Csnk1d (casein kinase 1, delta) - Rat Genome Database

Name: Csnk1d
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Csnk1d (casein kinase 1, delta) Rattus norvegicus

Analyze

Symbol:

Csnk1d

Name:

casein kinase 1, delta

RGD ID:

71031

Description:

Enables protein serine/threonine kinase activity. Involved in cellular response to nerve growth factor stimulus. Located in centrosome and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in advanced sleep phase syndrome 2. Orthologous to human CSNK1D (casein kinase 1 delta); PARTICIPATES IN Hedgehog signaling pathway; p53 signaling pathway; ribosome biogenesis pathway; INTERACTS WITH 2,4-dinitrotoluene; 2-ethoxyethanol; 2-methoxyethanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

casein kinase 1 delta; casein kinase I; casein kinase I isoform delta; CKI-delta; tau-protein kinase CSNK1D

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CSNK1D (casein kinase 1 delta)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Csnk1d (casein kinase 1, delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Csnk1d (casein kinase 1 delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CSNK1D (casein kinase 1 delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CSNK1D (casein kinase 1 delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Csnk1d (casein kinase 1 delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CSNK1D (casein kinase 1 delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CSNK1D (casein kinase 1 delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Csnk1d (casein kinase 1 delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CSNK1E (casein kinase 1 epsilon)	HGNC	OrthoDB
Homo sapiens (human):	VPS26C (VPS26 endosomal protein sorting factor C)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CSNK1D (casein kinase 1 delta)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Csnk1d (casein kinase 1, delta)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	csnk1da (casein kinase 1, delta a)	Alliance	DIOPT (Ensembl Compara\|OMA\|PhylomeDB)
Danio rerio (zebrafish):	csnk1db (casein kinase 1, delta b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	HRR25	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	dco	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	kin-20	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	csnk1d	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	106,221,992 - 106,256,620 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	106,221,992 - 106,256,614 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	111,329,802 - 111,360,776 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	110,792,841 - 110,823,815 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	106,146,084 - 106,177,075 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	110,147,786 - 110,182,413 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	110,148,600 - 110,182,408 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	109,738,952 - 109,769,940 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	110,166,244 - 110,197,233 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	110,177,115 - 110,211,716 (-)	NCBI
Celera	10	104,764,644 - 104,795,629 (-)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

advanced sleep phase syndrome 1 (ISO)

advanced sleep phase syndrome 2 (ISO)

Alzheimer's disease (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2-ethoxyethanol (EXP)

2-hydroxypropanoic acid (ISO)

2-methoxyethanol (EXP)

3,4-methylenedioxymethamphetamine (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

ammonium chloride (EXP)

anthra[1,9-cd]pyrazol-6(2H)-one (ISO)

antimycin A (ISO)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

chlorpyrifos (ISO)

choline (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

coumarin (ISO)

cycloheximide (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

diarsenic trioxide (ISO)

diazinon (EXP)

dieldrin (EXP)

dioxygen (ISO)

dorsomorphin (ISO)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

hydrogen peroxide (ISO)

ivermectin (ISO)

L-methionine (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-methylformamide (ISO)

N-Vinyl-2-pyrrolidone (EXP)

nickel atom (ISO)

nickel dichloride (EXP,ISO)

paracetamol (ISO)

phenobarbital (EXP)

pyrazoles (ISO)

pyrimidines (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (EXP)

tunicamycin (ISO)

urethane (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vanadyl sulfate (ISO)

vinclozolin (EXP)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to nerve growth factor stimulus (IEP)

circadian regulation of gene expression (ISO,ISS)

endocytosis (IBA)

Golgi organization (ISO)

microtubule nucleation (ISO)

non-motile cilium assembly (IBA,ISO)

positive regulation of canonical Wnt signaling pathway (IBA,ISO)

positive regulation of non-canonical Wnt signaling pathway (ISO)

positive regulation of proteasomal ubiquitin-dependent protein catabolic process (IBA,ISO,ISS)

positive regulation of protein phosphorylation (ISO)

positive regulation of Wnt signaling pathway (ISO)

protein localization to centrosome (ISO)

protein localization to cilium (ISO)

protein localization to Golgi apparatus (ISO)

protein phosphorylation (IDA)

regulation of circadian rhythm (IBA,ISO,ISS)

signal transduction (IBA)

spindle assembly (IBA,ISO)

