Epb41l3 (erythrocyte membrane protein band 4.1-like 3) - Rat Genome Database

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Gene: Epb41l3 (erythrocyte membrane protein band 4.1-like 3) Rattus norvegicus
Analyze
Symbol: Epb41l3
Name: erythrocyte membrane protein band 4.1-like 3
RGD ID: 71089
Description: Predicted to enable actin binding activity and structural molecule activity. Predicted to be involved in several processes, including nervous system development; paranodal junction maintenance; and protein localization to axon. Located in paranode region of axon. Human ortholog(s) of this gene implicated in esophagus squamous cell carcinoma. Orthologous to human EPB41L3 (erythrocyte membrane protein band 4.1 like 3); INTERACTS WITH 17alpha-ethynylestradiol; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: band 4.1-like protein 3; Epb4.1l3; erythrocyte protein band 4.1-like 3; Kiaa0987
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29109,056,178 - 109,260,607 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9109,016,113 - 109,260,607 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9117,524,205 - 117,648,284 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.09122,650,761 - 122,774,785 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.09120,990,093 - 121,114,164 (+)NCBIRnor_WKY
Rnor_6.09117,314,935 - 117,666,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9117,538,009 - 117,666,410 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09117,003,963 - 117,131,768 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49108,303,607 - 108,426,942 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19108,513,086 - 108,636,419 (+)NCBI
Celera9106,289,182 - 106,412,975 (+)NCBICelera
Cytogenetic Map9q38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
3,3',5-triiodo-L-thyronine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3,7-dihydropurine-6-thione  (EXP)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
asbestos  (ISO)
azoxystrobin  (EXP)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
Cuprizon  (EXP,ISO)
decabromodiphenyl ether  (EXP)
dibutyl phthalate  (EXP)
dichromium trioxide  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
etoposide  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
hydroquinone  (ISO)
imidacloprid  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
mercaptopurine  (EXP)
mercury dibromide  (ISO)
mercury dichloride  (EXP)
methotrexate  (ISO)
methoxyacetic acid  (ISO)
methylmercury chloride  (ISO)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (EXP)
nevirapine  (EXP)
nickel atom  (ISO)
panobinostat  (ISO)
paraquat  (EXP)
perfluorononanoic acid  (ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
purine-6-thiol  (EXP)
resveratrol  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thiabendazole  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zaragozic acid A  (EXP,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Loss of DAL-1, a protein 4.1-related tumor suppressor, is an important early event in the pathogenesis of meningiomas. Gutmann DH, etal., Hum Mol Genet 2000 Jun 12;9(10):1495-500.
4. Identification of a DNA methylome profile of esophageal squamous cell carcinoma and potential plasma epigenetic biomarkers for early diagnosis. Li X, etal., PLoS One. 2014 Jul 22;9(7):e103162. doi: 10.1371/journal.pone.0103162. eCollection 2014.
5. Gene Data Set MGD Curation, June 12, 2002
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. Type II brain 4.1 (4.1B/KIAA0987), a member of the protein 4.1 family, is localized to neuronal paranodes. Ohara R, etal., Brain Res Mol Brain Res. 2000 Dec 28;85(1-2):41-52.
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. A novel member of the NF2/ERM/4.1 superfamily with growth suppressing properties in lung cancer. Tran YK, etal., Cancer Res 1999 Jan 1;59(1):35-43.
11. Comparison of mRNA and protein levels of four members of the protein 4.1 family: the type II brain 4.1/4.1B/KIAA0987 is the most predominant member of the protein 4.1 family in rat brain. Yamakawa H and Ohara O, Gene 2000 May 2;248(1-2):137-45.
12. The 4.1/ezrin/radixin/moesin domain of the DAL-1/Protein 4.1B tumour suppressor interacts with 14-3-3 proteins. Yu T, etal., Biochem J 2002 Aug 1;365(Pt 3):783-9.
