n-R5s138 (nuclear encoded rRNA 5S 138) - Rat Genome Database

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Gene: n-R5s138 (nuclear encoded rRNA 5S 138) Mus musculus
Analyze
Symbol: n-R5s138
Name: nuclear encoded rRNA 5S 138
RGD ID: 7179138
MGI Page MGI
Description:
Type: rrna
RefSeq Status: VALIDATED
Previously known as: Rn5s21
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,329,984 - 124,330,104 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,329,986 - 124,330,104 (-)EnsemblGRCm39 Ensembl
GRCm388123,603,245 - 123,603,365 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,603,247 - 123,603,365 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map8E1NCBI
cM Map872.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:8078409   PMID:8194767   PMID:18953034  


Genomics

Comparative Map Data
n-R5s138
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,329,984 - 124,330,104 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,329,986 - 124,330,104 (-)EnsemblGRCm39 Ensembl
GRCm388123,603,245 - 123,603,365 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,603,247 - 123,603,365 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map8E1NCBI
cM Map872.1NCBI
RNA5S6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381228,621,445 - 228,621,565 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1228,621,447 - 228,621,565 (-)EnsemblGRCh38hg38GRCh38
GRCh371228,757,192 - 228,757,312 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361228,757,192 - 228,757,312 (-)NCBINCBI36Build 36hg18NCBI36
Celera1202,049,252 - 202,049,372 (-)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1199,270,748 - 199,270,868 (-)NCBIHuRef
CHM1_11230,042,963 - 230,043,083 (-)NCBICHM1_1
T2T-CHM13v2.01227,811,620 - 227,811,740 (-)NCBIT2T-CHM13v2.0
Rna5s6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,487,948 - 68,488,066 (-)NCBIGRCr8
mRatBN7.21951,579,501 - 51,579,619 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,579,501 - 51,579,619 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map19q12NCBI
LOC119879819
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0410,499,456 - 10,499,574 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl410,499,456 - 10,499,574 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.0410,604,522 - 10,604,640 (+)NCBIUNSW_CanFamBas_1.0

Variants

.
Variants in n-R5s138
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:208
Count of miRNA genes:190
Interacting mature miRNAs:207
Transcripts:ENSMUST00000179476
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8111481497130127694Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse
4141546Mrdq3_mmodifier of retinal degeneration QTL 3 (mouse)Not determined114439420126055880Mouse
26884375Skwq2_mskull length QTL 2, 5 week (mouse)8120726739130027694Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_046145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000179476
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl8123,603,247 - 123,603,365 (-)Ensembl
RefSeq Acc Id: ENSMUST00000240112
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8124,329,986 - 124,330,104 (-)Ensembl
RefSeq Acc Id: NR_046145
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398124,329,984 - 124,330,104 (-)NCBI
GRCm388123,603,245 - 123,603,365 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000095183 Ensembl
  ENSMUSG00000118796 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000240112 ENTREZGENE
MGD MGI:4421994 ENTREZGENE
NCBI Gene n-R5s138 ENTREZGENE
PhenoGen n-R5s138 PhenoGen
RNAcentral URS00000F9D45 RNACentral