Wnt signaling pathway (IEA)

Cellular Component

centrosome (IDA,ISO)

ciliary basal body (ISO)

Golgi apparatus (ISO)

nucleus (IBA,ISO,ISS)

perinuclear region of cytoplasm (IDA,ISO)

plasma membrane (ISO)

spindle (ISO)

spindle microtubule (IBA,ISO)

Molecular Function

ATP binding (IEA)

kinase activity (IDA)

protein binding (IPI,ISO)

protein kinase activity (ISO,ISS)

protein serine kinase activity (ISO)

protein serine/threonine kinase activity (IBA,IDA,IEA,ISO)

tau-protein kinase activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Hedgehog signaling pathway (IEA,ISO)

p53 signaling pathway (ISO)

ribosome biogenesis pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Neurite outgrowth of mature retinal ganglion cells and PC12 cells requires activity of CK1delta and CK1epsilon.	Bischof J, etal., PLoS One. 2011;6(6):e20857. doi: 10.1371/journal.pone.0020857. Epub 2011 Jun 16.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	A new molecular link between the fibrillar and granulovacuolar lesions of Alzheimer's disease.	Ghoshal N, etal., Am J Pathol. 1999 Oct;155(4):1163-72.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	Molecular cloning, expression, and characterization of a 49-kilodalton casein kinase I isoform from rat testis.	Graves PR, etal., J Biol Chem 1993 Mar 25;268(9):6394-401.
6.	Phosphorylation by casein kinase I promotes the turnover of the Mdm2 oncoprotein via the SCF(beta-TRCP) ubiquitin ligase.	Inuzuka H, etal., Cancer Cell. 2010 Aug 9;18(2):147-59. doi: 10.1016/j.ccr.2010.06.015.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
9.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
10.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
11.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
12.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
14.	Centrosomal anchoring of the protein kinase CK1delta mediated by attachment to the large, coiled-coil scaffolding protein CG-NAP/AKAP450.	Sillibourne JE, etal., J Mol Biol 2002 Sep 27;322(4):785-97.
15.	Interaction of casein kinase 1 delta (CK1 delta) with the light chain LC2 of microtubule associated protein 1A (MAP1A).	Wolff S, etal., Biochim Biophys Acta. 2005 Sep 10;1745(2):196-206.
16.	Casein kinase 1 delta (CK1delta) interacts with the SNARE associated protein snapin.	Wolff S, etal., FEBS Lett. 2006 Nov 27;580(27):6477-84. Epub 2006 Nov 7.
17.	Casein kinase 1 delta mRNA is upregulated in Alzheimer disease brain.	Yasojima K, etal., Brain Res. 2000 May 19;865(1):116-20.
18.	CK1delta and CK1epsilon are components of human 40S subunit precursors required for cytoplasmic 40S maturation.	Zemp I, etal., J Cell Sci. 2014 Mar 15;127(Pt 6):1242-53. doi: 10.1242/jcs.138719. Epub 2014 Jan 14.

Additional References at PubMed

PMID:7665585	PMID:8648628	PMID:8889548	PMID:10826492	PMID:11165242	PMID:15557340	PMID:16027726	PMID:16618118	PMID:17027228	PMID:17244647	PMID:17562708	PMID:17594292
PMID:19414593	PMID:20412773	PMID:21399614	PMID:21422228	PMID:21564097	PMID:21718540	PMID:21930935	PMID:22549116	PMID:23861943	PMID:24055157	PMID:24648492	PMID:25245819
PMID:25468996	PMID:25500533