Additional References at PubMed
PMID:12234973   PMID:12975355   PMID:16551741   PMID:17114649   PMID:17264155   PMID:17428255   PMID:21966409   PMID:22871113  


Genomics

Comparative Map Data
Epb41l3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29109,056,178 - 109,260,607 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9109,016,113 - 109,260,607 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9117,524,205 - 117,648,284 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.09122,650,761 - 122,774,785 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.09120,990,093 - 121,114,164 (+)NCBIRnor_WKY
Rnor_6.09117,314,935 - 117,666,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9117,538,009 - 117,666,410 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09117,003,963 - 117,131,768 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49108,303,607 - 108,426,942 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19108,513,086 - 108,636,419 (+)NCBI
Celera9106,289,182 - 106,412,975 (+)NCBICelera
Cytogenetic Map9q38NCBI
EPB41L3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38185,392,386 - 5,630,663 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl185,392,381 - 5,630,700 (-)EnsemblGRCh38hg38GRCh38
GRCh37185,392,385 - 5,630,662 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36185,382,388 - 5,533,986 (-)NCBINCBI36Build 36hg18NCBI36
Build 34185,382,387 - 5,533,986NCBI
Celera185,277,004 - 5,429,470 (-)NCBICelera
Cytogenetic Map18p11.31NCBI
HuRef185,357,469 - 5,592,720 (-)NCBIHuRef
CHM1_1185,391,745 - 5,628,359 (-)NCBICHM1_1
T2T-CHM13v2.0185,552,548 - 5,790,830 (-)NCBIT2T-CHM13v2.0
Epb41l3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391769,382,642 - 69,596,986 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1769,382,678 - 69,596,984 (+)EnsemblGRCm39 Ensembl
GRCm381769,075,647 - 69,289,991 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1769,075,683 - 69,289,989 (+)EnsemblGRCm38mm10GRCm38
MGSCv371769,506,150 - 69,639,329 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361769,061,712 - 69,194,891 (+)NCBIMGSCv36mm8
Celera1773,449,898 - 73,580,871 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1740.15NCBI
Epb41l3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554025,590,724 - 5,675,340 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554025,459,586 - 5,674,745 (+)NCBIChiLan1.0ChiLan1.0
EPB41L3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11810,973,596 - 11,210,416 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1810,993,680 - 11,210,416 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0188,656,684 - 8,894,170 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
EPB41L3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1771,734,325 - 72,001,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl771,747,333 - 71,868,751 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha771,231,344 - 71,457,355 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0771,832,998 - 72,059,546 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl771,833,001 - 72,059,542 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1771,537,241 - 71,763,720 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0771,563,708 - 71,790,544 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0771,856,265 - 72,082,556 (-)NCBIUU_Cfam_GSD_1.0
Epb41l3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494468,106,837 - 68,282,320 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936779962,696 - 1,106,452 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPB41L3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6101,420,396 - 101,671,169 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16101,420,376 - 101,671,177 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2694,746,460 - 94,885,635 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EPB41L3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11864,489,194 - 64,704,733 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1864,489,042 - 64,585,973 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605039,367,919 - 39,615,416 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epb41l3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477015,094,969 - 15,287,128 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477015,092,706 - 15,303,990 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
D9Got223  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29109,167,104 - 109,167,214 (+)MAPPERmRatBN7.2
Rnor_6.09117,568,727 - 117,568,836NCBIRnor6.0
Rnor_5.09117,034,612 - 117,034,721UniSTSRnor5.0
RGSC_v3.49108,333,988 - 108,334,097UniSTSRGSC3.4
Celera9106,319,542 - 106,319,651UniSTS
Cytogenetic Map9q38UniSTS
D9Got224  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29109,144,124 - 109,144,316 (+)MAPPERmRatBN7.2
Rnor_6.09117,545,750 - 117,545,939NCBIRnor6.0
Rnor_5.09117,011,635 - 117,011,824UniSTSRnor5.0
RGSC_v3.49108,311,011 - 108,311,200UniSTSRGSC3.4
