Maged2 (MAGE family member D2) - Rat Genome Database

Name: Maged2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| FTP Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Maged2 (MAGE family member D2) Rattus norvegicus

Analyze

Symbol:

Maged2

Name:

MAGE family member D2

RGD ID:

70899

Description:

Predicted to be involved in female pregnancy and renal sodium ion absorption. Predicted to localize to cytosol; nucleolus; and nucleoplasm. Human ortholog(s) of this gene implicated in Bartter disease type 5. Orthologous to human MAGED2 (MAGE family member D2); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

melanoma antigen family D, 2; melanoma antigen, family D, 2; melanoma-associated antigen D2; MGC124946

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MAGED2 (MAGE family member D2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Maged2 (MAGE family member D2)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Maged2 (MAGE family member D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MAGED2 (MAGE family member D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MAGED2 (MAGE family member D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Maged2 (MAGE family member D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	MAGED2 (MAGE family member D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Maged2 (MAGE family member D2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MAGED2 (MAGE family member D2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Maged2 (MAGE family member D2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	ndnl2 (necdin-like 2)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	MAGE	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	NSE3	Alliance	DIOPT (Hieranoid\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	X	19,733,593 - 19,741,769 (-)	NCBI
Rnor_6.0 Ensembl	5	33,174,542 - 33,182,715 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	33,174,539 - 33,182,715 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	37,832,720 - 37,840,896 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	40,056,332 - 40,064,505 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	X	40,109,805 - 40,116,420 (-)	NCBI
Celera	X	19,993,517 - 20,001,690 (-)	NCBI		Celera
Cytogenetic Map	5	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Bartter disease type 5 (ISO)

Dandy-Walker syndrome (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP,ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

carbon nanotube (ISO)

chlorohydrocarbon (EXP)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

corticosterone (EXP)

coumestrol (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diuron (EXP)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

furan (EXP)

indole-3-methanol (EXP)

indometacin (ISO)

L-methionine (ISO)

lithium chloride (ISO)

manganese atom (ISO)

manganese(0) (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (EXP)

N-nitrosodiethylamine (EXP,ISO)

oxaliplatin (EXP)

paracetamol (ISO)

phenobarbital (ISO)

piperonyl butoxide (ISO)

pirinixic acid (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

topotecan (EXP)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

female pregnancy (ISO)

renal sodium ion absorption (ISO)

Cellular Component

cytosol (IEA,ISO)

nucleolus (IEA,ISO)

nucleoplasm (IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated


1.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
2.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11856887	PMID:12477932	PMID:17154719	PMID:19946888	PMID:27120771

Genomics

Comparative Map Data

Maged2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	X	19,733,593 - 19,741,769 (-)	NCBI
Rnor_6.0 Ensembl	5	33,174,542 - 33,182,715 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	33,174,539 - 33,182,715 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	37,832,720 - 37,840,896 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	40,056,332 - 40,064,505 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	X	40,109,805 - 40,116,420 (-)	NCBI
Celera	X	19,993,517 - 20,001,690 (-)	NCBI		Celera
Cytogenetic Map	5	q13	NCBI

MAGED2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	X	54,807,599 - 54,816,015 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	X	54,807,745 - 54,816,015 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	X	54,834,178 - 54,842,448 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	54,850,896 - 54,859,170 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	X	54,718,513 - 54,725,466	NCBI
Celera	X	58,666,731 - 58,675,005 (+)	NCBI
Cytogenetic Map	X	p11.21	NCBI
HuRef	X	51,883,893 - 51,892,287 (+)	NCBI		HuRef
CHM1_1	X	54,824,597 - 54,833,013 (+)	NCBI		CHM1_1

Maged2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	149,589,417 - 149,597,358 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	X	149,589,366 - 149,597,341 (-)	Ensembl
GRCm38	X	150,806,421 - 150,814,362 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	150,806,370 - 150,814,345 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	147,240,964 - 147,248,825 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	X	146,147,137 - 146,154,998 (-)	NCBI			mm8
Celera	X	133,569,891 - 133,573,893 (-)	NCBI		Celera
Cytogenetic Map	X	F3	NCBI

Maged2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955475	2,038,189 - 2,046,290 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955475	2,038,189 - 2,046,240 (-)	NCBI	ChiLan1.0	ChiLan1.0

MAGED2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	X	55,241,161 - 55,249,577 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	55,241,161 - 55,249,256 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	X	47,010,009 - 47,018,370 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