Genomics

Comparative Map Data

Csnk1d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	106,221,992 - 106,256,620 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	106,221,992 - 106,256,614 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	111,329,802 - 111,360,776 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	110,792,841 - 110,823,815 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	106,146,084 - 106,177,075 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	110,147,786 - 110,182,413 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	110,148,600 - 110,182,408 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	109,738,952 - 109,769,940 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	110,166,244 - 110,197,233 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	110,177,115 - 110,211,716 (-)	NCBI
Celera	10	104,764,644 - 104,795,629 (-)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

CSNK1D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	82,239,019 - 82,273,750 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	82,239,023 - 82,273,700 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	80,196,895 - 80,231,626 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	77,795,527 - 77,824,862 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	77,795,530 - 77,824,862	NCBI
Celera	17	76,796,458 - 76,825,073 (-)	NCBI		Celera
Cytogenetic Map	17	q25.3	NCBI
HuRef	17	75,600,124 - 75,630,539 (-)	NCBI		HuRef
CHM1_1	17	80,286,271 - 80,316,893 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	83,107,753 - 83,142,487 (-)	NCBI		T2T-CHM13v2.0

Csnk1d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	120,848,535 - 120,882,180 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	120,849,816 - 120,882,156 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	120,957,709 - 120,991,350 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	120,958,990 - 120,991,330 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	120,823,055 - 120,852,647 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	120,777,831 - 120,807,423 (-)	NCBI		MGSCv36	mm8
Celera	11	132,698,912 - 132,728,516 (-)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	84.75	NCBI

Csnk1d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	904,660 - 935,330 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	904,659 - 936,293 (+)	NCBI	ChiLan1.0	ChiLan1.0

CSNK1D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	17	103,680,413 - 103,714,803 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	76,648,677 - 76,683,054 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	82,461,764 - 82,494,348 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	82,462,467 - 82,494,348 (-)	Ensembl	panpan1.1		panPan2

CSNK1D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	83,395 - 110,309 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	73,215 - 110,269 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	678,798 - 713,246 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	670,196 - 704,640 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	670,181 - 704,614 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	695,250 - 729,697 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	825,215 - 859,661 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	900,309 - 934,743 (+)	NCBI		UU_Cfam_GSD_1.0

Csnk1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	662,224 - 691,072 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	5,724,406 - 5,743,180 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936594	5,720,887 - 5,743,206 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CSNK1D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	768,865 - 796,595 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	768,856 - 794,495 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	969,952 - 977,839 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CSNK1D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	74,157,875 - 74,192,142 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	74,160,648 - 74,192,108 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	45,753,881 - 45,787,624 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Csnk1d
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	11,032,021 - 11,058,551 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	11,031,102 - 11,074,100 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Csnk1d
125 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	450
Count of miRNA genes:	245
Interacting mature miRNAs:	313
Transcripts:	ENSRNOT00000015178, ENSRNOT00000054936
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	51770177	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	107211142	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76452683	107211142	Rat
4889492	Pancm2	Pancreatic morphology QTL 2	3.2		pancreatic beta cell morphology trait (VT:0005217)	ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)	10	76748906	107211142	Rat
2303589	Bw87	Body weight QTL 87	2		body mass (VT:0001259)	body weight (CMO:0000012)	10	81285008	107211142	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	82685200	107211142	Rat
631538	Oia5	Oil induced arthritis QTL 5			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87055121	107211142	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87307617	107211142	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	88539139	107211142	Rat
12880395	Cm109	Cardiac mass QTL 109		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	90404397	107211142	Rat
12880396	Am13	Aortic mass QTL 13		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	90404397	107211142	Rat
12880398	Kidm67	Kidney mass QTL 67		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	90404397	107211142	Rat
12880384	Cm107	Cardiac mass QTL 107		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)		90404397	107211142	Rat
12880385	Cm108	Cardiac mass QTL 108		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)		90404397	107211142	Rat
1579915	Bp280	Blood pressure QTL 280		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90404397	107211142	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	90627439	107057807	Rat
724530	Bp149	Blood pressure QTL 149		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90627439	107211142	Rat
1558652	Bw57	Body weight QTL 57	4.2	0.0008	body mass (VT:0001259)	body weight (CMO:0000012)	10	90910316	107211142	Rat
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93223816	107057807	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	94759759	107211142	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	94759759	107211142	Rat
1578663	Bss18	Bone structure and strength QTL 18	3.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	10	96703043	107057807	Rat
1578672	Bmd16	Bone mineral density QTL 16	6.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	96703043	107057807	Rat