Celera9106,296,586 - 106,296,775UniSTS
Cytogenetic Map9q38UniSTS
D9Got219  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29109,167,022 - 109,167,211 (+)MAPPERmRatBN7.2
Rnor_6.09117,568,645 - 117,568,833NCBIRnor6.0
Rnor_5.09117,034,530 - 117,034,718UniSTSRnor5.0
RGSC_v3.49108,333,906 - 108,334,094UniSTSRGSC3.4
Celera9106,319,460 - 106,319,648UniSTS
Cytogenetic Map9q38UniSTS
RH131146  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29109,260,153 - 109,260,334 (+)MAPPERmRatBN7.2
Rnor_6.09117,665,955 - 117,666,135NCBIRnor6.0
Rnor_5.09117,131,315 - 117,131,495UniSTSRnor5.0
RGSC_v3.49108,426,489 - 108,426,669UniSTSRGSC3.4
Celera9106,412,522 - 106,412,702UniSTS
Cytogenetic Map9q38UniSTS
AU048765  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29109,140,746 - 109,140,858 (+)MAPPERmRatBN7.2
Rnor_6.09117,542,372 - 117,542,483NCBIRnor6.0
Rnor_5.09117,008,257 - 117,008,368UniSTSRnor5.0
RGSC_v3.49108,307,633 - 108,307,744UniSTSRGSC3.4
Celera9106,293,208 - 106,293,319UniSTS
Cytogenetic Map9q38UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:508
Count of miRNA genes:247
Interacting mature miRNAs:290
Transcripts:ENSRNOT00000022849, ENSRNOT00000022878, ENSRNOT00000049426
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 24 6 6 7 6 74 33 36
Low 18 47 31 12 31 7 8 2 5 11 7
Below cutoff 1 4 4 4 1 3 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001395722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB032827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB032828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ462202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000022849   ⟹   ENSRNOP00000022849
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9109,136,721 - 109,260,604 (+)Ensembl
Rnor_6.0 Ensembl9117,538,346 - 117,666,405 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000022878   ⟹   ENSRNOP00000022878
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9109,016,113 - 109,259,705 (+)Ensembl
Rnor_6.0 Ensembl9117,538,009 - 117,665,508 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000049426   ⟹   ENSRNOP00000040775
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9109,136,721 - 109,260,604 (+)Ensembl
Rnor_6.0 Ensembl9117,583,620 - 117,664,121 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088647   ⟹   ENSRNOP00000071945
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9109,103,355 - 109,260,604 (+)Ensembl
Rnor_6.0 Ensembl9117,583,610 - 117,666,410 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095272   ⟹   ENSRNOP00000081340
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9109,136,721 - 109,260,604 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096457   ⟹   ENSRNOP00000077362
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9109,136,721 - 109,260,604 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097689   ⟹   ENSRNOP00000091897
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9109,136,721 - 109,260,604 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109783   ⟹   ENSRNOP00000083187
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9109,136,689 - 109,260,607 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112712   ⟹   ENSRNOP00000089822
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9109,016,113 - 109,259,705 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117937   ⟹   ENSRNOP00000083215
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9109,136,714 - 109,260,602 (+)Ensembl
RefSeq Acc Id: NM_053927   ⟹   NP_446379
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,136,721 - 109,260,607 (+)NCBI
Rnor_6.09117,538,346 - 117,666,408 (+)NCBI
Rnor_5.09117,003,963 - 117,131,768 (+)NCBI
RGSC_v3.49108,303,607 - 108,426,942 (+)RGD
Celera9106,289,182 - 106,412,975 (+)RGD
Sequence:
RefSeq Acc Id: XM_017596232   ⟹   XP_017451721
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,102,619 - 109,260,607 (+)NCBI
Rnor_6.09117,583,609 - 117,666,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596239   ⟹   XP_017451728
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,381 - 109,260,607 (+)NCBI
Rnor_6.09117,583,609 - 117,666,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596240   ⟹   XP_017451729
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,381 - 109,260,607 (+)NCBI
Rnor_6.09117,583,609 - 117,666,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596242   ⟹   XP_017451731
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,382 - 109,260,607 (+)NCBI
Rnor_6.09117,583,609 - 117,666,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596244   ⟹   XP_017451733
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,384 - 109,260,607 (+)NCBI
Rnor_6.09117,583,609 - 117,666,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596245   ⟹   XP_017451734
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,384 - 109,260,607 (+)NCBI
Rnor_6.09117,583,609 - 117,666,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596246   ⟹   XP_017451735
