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Gene: Col5a3 (collagen type V alpha 3 chain) Rattus norvegicus
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Symbol: Col5a3
Name: collagen type V alpha 3 chain
Description: Exhibits proteoglycan binding activity. Predicted to be involved in cell-matrix adhesion and collagen fibril organization. Localizes to the collagen-containing extracellular matrix. Orthologous to human COL5A3 (collagen type V alpha 3 chain); PARTICIPATES IN cell-extracellular matrix signaling pathway; Entamoebiasis pathway; INTERACTS WITH 6-propyl-2-thiouracil; 7,12-dimethyltetraphene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: collagen alpha-3(V) chain; collagen, type V, alpha 3; collagen, type V, alpha 4; procollagen type V alpha 3; procollagen, type V, alpha 3
Orthologs:
Homo sapiens (human) : COL5A3 (collagen type V alpha 3 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col5a3 (collagen, type V, alpha 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col5a3 (collagen type V alpha 3 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL5A3 (collagen type V alpha 3 chain)
Canis lupus familiaris (dog) : COL5A3 (collagen type V alpha 3 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col5a3 (collagen type V alpha 3 chain)
Sus scrofa (pig) : COL5A3 (collagen type V alpha 3 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0821,786,324 - 21,831,751 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0821,842,413 - 21,887,757 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4819,789,061 - 19,834,241 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1819,789,060 - 19,834,241 (-)NCBI
Celera820,699,885 - 20,745,065 (-)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Col5a3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 70922
Created: 2002-07-09
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.