Gm21117 (predicted gene, 21117) - Rat Genome Database

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Pathways
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Gene: Gm21117 (predicted gene, 21117) Mus musculus
Analyze
No known orthologs.
Symbol: Gm21117
Name: predicted gene, 21117
RGD ID: 7178768
MGI Page MGI
Description: Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: X-linked lymphocyte-regulated protein PM1; X-linked lymphocyte-regulated protein PM1-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39Y51,123,225 - 51,147,865 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblY51,121,799 - 51,148,063 (+)EnsemblGRCm39 Ensembl
GRCm38Y51,126,646 - 51,151,286 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblY51,125,220 - 51,151,484 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapYC1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:53
Count of miRNA genes:52
Interacting mature miRNAs:53
Transcripts:ENSMUST00000180133
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017318800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC144551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000180133   ⟹   ENSMUSP00000136710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblY51,123,234 - 51,145,298 (+)Ensembl
GRCm38.p6 EnsemblY51,126,655 - 51,148,719 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185327   ⟹   ENSMUSP00000139807
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblY51,121,799 - 51,148,063 (+)Ensembl
GRCm38.p6 EnsemblY51,125,220 - 51,151,484 (+)Ensembl
RefSeq Acc Id: XM_017318800   ⟹   XP_017174289
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39Y51,123,225 - 51,147,865 (+)NCBI
GRCm38Y51,126,646 - 51,151,286 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_017174289 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000139807
  ENSMUSP00000139807.2
Reference Protein Sequences
RefSeq Acc Id: XP_017174289   ⟸   XM_017318800
- UniProtKB: A0A9L6KE01 (UniProtKB/TrEMBL),   A0A9L6KE25 (UniProtKB/TrEMBL),   A0A9L6KEG3 (UniProtKB/TrEMBL),   A0A9L6KEH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000139807   ⟸   ENSMUST00000185327
RefSeq Acc Id: ENSMUSP00000136710   ⟸   ENSMUST00000180133
Protein Domains
XLR/SYCP3/FAM9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A087WPJ9-F1-model_v2 AlphaFold A0A087WPJ9 1-222 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000096769 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000185327 ENTREZGENE
  ENSMUST00000185327.7 UniProtKB/TrEMBL
InterPro Cor1/Xlr/Xmr UniProtKB/TrEMBL
MGD MGI:5434472 ENTREZGENE
NCBI Gene Gm21117 ENTREZGENE
PANTHER EG546282 PROTEIN-RELATED UniProtKB/TrEMBL
  XLR/SCP3/FAM9 UniProtKB/TrEMBL
Pfam Cor1 UniProtKB/TrEMBL
PhenoGen Gm21117 PhenoGen
UniProt A0A087WPJ9_MOUSE UniProtKB/TrEMBL
  A0A9L6KE01 ENTREZGENE
  A0A9L6KE25 ENTREZGENE
  A0A9L6KEG3 ENTREZGENE
  A0A9L6KEH4 ENTREZGENE