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,383 - 109,260,607 (+)NCBI
Rnor_6.09117,583,609 - 117,666,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596247   ⟹   XP_017451736
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,384 - 109,260,607 (+)NCBI
Rnor_6.09117,583,609 - 117,666,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039082912   ⟹   XP_038938840
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,102,619 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082913   ⟹   XP_038938841
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,380 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082914   ⟹   XP_038938842
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,102,619 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082916   ⟹   XP_038938844
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,136,360 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082917   ⟹   XP_038938845
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,137,903 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082918   ⟹   XP_038938846
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,144,239 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082919   ⟹   XP_038938847
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,075,438 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082920   ⟹   XP_038938848
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,102,619 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082921   ⟹   XP_038938849
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,380 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082922   ⟹   XP_038938850
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,102,619 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082923   ⟹   XP_038938851
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,056,178 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082924   ⟹   XP_038938852
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,381 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082926   ⟹   XP_038938854
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,382 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082927   ⟹   XP_038938855
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,382 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082928   ⟹   XP_038938856
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,382 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082929   ⟹   XP_038938857
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,382 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082930   ⟹   XP_038938858
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,382 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082931   ⟹   XP_038938859
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,382 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082932   ⟹   XP_038938860
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,382 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082933   ⟹   XP_038938861
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,382 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082934   ⟹   XP_038938862
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,383 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082935   ⟹   XP_038938863
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,136,373 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082936   ⟹   XP_038938864
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,384 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082937   ⟹   XP_038938865
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,383 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082938   ⟹   XP_038938866
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,384 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082939   ⟹   XP_038938867
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,383 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082941   ⟹   XP_038938869
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,383 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082942   ⟹   XP_038938870
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,384 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082943   ⟹   XP_038938871
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,383 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082944   ⟹   XP_038938872
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,384 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082945   ⟹   XP_038938873
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,103,384 - 109,260,607 (+)NCBI
RefSeq Acc Id: XM_039082946   ⟹   XP_038938874
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,136,376 - 109,260,607 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001382651 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382652 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382653 (Get FASTA)   NCBI Sequence Viewer  