MAGED2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	X	46,502,381 - 46,509,436 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	X	46,502,459 - 46,510,990 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Maged2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936751	1,639,276 - 1,647,494 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MAGED2
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	50,898,166 - 50,906,667 (+)	NCBI
ChlSab1.1 Ensembl	X	50,898,324 - 50,906,260 (+)	Ensembl

Maged2
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624910	37,155 - 47,711 (+)	NCBI

Position Markers

RH129635

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	5	33,174,548 - 33,174,715	NCBI	Rnor6.0
Rnor_5.0	5	37,832,729 - 37,832,896	UniSTS	Rnor5.0
RGSC_v3.4	X	40,056,338 - 40,056,505	UniSTS	RGSC3.4
Celera	X	19,993,523 - 19,993,690	UniSTS
RH 3.4 Map	X	211.23	UniSTS
Cytogenetic Map	X	q21	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	89432042	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	93273395	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	136640934	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	1525098	78720537	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	1666587	71552720	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	3251329	48722188	Rat
61462	Niddm10	Non-insulin dependent diabetes mellitus QTL 10	3.9	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	5	4525738	47978104	Rat
2293666	Bmd38	Bone mineral density QTL 38	4.4		femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	5	8632285	53632285	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9514842	103580403	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12651967	117554267	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	13288888	58288888	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	18847913	63847913	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	18847913	76608178	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	21904363	66904363	Rat
1549901	Neudeg2	Neurodegradation QTL 2	4	0	nervous system integrity trait (VT:0010566)	mononuclear cell count (CMO:0002119)	5	24956212	44747071	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	29078899	74078899	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	29078899	74078899	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	29641661	74641661	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	29641661	74641661	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31926122	136640934	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	190
Count of miRNA genes:	149
Interacting mature miRNAs:	162
Transcripts:	ENSRNOT00000044483
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	37	38	27	10	27	4	4	74	35	36	11	4
Low	1	6	19	14	9	14	4	7			5		4
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001271110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_080479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJ293617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY724507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC107467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM059132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000044483 ⟹ ENSRNOP00000042515

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	33,174,542 - 33,182,715 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080358 ⟹ ENSRNOP00000074736

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	33,174,542 - 33,182,147 (-)	Ensembl

RefSeq Acc Id:

NM_001271109 ⟹ NP_001258038

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	19,733,596 - 19,741,769 (-)	NCBI
Rnor_6.0	5	33,174,542 - 33,182,715 (-)	NCBI
Rnor_5.0	5	37,832,720 - 37,840,896 (-)	NCBI
Celera	X	19,993,517 - 20,001,690 (-)	NCBI

Sequence:

