Gm20753 (predicted gene, 20753) - Rat Genome Database

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Gene: Gm20753 (predicted gene, 20753) Mus musculus
Analyze
Symbol: Gm20753
Name: predicted gene, 20753
RGD ID: 7177688
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391106,080,355 - 106,099,254 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1106,080,355 - 106,099,254 (-)EnsemblGRCm39 Ensembl
GRCm381106,152,625 - 106,171,524 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1106,152,625 - 106,171,524 (-)EnsemblGRCm38mm10GRCm38
Celera1109,001,569 - 109,020,464 (-)NCBICelera
Cytogenetic Map1E2.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12477932   PMID:24316575  


Genomics

Variants

.
Variants in Gm20753
592 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179858683113858791Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179858683113858791Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182832635116832635Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182832635116832635Mouse
11667074Led2_mlate embryonic death 2 (mouse)185696027117195081Mouse
12790991Aath1_maortic arch atherosclerosis 1 (mouse)186483929120483929Mouse
4141329Mleu1_mmyeloid leukemia survival 1 (mouse)Not determined89786512123786512Mouse
15039333Nmrs1_mNAFLD-associated magnetic resonance shift 1 (mouse)189786512123786512Mouse
1357760Synch3_msynechia 3 (mouse)Not determined192901442126901550Mouse
4141627Bwq7_mbody weight, QTL 7 (mouse)Not determined192940909124497796Mouse
12879491Hfnq1_mhair follicle number QTL 1 (mouse)193310310123636759Mouse
10045976Tir6_mtrypanosome infection response 6 (mouse)Not determined193536855120529678Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
1301123Cd8mts2_mCD8 memory T cell subset 2 (mouse)Not determined196618386130618557Mouse
1301753Tir3a_mtrypansomiasis infection response 3a (mouse)Not determined197053986131054190Mouse
13452398Leusq5_mleucocytosis susceptibility QTL 5 (mouse)198474785126386517Mouse
1301536Pbbcp1_mperipheral blood B cell percentage 1 (mouse)Not determined199507660133507845Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
12879492Ecgnq1_meccrine gland number QTL 1 (mouse)1103278062120535225Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse

Markers in Region
MHAa97b3.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381106,160,358 - 106,160,534UniSTSGRCm38
MGSCv371108,056,935 - 108,057,111UniSTSGRCm37
Celera1109,009,303 - 109,009,479UniSTS
Cytogenetic Map1E2.1UniSTS
Whitehead_YAC1 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000190105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1106,080,355 - 106,099,254 (-)Ensembl
GRCm38.p6 Ensembl1106,152,625 - 106,171,524 (-)Ensembl
RefSeq Acc Id: NR_040630
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391106,080,355 - 106,099,254 (-)NCBI
GRCm381106,152,625 - 106,171,524 (-)NCBI
Celera1109,001,569 - 109,020,464 (-)NCBI
Sequence:
Promoters
RGD ID:6874642
Promoter ID:EPDNEW_M772
Type:multiple initiation site
Name:Gm20753_1
Description:Mus musculus predicted gene, 20753 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381106,171,435 - 106,171,495EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000101583 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000190105 ENTREZGENE
MGD MGI:5434109 ENTREZGENE
NCBI Gene Gm20753 ENTREZGENE
PhenoGen Gm20753 PhenoGen
RNAcentral URS0000759973 RNACentral