  NP_446379 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451721 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451728 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451729 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451731 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451733 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451734 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451735 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451736 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938840 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938841 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938842 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938844 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938845 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938846 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938847 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938848 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938849 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938850 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938851 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938852 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938854 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938855 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938856 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938857 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938858 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938859 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938860 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938861 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938862 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938863 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938864 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938865 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938866 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938867 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938869 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938870 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938871 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938872 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938873 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938874 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABE77175 (Get FASTA)   NCBI Sequence Viewer  
  BAA90774 (Get FASTA)   NCBI Sequence Viewer  
  BAA90775 (Get FASTA)   NCBI Sequence Viewer  
  EDL90920 (Get FASTA)   NCBI Sequence Viewer  
  EDL90921 (Get FASTA)   NCBI Sequence Viewer  
  EDL90922 (Get FASTA)   NCBI Sequence Viewer  
  EDL90923 (Get FASTA)   NCBI Sequence Viewer  
  EDL90924 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_446379   ⟸   NM_053927
- UniProtKB: Q9JMB3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451721   ⟸   XM_017596232
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017451728   ⟸   XM_017596239
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017451733   ⟸   XM_017596244
- Peptide Label: isoform X23
- UniProtKB: A0A0G2K1Q9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451729   ⟸   XM_017596240
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017451735   ⟸   XM_017596246
- Peptide Label: isoform X28
- UniProtKB: A3E0T0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451736   ⟸   XM_017596247
- Peptide Label: isoform X35
- Sequence:
RefSeq Acc Id: XP_017451731   ⟸   XM_017596242
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_017451734   ⟸   XM_017596245
- Peptide Label: isoform X25
- Sequence:
RefSeq Acc Id: ENSRNOP00000022878   ⟸   ENSRNOT00000022878
RefSeq Acc Id: ENSRNOP00000022849   ⟸   ENSRNOT00000022849
RefSeq Acc Id: ENSRNOP00000040775   ⟸   ENSRNOT00000049426
RefSeq Acc Id: ENSRNOP00000071945   ⟸   ENSRNOT00000088647
RefSeq Acc Id: XP_038938851   ⟸   XM_039082923
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038938847   ⟸   XM_039082919
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038938840   ⟸   XM_039082912
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938850   ⟸   XM_039082922
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038938848   ⟸   XM_039082920
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038938842   ⟸   XM_039082914
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038938849   ⟸   XM_039082921
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038938841   ⟸   XM_039082913
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038938852   ⟸   XM_039082924
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038938855   ⟸   XM_039082927
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038938856   ⟸   XM_039082928
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038938857   ⟸   XM_039082929
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038938859   ⟸   XM_039082931