show sequence

CTGAGGAGCAGGCACACGCATCCCAGACTCACTGGAGGACAAGCTTTGCCAGGTGAACTTGAGA
CATGTCTGACACAAGTGAGAGTGGTGCAGATCCAGCTCGCTCTCAGGGCAAAGCTTCAGAAAAG
GACAGCGGCTCCATGATGCAGGACCTGTTGACTGTGACCCAGAACTTGGAGGTCTCAGAGACAC
CAAAGGCTAAAAAGGCACCAGAGGTCTCAGAAGCTGCAAAGGTCCCCAAAGCCTCTGGGAACCC
AAAGGCGACAGAGGTCTCAAAGGCCCCAGAGGCTTCGGAGGCAGCTGCCACCCAGGCCTCACCT
ACCACACAGCTGAGTGAGACCCAGGTTCTGGCAGCTGAAAACAAGAGTCCAGCAGCTGACACCA
AGACACAGAAGGCTGACCTGCAGGCTATGACAATGCCTGCAACCCAGACCAAAACGGTCAGTTC
TGTTACCGATTCTAAGGTCAATACAAAGACTCCGGAGACCGAGGCTCCTGCCTCTCAGTCTGGG
GCAGATGAACCAGAGCCTGAGGGTGCAGCTGTCCAAGTTCAGGAGAATCAGGATACTCGGCCCA
AGGTCAAAGCCAAGAATACCGAAAAGGGGAAACACCTGGAAGGGGAAGAGGACGGCAACAGTGA
TCAGAGTCAGACTTCAGAAACCACAGGTGGTCGGAGGGTCTCAAAGGCCCTAATGGCCTCCATG
GCCCGTAGAGCTTCAAGGGGACCCATAGCGTTCTGGGCCCGCAGGGCATCAAGGACTCGGTTGG
CTGCCTGGGCTCGGAGAGCTTTGCTCTCCCTGAGGTCACCTAGAGCTCGGAGAGGCAAGGCCCG
AAGAAGAGCTGCCAAGCTGCAGTCATCCCAGGAACCCGAAGCACCCCCACCCAGAGATGTGGCC
CTTTTACAAGGAAGGGCAAATGATTTGGTGAAGTACCTGTTGGCTAAAGATCAGACAAAGATTC
CCATCAGGCGCTCAGATATGCTGAAGGACATCATCAAAGAATATACGGATGTATACCCTGAAAT
CATTGAACGAGCAGGCTATTCCTTGGAGAAGGTATTTGGAATCCAACTGAAAGAAATTGACAAG
AATGACCACTTGTATATTCTTCTCAGTACCTTAGAGCCAACTGATGCAGGCATCCTGGGAACGA
CCAAGGACTCACCTAAGCTGGGCCTCCTCATGGTGCTTCTTAGCATCATCTTCATGAATGGAAA
TCGGTCCAGTGAGGCTGTCATCTGGGAGGTGCTGCGCAAGTTGGGGCTGCGCCCTGGGATACAT
CACTCACTCTTTGGGGATGTGAAGAAGCTCATTACTGATGAGTTTGTGAAGCAGAAGTACCTGG
ACTACGCTAGAGTACCCAATAGCAATCCTCCTGAGTATGAGTTCTTCTGGGGCCTACGCTCTTA
CTACGAGACCAGCAAGATGAAAGTTCTCAAGTTTGCCTGTAAGGTGCAAAAGAAAGATCCCAAA
GAATGGGCAGCTCAGTACCGAGAGGCAATGGAAGCAGATTTGAAGGCTGCGGCTGAGGCTGCTG
CCGAAGCCAAGGCGAGGGCTGAGATTAGAGCTCAGATGGGCATTGGGCTTGGCTCTGAGAATGC
TGCTGGGCCCTGCAACTGGGATGAAGCTGATATTGGACCCTGGGCAAAGGCCCGGATCCAGGCG
GGAGCTGAAACTAAAGCCAAAGCCCAAGAAAGTAGTGGTGCCAGTGCTGGTACTGGTGCCGGTG
CCAGTGCCAGTGCTGGTACCAGTGTCAGTACCAGTGGCACTGCTGGTTCTGGTGCTAATGCTGG
GGCCAGTGGGGGCTTCAGTACCAACCCCAGTCTGACTGCCAGTCTCACGTTTGGGCTCTTCGCT
GGCCTTAGTGGAGCTGGGGCCAGTAACAGTAGCAGCTCTGGTGCCTGTGGTTTCTCCTACAAGT
GAGATACAGATTGCTAATCACAGCGTCTTCTTCTCAAGCCAGGGTGCACTCTCAGACACTTATT
CAATGCAGCACTCTAGGCAACCGCTATCAATCAATTGAAGTCGACACTCTATATTAAATCTATT
TGCCATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001271110 ⟹ NP_001258039

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	19,733,596 - 19,741,185 (-)	NCBI
Rnor_6.0	5	33,174,542 - 33,182,131 (-)	NCBI
Rnor_5.0	5	37,832,720 - 37,840,896 (-)	NCBI
Celera	X	19,993,517 - 20,001,106 (-)	NCBI

Sequence:

