Rhox4a2 (reproductive homeobox 4A2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rhox4a2 (reproductive homeobox 4A2) Mus musculus
Analyze
No known orthologs.
Symbol: Rhox4a2
Name: reproductive homeobox 4A2
RGD ID: 7178918
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Gm21098; paired mesoderm homeobox protein 2-like; rhox homeobox family member 1-like; uncharacterized protein Rhox4a2
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X36,572,513 - 36,577,274 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX36,572,501 - 36,577,274 (+)EnsemblGRCm39 Ensembl
GRCm38X37,390,860 - 37,395,621 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX37,390,848 - 37,395,621 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXA3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rhox4a2
99 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2060678347179225Mouse
12738418Lfibq12_mliver fibrosis QTL 12 (mouse)X2572817443635700Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse

Markers in Region
BB193628  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA3.3UniSTS
Cytogenetic MapXA3.2UniSTS
Whitehead/MRC_RHX463.48UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000179915   ⟹   ENSMUSP00000136542
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX36,572,501 - 36,577,274 (+)Ensembl
GRCm38.p6 EnsemblX37,390,848 - 37,395,621 (+)Ensembl
RefSeq Acc Id: XM_003688971   ⟹   XP_003689019
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X36,572,513 - 36,577,274 (+)NCBI
GRCm38X37,390,860 - 37,395,621 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006541565   ⟹   XP_006541628
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X36,572,513 - 36,577,274 (+)NCBI
GRCm38X37,390,860 - 37,395,621 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011251026   ⟹   XP_011249328
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X36,572,513 - 36,577,099 (+)NCBI
GRCm38X37,390,860 - 37,395,446 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003689019 (Get FASTA)   NCBI Sequence Viewer  
  XP_006541628 (Get FASTA)   NCBI Sequence Viewer  
  XP_011249328 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000110848.4
  ENSMUSP00000136542
  ENSMUSP00000136542.2
Reference Protein Sequences
RefSeq Acc Id: XP_003689019   ⟸   XM_003688971
- Peptide Label: isoform X1
- UniProtKB: Q9D3I8 (UniProtKB/TrEMBL),   B7ZWB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006541628   ⟸   XM_006541565
- Peptide Label: isoform X2
- UniProtKB: B7ZWB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011249328   ⟸   XM_011251026
- Peptide Label: isoform X3
- UniProtKB: B7ZWB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000136542   ⟸   ENSMUST00000179915
Protein Domains
Homeobox

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D3I8-F1-model_v2 AlphaFold Q9D3I8 1-205 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:5434453 AgrOrtholog
Ensembl Genes ENSMUSG00000079639 UniProtKB/TrEMBL
  ENSMUSG00000094945 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000115194.5 UniProtKB/TrEMBL
  ENSMUST00000179915 ENTREZGENE
  ENSMUST00000179915.4 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeodomain UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
KEGG Report mmu:100861640 UniProtKB/TrEMBL
  mmu:664609 UniProtKB/TrEMBL
MGD MGI:5434453 ENTREZGENE
NCBI Gene Gm21098 ENTREZGENE
PANTHER HOMEOBOX PROTEIN EHOX-RELATED UniProtKB/TrEMBL
  MCG113260-RELATED-RELATED UniProtKB/TrEMBL
Pfam Homeobox UniProtKB/TrEMBL
PhenoGen Rhox4a2 PhenoGen
PROSITE HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
UniProt B7ZWB1 ENTREZGENE, UniProtKB/TrEMBL
  Q9D3I8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-10-21 Rhox4a2  reproductive homeobox 4A2  Gm21098  predicted gene, 21098  Symbol and/or name change 5135510 APPROVED