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038938858   ⟸   XM_039082930
- Peptide Label: isoform X17
- UniProtKB: Q9JMB3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938861   ⟸   XM_039082933
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038938860   ⟸   XM_039082932
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038938854   ⟸   XM_039082926
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038938871   ⟸   XM_039082943
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038938862   ⟸   XM_039082934
- Peptide Label: isoform X22
- UniProtKB: G3V874 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938867   ⟸   XM_039082939
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038938865   ⟸   XM_039082937
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038938869   ⟸   XM_039082941
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038938866   ⟸   XM_039082938
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038938864   ⟸   XM_039082936
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038938870   ⟸   XM_039082942
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038938873   ⟸   XM_039082945
- Peptide Label: isoform X34
RefSeq Acc Id: XP_038938872   ⟸   XM_039082944
- Peptide Label: isoform X33
RefSeq Acc Id: XP_038938844   ⟸   XM_039082916
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038938863   ⟸   XM_039082935
- Peptide Label: isoform X22
- UniProtKB: G3V874 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938874   ⟸   XM_039082946
- Peptide Label: isoform X36
RefSeq Acc Id: XP_038938845   ⟸   XM_039082917
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038938846   ⟸   XM_039082918
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000077362   ⟸   ENSRNOT00000096457
RefSeq Acc Id: ENSRNOP00000083187   ⟸   ENSRNOT00000109783
RefSeq Acc Id: ENSRNOP00000081340   ⟸   ENSRNOT00000095272
RefSeq Acc Id: ENSRNOP00000089822   ⟸   ENSRNOT00000112712
RefSeq Acc Id: ENSRNOP00000091897   ⟸   ENSRNOT00000097689
RefSeq Acc Id: ENSRNOP00000083215   ⟸   ENSRNOT00000117937
Protein Domains
FERM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JMB3-F1-model_v2 AlphaFold Q9JMB3 1-1105 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696908
Promoter ID:EPDNEW_R7433
Type:single initiation site
Name:Epb41l3_1
Description:erythrocyte membrane protein band 4.1-like 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.09117,538,331 - 117,538,391EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
9 117415022 117415023 G A snv F344/DuCrl (2019), FXLE16/Stm (2020), ACI/N (2020), ACI/EurMcwi (2019), SS/JrHsdMcwi (2019), WN/N (2020), M520/NRrrcMcwi (2019), LEXF4/Stm (2020), GK/FarMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), MR/N (2020), LEXF10A/StmMcwi (2020), M520/N (2020), F344/NCrl (2019), F344/N (2020), FHH/EurMcwi (2019), LEW/Crl (2019), BUF/N (2020)
9 117415153 117415154 C A snv WKY/N (2020), WKY/NCrl (2019), WAG/RijCrl (2020), SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), HXB4/IpcvMcwi (2020), HXB31/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB10/IpcvMcwi (2019), BXH3/CubMcwi (2020), BXH2/CubMcwi (2020), BN/SsN (2020), BN/NHsdMcwi (2019), BN/NHsdMcwi (2020), BN-Lx/CubMcwi (2019), SR/JrHsd (MCW), PVG/Seac (2019)
9 117415163 117415164 A T snv LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), PVG/Seac (2019), SR/JrHsd (2020), SR/JrHsd (MCW), WAG/RijCrl (2020)
9 117415174 117415175 G T snv BN/SsN (2020), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), WKY/NCrl (2019), WKY/N (2020)
9 117415247 117415248 G T snv SR/JrHsd (MCW), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SR/JrHsd (2020), WAG/RijCrl (2020), WKY/N (2020), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/NHsdMcwi (2019), BN/SsN (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LL/MavRrrcAek (2020), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019)
9 117415346 117415347 G A snv ACI/EurMcwi (2019), ACI/N (2020), GH/OmrMcwi (MCW), CDS, CDR, F344/Stm (2019), DA/OlaHsd (2019), SS/JrHsdMcwi (MCW), SBN/Ygl (MCW), BUF/N (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), SS/JrHsdMcwi (2019), WN/N (2020), MWF/Hsd (2019), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW)
9 117415347 117415348 G T snv CDR, GK/FarMcwi (2019), CDS
9 117415387 117415388 C G snv WN/N (MCW), F344/NRrrc (MCW), Buf/N (MCW), ACI/N (MCW), M520/N (MCW)
9 117415398 117415399 C A snv WKY/N (2020), HXB31/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), SR/JrHsd (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/NHsdMcwi (2019), BN/SsN (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), WAG/RijCrl (2020), WKY/NCrl (2019)
9 117415449 117415450 C T snv WAG/RijCrl (2020), SR/JrHsd (MCW), LH/MavRrrcAek (2020), SR/JrHsd (2020), LN/MavRrrcAek (2020), PVG/Seac (2019), LL/MavRrrcAek (2020)
9 117415698 117415699 T C snv WN/N (2020), CDS, LEXF4/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), GH/OmrMcwi (MCW)