Markers in Region

RH142791

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	106,249,241 - 106,249,444 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	110,175,037 - 110,175,239	NCBI	Rnor6.0
Rnor_5.0	10	109,762,569 - 109,762,771	UniSTS	Rnor5.0
RGSC_v3.4	10	110,189,862 - 110,190,064	UniSTS	RGSC3.4
Celera	10	104,788,261 - 104,788,463	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

RH137468

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	106,247,864 - 106,248,052 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	110,173,660 - 110,173,847	NCBI	Rnor6.0
Rnor_5.0	10	109,761,192 - 109,761,379	UniSTS	Rnor5.0
RGSC_v3.4	10	110,188,485 - 110,188,672	UniSTS	RGSC3.4
Celera	10	104,786,884 - 104,787,071	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

UniSTS:532270

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	106,226,247 - 106,227,173 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	110,152,044 - 110,152,969	NCBI	Rnor6.0
Rnor_5.0	10	109,739,576 - 109,740,501	UniSTS	Rnor5.0
Celera	10	104,765,268 - 104,766,193	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	42	57	41	19	41	6	9	74	35	41	11	6
Low		1					2	2					2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001414039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_139060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_594964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB063114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC128909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BM392381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB615084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV112274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY312461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000015178 ⟹ ENSRNOP00000015178

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	106,221,992 - 106,256,593 (-)	Ensembl
Rnor_6.0 Ensembl	10	110,148,600 - 110,182,291 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000054936 ⟹ ENSRNOP00000051819

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	106,225,632 - 106,256,376 (-)	Ensembl
Rnor_6.0 Ensembl	10	110,151,420 - 110,182,408 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099055 ⟹ ENSRNOP00000081510

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	106,231,205 - 106,256,614 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106442 ⟹ ENSRNOP00000092631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	106,225,616 - 106,256,614 (-)	Ensembl

RefSeq Acc Id:

NM_001414039 ⟹ NP_001400968

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	106,225,619 - 106,256,349 (-)	NCBI

RefSeq Acc Id:

NM_139060 ⟹ NP_620691

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	106,225,624 - 106,256,614 (-)	NCBI
Rnor_6.0	10	110,151,420 - 110,182,408 (-)	NCBI
Rnor_5.0	10	109,738,952 - 109,769,940 (-)	NCBI
RGSC_v3.4	10	110,166,244 - 110,197,233 (-)	RGD
Celera	10	104,764,644 - 104,795,629 (-)	RGD

Sequence:

