RHBDF1P1 (RHBDF1 pseudogene 1) - Rat Genome Database

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Gene: RHBDF1P1 (RHBDF1 pseudogene 1) Homo sapiens
Analyze
Symbol: RHBDF1P1
Name: RHBDF1 pseudogene 1
RGD ID: 7174873
HGNC Page HGNC:44499
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: RHBDF1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38314,572,654 - 14,574,792 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl314,572,852 - 14,574,792 (-)EnsemblGRCh38hg38GRCh38
GRCh37314,614,161 - 14,616,299 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36314,589,297 - 14,592,365 (-)NCBINCBI36Build 36hg18NCBI36
Celera314,552,577 - 14,554,517 (-)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef314,550,260 - 14,552,200 (-)NCBIHuRef
CHM1_1314,565,398 - 14,567,338 (-)NCBICHM1_1
T2T-CHM13v2.0314,575,049 - 14,577,187 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:266
Count of miRNA genes:254
Interacting mature miRNAs:266
Transcripts:ENST00000427504
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-57831  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3716108,155 - 108,410UniSTSGRCh37
Build 361648,155 - 48,410RGDNCBI36
Celera16310,051 - 310,306RGD
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map16p13.3UniSTS
HuRef1626,548 - 26,803UniSTS
HuRef314,550,075 - 14,550,328UniSTS
TNG Radiation Hybrid Map1685.0UniSTS
REN94523  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3716109,026 - 109,286UniSTSGRCh37
GRCh37314,614,830 - 14,614,969UniSTSGRCh37
Build 36314,589,834 - 14,589,973RGDNCBI36
Celera314,553,048 - 14,553,187RGD
Celera16310,923 - 311,183UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map16p13.3UniSTS
HuRef314,550,731 - 14,550,870UniSTS
HuRef1627,420 - 27,680UniSTS
RH17768  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3716109,276 - 109,772UniSTSGRCh37
GRCh37314,614,959 - 14,615,149UniSTSGRCh37
Build 36314,589,963 - 14,590,153RGDNCBI36
Celera16311,173 - 311,669UniSTS
Celera314,553,177 - 14,553,367RGD
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map16p13.3UniSTS
HuRef1627,670 - 28,166UniSTS
HuRef314,550,860 - 14,551,050UniSTS
GeneMap99-GB4 RH Map356.17UniSTS
NCBI RH Map3179.9UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 11
Low 10 3 3 3 3 4 5 5 357 4
Below cutoff 1018 1128 617 121 250 67 1857 684 1510 141 433 561 57 449 1272

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000427504
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl314,572,852 - 14,574,792 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RHBDF1P1 COSMIC
Ensembl Genes ENSG00000234123 Ensembl, ENTREZGENE
GTEx ENSG00000234123 GTEx
HGNC ID HGNC:44499 ENTREZGENE
Human Proteome Map RHBDF1P1 Human Proteome Map
NCBI Gene RHBDF1P1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-12-23 RHBDF1P1  RHBDF1 pseudogene 1    rhomboid 5 homolog 1 (Drosophila) pseudogene 1  Symbol and/or name change 5135510 APPROVED