 120726739 | 130027694 | Mouse | |