show sequence

ACAGCGCGATGGCGGCGGCTCCTTTAGGCAGCTGAAGGGGGATTTAGGCCCGGAAGATCCGAGT
CCATCCGCGGCGGGGAGAGGGCGAGCGGGGCCGGCAGGGGCCGGAGCAGCGGCGGCGGCGCTCG
GACTGTCCCATCCGCCCCGTATTGAGGCGCTGAGAGCGACGGGGCGACCAGAAAGCGATGGTGA
AAGCGGGGCCGTGAGGGGGGCGGAGTCGGACCGGACCCGCAGTAGCGGCAGCAGCGGCGCCGCC
TCCCGGAGCGCAGACCCAGGAAGCGGCCGGGCGGGCAGTAGCGAGCCGCACCGCTGCCATGGAG
CTGAGGGTCGGGAACAGGTACCGACTGGGCCGCAAGATCGGCAGCGGCTCCTTCGGAGACATCT
ATCTCGGTACGGACATTGCTGCAGGAGAAGAAGTTGCCATCAAGCTTGAATGTGTCAAAACCAA
ACATCCTCAGCTCCACATTGAGAGCAAGATCTACAAAATGATGCAGGGAGGAGTGGGCATCCCT
ACCATCAGATGGTGTGGGGCTGAGGGGGACTACAATGTCATGGTGATGGAGCTACTGGGACCCA
GCCTGGAAGACCTATTCAACTTCTGTTCAAGGAAGTTTAGTCTCAAAACTGTTCTGTTGCTTGC
TGACCAAATGATAAGTCGTATTGAGTACATTCATTCGAAGAATTTTATCCACCGAGACGTGAAA
CCAGATAACTTCCTCATGGGGCTGGGAAAGAAAGGCAACCTGGTCTACATCATTGACTTTGGGC
TGGCCAAGAAGTATCGGGATGCCCGCACCCACCAGCATATCCCCTATCGAGAGAACAAGAACCT
CACAGGGACAGCACGCTATGCCTCCATCAACACACACCTTGGCATTGAACAATCTCGAAGGGAT
GACTTGGAGTCTCTGGGGTACGTGCTGATGTACTTCAACCTGGGCTCTCTCCCCTGGCAGGGGC
TGAAGGCCGCCACCAAGAGGCAGAAGTATGAGAGGATCAGTGAGAAGAAGATGTCCACTCCAAT
TGAAGTGCTGTGCAAGGGCTATCCTTCTGAATTTGCCACATACCTGAATTTCTGCCGTTCCTTA
CGTTTTGATGACAAACCTGACTACTCCTACCTGAGACAGCTCTTCAGAAATCTGTTCCATCGCC
AGGGCTTCTCCTACGACTATGTGTTCGACTGGAACATGCTCAAATTTGGTGCCAGCCGGGCTGC
AGATGATGCTGAGCGGGAACGCCGGGACCGAGAAGAACGATTAAGACACTCCCGGAATCCAGCC
ACTCGTGGCCTCCCTTCTACAGCTTCCGGCCGTCTGCGGGGAACCCAGGAAGTGGCTCCCCCAA
CGCCCCTTACCCCTACCTCACATACGGCCAACACCTCTCCTAGACCCGTCTCTGGCATGGAACG
AGAACGGAAAGTGAGTATGCGGCTGCACCGTGGGGCCCCAGTCAACGTCTCCTCATCTGATCTC
ACGGGCCGACAAGATACCTCTCGCATGTCCACCTCACAGATTCCCGGTCGGGTGGCTTCCAGTG
GTCTTCAGTCTGTCGTGCACCGATGAGAACTCTCCTTTTTGCTGTGAAGGGCAGACAATGCATG
GCTGATCTACTCTGTTACCAATGGCTTTACTAGTGACACGCCCCCCGGTCTAAACCCGAAATGT
TAACGCCGGGAGCTCTCCAGGCCACTCACCCAGCGATGCACATGGGGAATCAAAACACAAACTA
AATGGACAGGCTCCAAGAGCTGCCATCGCCAGGGGCTGCCACCATGGCCCCATGTGAGCTCAGT
TGTCATGGGGCTGGGACGAAGAGCAGAGGCTGGGAAACCATTGCAGAGAGAACCCGACTCCCTG