9 117415734 117415735 G T snv PVG/Seac (2019)
9 117415797 117415798 G A snv MR/N (MCW)
9 117466400 117466401 G C snv ACI/N (MCW), F344/NRrrc (MCW)
9 117466722 117466723 C T snv FHH/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), CDS, CDR, LEXF1A/Stm (2019), ACI/N (2020), WN/N (2020), SS/JrHsdMcwi (2019), MWF/Hsd (2019), MR/N (2020), M520/N (2020), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019)
9 117466825 117466826 T A snv SR/JrHsd (2020), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), SR/JrHsd (MCW), WAG/RijCrl (2020), PVG/Seac (2019)
9 117466870 117466871 C T snv CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), ACI/N (2020), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), SS/JrHsdMcwi (2019), WN/N (2020), LEXF1C/Stm (2019), FHH/EurMcwi (MCW), ACI/EurMcwi (2019), F344/NCrl (2019), GK/FarMcwi (2019), LEXF1A/Stm (2019)
9 117467017 117467018 C T snv SHRSP/A3NCrl (2019), WKY/NCrl (2019), SR/JrHsd (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/NHsdMcwi (2019), BN/SsN (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), WAG/RijCrl (2020), WKY/N (2020)
9 117467077 117467078 T G snv WAG/RijCrl (2020), SR/JrHsd (MCW), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), SR/JrHsd (2020)
9 117467087 117467088 C A snv SR/JrHsd (2020), WAG/RijCrl (2020), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), SR/JrHsd (MCW)
9 117467156 117467157 C T snv FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), DA/OlaHsd (2019), SS/JrHsdMcwi (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), CDS, CDR, WN/N (2020), F344/DuCrl (2019)
9 117636538 117636539 C A snv ACI/EurMcwi (MCW), ACI/N (MCW), ACI/EurMcwi (RGD), ACI/N (2020), ACI/EurMcwi (2019)
9 117636582 117636583 C A snv ACI/EurMcwi (MCW), ACI/N (MCW), ACI/EurMcwi (RGD), ACI/EurMcwi (2019), ACI/N (2020)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:71089 AgrOrtholog
BioCyc Gene G2FUF-26371 BioCyc
Ensembl Genes ENSRNOG00000016724 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000022849 ENTREZGENE
  ENSRNOP00000022849.3 UniProtKB/TrEMBL
  ENSRNOP00000022878 ENTREZGENE
  ENSRNOP00000022878.5 UniProtKB/TrEMBL
  ENSRNOP00000040775 ENTREZGENE
  ENSRNOP00000040775.3 UniProtKB/TrEMBL
  ENSRNOP00000071945 ENTREZGENE
  ENSRNOP00000071945.2 UniProtKB/TrEMBL
  ENSRNOP00000077362.1 UniProtKB/TrEMBL
  ENSRNOP00000081340.1 UniProtKB/TrEMBL
  ENSRNOP00000083187.1 UniProtKB/TrEMBL
  ENSRNOP00000083215 ENTREZGENE
  ENSRNOP00000083215.1 UniProtKB/TrEMBL
  ENSRNOP00000089822 ENTREZGENE
  ENSRNOP00000089822.1 UniProtKB/TrEMBL
  ENSRNOP00000091897.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022849 ENTREZGENE
  ENSRNOT00000022849.6 UniProtKB/TrEMBL
  ENSRNOT00000022878 ENTREZGENE
  ENSRNOT00000022878.9 UniProtKB/TrEMBL
  ENSRNOT00000049426 ENTREZGENE
  ENSRNOT00000049426.4 UniProtKB/TrEMBL
  ENSRNOT00000088647 ENTREZGENE
  ENSRNOT00000088647.2 UniProtKB/TrEMBL
  ENSRNOT00000095272.1 UniProtKB/TrEMBL
  ENSRNOT00000096457.1 UniProtKB/TrEMBL
  ENSRNOT00000097689.1 UniProtKB/TrEMBL
  ENSRNOT00000109783.1 UniProtKB/TrEMBL
  ENSRNOT00000112712 ENTREZGENE
  ENSRNOT00000112712.1 UniProtKB/TrEMBL
  ENSRNOT00000117937 ENTREZGENE
  ENSRNOT00000117937.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro Band4.1-L3 UniProtKB/TrEMBL
  Band_4.1_C UniProtKB/TrEMBL
  Band_41_domain UniProtKB/TrEMBL
  Ez/rad/moesin UniProtKB/TrEMBL
  FERM-adjacent UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_3-hlx UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_CS UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
  SAB UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
KEGG Report rno:116724 UniProtKB/TrEMBL
NCBI Gene 116724 ENTREZGENE
PANTHER PTHR23280:SF20 UniProtKB/TrEMBL
Pfam 4_1_CTD UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  FERM_M UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  PF08736 UniProtKB/TrEMBL
  SAB UniProtKB/TrEMBL
PhenoGen Epb41l3 PhenoGen
PRINTS BAND41 UniProtKB/TrEMBL
  ERMFAMILY UniProtKB/TrEMBL
PROSITE FERM_1 UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_3 UniProtKB/TrEMBL
SMART B41 UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  SM01195 UniProtKB/TrEMBL
Superfamily-SCOP FERM_3-hlx UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A0G2K1Q9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y1G9_RAT UniProtKB/TrEMBL
  A0A8I5ZSB9_RAT UniProtKB/TrEMBL
  A0A8I5ZVK0_RAT UniProtKB/TrEMBL
  A0A8I5ZZJ7_RAT UniProtKB/TrEMBL
  A0A8I6AAL7_RAT UniProtKB/TrEMBL
  A0A8I6AUN0_RAT UniProtKB/TrEMBL
  A3E0T0 ENTREZGENE, UniProtKB/TrEMBL
  F7FPP7_RAT UniProtKB/TrEMBL
  G3V874 ENTREZGENE, UniProtKB/TrEMBL
  Q9JMB3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-07-09 Epb4.1l3  erythrocyte protein band 4.1-like 3      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression enriched in brain, kidney, and testis 70730
gene_product member of the protein 4.1 family 70730