TGAAGAGCCTCTCAGCTCCCACCAGTGGTGGCGGACCTGCGCTCCCTGATGATCCCACCGCAGC
TACCAGTCTTCTACTTGGTTAAGACAGTTTTGTATCATTTTGCTAAAAATTACTGGCTTAAATC
TGTGTAAAGAAATCTGTCTTTTTATTGTTTCTTTCTTGTCTGTTTTTGCGGTCTTAAACAAAAA
AGATGTTGACCTTAAAGAATCCTAAGACACGCTGGCTTGGAGCTTCTGTGTAAAATGGAGGCAG
GCAAGAGAGGGGCACATGTGAGTGTCGAGGATGTGTGTTTTGTTTTGTTTTCTTGTGTTGTGCT
GTTCACTTTGGAAAGGAAATTCTCATCAGTTGTGTATGTGTGTGTGTGTCTTGTGGGCTCCCAT
CAGCCTAATTTGGGCATCTTGCTTACTCTTTCCCACTGTAAACGGATATGCCTGCAGCCATCAG
AGCAGGTAGGGTACAACATCATGGAGTAGTAGGGTTCAGCAGTTCTAGCCTCAGCTGAGCACCA
TGGCATGGCATTCTTCCCAAAGGAGGCAAGAAGGAAGCCAAGACTGAAGAACCCACGTGCAGAG
ACCTTGAGAGCCATATAGGCTGCTGGAGAATTCCAAGATTCAAAGCTGAGCTTGTGTTTGTGGT
TTCTAGGGAGAGGATTGATTTTTGGGTAGGATTGGTTGCCTCTATGCCTTTGCACTTGGGAAGT
TGTGGAACTGACTGCATAGTCCCATGCAGATGCCACTTGGGTTTGTCATTGCCTCTCAGAGCCA
GGGAGCAGGCTGTCCTAGACACCATGGTTTGCCCAGAGGGACCAGTGGCCAAAGGGAATCCACC
CTGAAGTGCCAAGAAGCAGGTGACTGCCTACCTGACTCTAGAACCTTCACCTCCAGAAAGGTGT
GGTGCCACACGCCTCATGATCTTCAGCTGGACACATCTGCGGGCTGGGCTGCTCTGCCGCTGGC
GGTTAGGATGCCAACATGCTCTTCCCTACCATGTGCACCGGATATGAAGAGACAGCAGGACCTG
AGCTCCCCATCTGAGAAATGGGGTGCAGTACATGGGTGTGGGTCCATCTCTTTATTTTTCCTGT
CAGCCTGTGGAGAGAGTTATGCTGGGTACCTTGTTCCCTGTGGAGGTTTGGGCTCTAATGGTGC
CACCATGGCTTCTCCCTTCTTCCCAGAGTTCCTTGGCTCTGAGCACTGGCCCAAGGTTGGGGGA
CACACTGCTGATGTGTGATAGCATCCCAGAATGTGGCTGTTAATTGTGCCTGCCAGCCACGTGA
GCCTGTGGGTGCTTTCTGAATCCTGAGCTGGTTACTCTGCAAGCATTTTAGGGTGGAGAGACTT
GACTCGGTGGGATTGTGTGTCGAGGAGTGCAGAGGGAGGTTGGGGGGGTTGGGCGAGTTTGAGA
TCTTTGTTGCAAATTCTTTATCAGAGTTGGCCCTTCCCTCTCCAGTGGCAGGCCTGCCTGGCAA
GTGTTCTTGTAGATACCTGTGGTGCTGGAGGGGTACAGGGTGGTCTTGAGACTAATCCAGGTTC
AGCCTGGCTTTGTTGGGTTGTGCTCAGATTAGGCCCATTGGAAGTCTCCAGGGTGTGGCCCTGA
CAGTTCTTGCCCAATATTTAATCCCACCATCCCTCGCAGGAAGCGTAGTTAGAATGTGTGTATC
AACCTGTGTCTTGGTGAGCAGTCTCTGAGCTGTGCGTTTGTACTACCACTGTGTTTGTGTACTT
TAACAATTGTGTAAATAATAAATTCATAATGACTTCTACCTTTCAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039086796 ⟹ XP_038942724

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	106,221,992 - 106,256,620 (-)	NCBI

RefSeq Acc Id:

XM_039086797 ⟹ XP_038942725

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	106,221,992 - 106,249,218 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001400968	(Get FASTA)	NCBI Sequence Viewer
	NP_620691	(Get FASTA)	NCBI Sequence Viewer
	XP_038942724	(Get FASTA)	NCBI Sequence Viewer
	XP_038942725	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAB60852	(Get FASTA)	NCBI Sequence Viewer
	EDM06917	(Get FASTA)	NCBI Sequence Viewer
	EDM06918	(Get FASTA)	NCBI Sequence Viewer
	EDM06919	(Get FASTA)	NCBI Sequence Viewer
	EDM06920	(Get FASTA)	NCBI Sequence Viewer
	EDM06921	(Get FASTA)	NCBI Sequence Viewer
	EDM06922	(Get FASTA)	NCBI Sequence Viewer
	EDM06923	(Get FASTA)	NCBI Sequence Viewer
	EDM06924	(Get FASTA)	NCBI Sequence Viewer
	Q06486	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_620691 ⟸ NM_139060
- Peptide Label:	isoform 1
- UniProtKB:	Q06486 (UniProtKB/Swiss-Prot), A6HLL8 (UniProtKB/TrEMBL), A0A8I5ZSZ2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVG IPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRD VKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSR RDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCR SLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKFGASRAADDAERERRDREERLRHSRN PATRGLPSTASGRLRGTQEVAPPTPLTPTSHTANTSPRPVSGMERERKVSMRLHRGAPVNVSSS DLTGRQDTSRMSTSQIPGRVASSGLQSVVHR hide sequence

RefSeq Acc Id:

ENSRNOP00000051819 ⟸ ENSRNOT00000054936

RefSeq Acc Id:

ENSRNOP00000015178 ⟸ ENSRNOT00000015178

RefSeq Acc Id:	XP_038942724 ⟸ XM_039086796
- Peptide Label:	isoform X1
- UniProtKB:	A6HLL2 (UniProtKB/TrEMBL), A0A8I6AHE0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942725 ⟸ XM_039086797
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AHE0 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000081510 ⟸ ENSRNOT00000099055

RefSeq Acc Id:

ENSRNOP00000092631 ⟸ ENSRNOT00000106442

RefSeq Acc Id:	NP_001400968 ⟸ NM_001414039
- Peptide Label:	isoform 2
- UniProtKB:	A0A8L2UMH1 (UniProtKB/TrEMBL), A6HLL9 (UniProtKB/TrEMBL), A0A8I6AHE0 (UniProtKB/TrEMBL)

Protein Domains

Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q06486-F1-model_v2	AlphaFold	Q06486	1-415	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:71031	AgrOrtholog
BioCyc Gene	G2FUF-22376	BioCyc
Ensembl Genes	ENSRNOG00000036676	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000015178	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000051819	ENTREZGENE
	ENSRNOP00000051819.4	UniProtKB/TrEMBL
	ENSRNOP00000081510.1	UniProtKB/TrEMBL
	ENSRNOP00000092631	ENTREZGENE
	ENSRNOP00000092631.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015178	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000054936	ENTREZGENE
	ENSRNOT00000054936.4	UniProtKB/TrEMBL
	ENSRNOT00000099055.1	UniProtKB/TrEMBL
	ENSRNOT00000106442	ENTREZGENE
	ENSRNOT00000106442.1	UniProtKB/TrEMBL
Gene3D-CATH	Transferase(Phosphotransferase) domain 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Kinase-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Prot_kinase_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:64462	UniProtKB/Swiss-Prot
NCBI Gene	64462	ENTREZGENE
PANTHER	CASEIN KINASE I ISOFORM DELTA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CASEIN KINASE-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Pkinase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Csnk1d	PhenoGen
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	S_TKc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF56112	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZSZ2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AHE0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UMH1	ENTREZGENE, UniProtKB/TrEMBL
	A6HLL2	ENTREZGENE, UniProtKB/TrEMBL
	A6HLL4_RAT	UniProtKB/TrEMBL
	A6HLL5_RAT	UniProtKB/TrEMBL
	A6HLL6_RAT	UniProtKB/TrEMBL
	A6HLL7_RAT	UniProtKB/TrEMBL
	A6HLL8	ENTREZGENE, UniProtKB/TrEMBL
	A6HLL9	ENTREZGENE, UniProtKB/TrEMBL
	KC1D_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q99KK4	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-07-09	Csnk1d	casein kinase 1, delta			Symbol and Name updated to reflect Human and Mouse nomenclature	70877	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to the centrosome of interphase cells and to the mitotic spindle	727437

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)