show sequence

GGGAGGGCAGTATCTGAGTTTCGGAGGGGCTTGGAGAGAGTGGACACACTCAGGAATTGCAGGA
GGACGAGCTTTGCCAGGTGAACTTGAGACATGTCTGACACAAGTGAGAGTGGTGCAGATCCAGC
TCGCTCTCAGGGCAAAGCTTCAGAAAAGGACAGCGGCTCCATGATGCAGGACCTGTTGACTGTG
ACCCAGAACTTGGAGGTCTCAGAGACACCAAAGGCTAAAAAGGCACCAGAGGTCTCAGAAGCTG
CAAAGGTCCCCAAAGCCTCTGGGAACCCAAAGGCGACAGAGGTCTCAAAGGCCCCAGAGGCTTC
GGAGGCAGCTGCCACCCAGGCCTCACCTACCACACAGCTGAGTGAGACCCAGGTTCTGGCAGCT
GAAAACAAGAGTCCAGCAGCTGACACCAAGACACAGAAGGCTGACCTGCAGGCTATGACAATGC
CTGCAACCCAGACCAAAACGGTCAGTTCTGTTACCGATTCTAAGGTCAATACAAAGACTCCGGA
GACCGAGGCTCCTGCCTCTCAGTCTGGGGCAGATGAACCAGAGCCTGAGGGTGCAGCTGTCCAA
GTTCAGGAGAATCAGGATACTCGGCCCAAGGTCAAAGCCAAGAATACCGAAAAGGGGAAACACC
TGGAAGGGGAAGAGGACGGCAACAGTGATCAGAGTCAGACTTCAGAAACCACAGGTGGTCGGAG
GGTCTCAAAGGCCCTAATGGCCTCCATGGCCCGTAGAGCTTCAAGGGGACCCATAGCGTTCTGG
GCCCGCAGGGCATCAAGGACTCGGTTGGCTGCCTGGGCTCGGAGAGCTTTGCTCTCCCTGAGGT
CACCTAGAGCTCGGAGAGGCAAGGCCCGAAGAAGAGCTGCCAAGCTGCAGTCATCCCAGGAACC
CGAAGCACCCCCACCCAGAGATGTGGCCCTTTTACAAGGAAGGGCAAATGATTTGGTGAAGTAC
CTGTTGGCTAAAGATCAGACAAAGATTCCCATCAGGCGCTCAGATATGCTGAAGGACATCATCA
AAGAATATACGGATGTATACCCTGAAATCATTGAACGAGCAGGCTATTCCTTGGAGAAGGTATT
TGGAATCCAACTGAAAGAAATTGACAAGAATGACCACTTGTATATTCTTCTCAGTACCTTAGAG
CCAACTGATGCAGGCATCCTGGGAACGACCAAGGACTCACCTAAGCTGGGCCTCCTCATGGTGC
TTCTTAGCATCATCTTCATGAATGGAAATCGGTCCAGTGAGGCTGTCATCTGGGAGGTGCTGCG
CAAGTTGGGGCTGCGCCCTGGGATACATCACTCACTCTTTGGGGATGTGAAGAAGCTCATTACT
GATGAGTTTGTGAAGCAGAAGTACCTGGACTACGCTAGAGTACCCAATAGCAATCCTCCTGAGT
ATGAGTTCTTCTGGGGCCTACGCTCTTACTACGAGACCAGCAAGATGAAAGTTCTCAAGTTTGC
CTGTAAGGTGCAAAAGAAAGATCCCAAAGAATGGGCAGCTCAGTACCGAGAGGCAATGGAAGCA
GATTTGAAGGCTGCGGCTGAGGCTGCTGCCGAAGCCAAGGCGAGGGCTGAGATTAGAGCTCAGA
TGGGCATTGGGCTTGGCTCTGAGAATGCTGCTGGGCCCTGCAACTGGGATGAAGCTGATATTGG
ACCCTGGGCAAAGGCCCGGATCCAGGCGGGAGCTGAAACTAAAGCCAAAGCCCAAGAAAGTAGT
GGTGCCAGTGCTGGTACTGGTGCCGGTGCCAGTGCCAGTGCTGGTACCAGTGTCAGTACCAGTG
GCACTGCTGGTTCTGGTGCTAATGCTGGGGCCAGTGGGGGCTTCAGTACCAACCCCAGTCTGAC
TGCCAGTCTCACGTTTGGGCTCTTCGCTGGCCTTAGTGGAGCTGGGGCCAGTAACAGTAGCAGC
TCTGGTGCCTGTGGTTTCTCCTACAAGTGAGATACAGATTGCTAATCACAGCGTCTTCTTCTCA
AGCCAGGGTGCACTCTCAGACACTTATTCAATGCAGCACTCTAGGCAACCGCTATCAATCAATT
GAAGTCGACACTCTATATTAAATCTATTTGCCATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_080479 ⟹ NP_536727

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	19,733,596 - 19,741,769 (-)	NCBI
Rnor_6.0	5	33,174,542 - 33,182,715 (-)	NCBI
Rnor_5.0	5	37,832,720 - 37,840,896 (-)	NCBI
RGSC_v3.4	X	40,056,332 - 40,064,505 (-)	RGD
Celera	X	19,993,517 - 20,001,690 (-)	NCBI

Sequence:

show sequence

CTGAGGAGCAGGCACACGCATCCCAGACTCACTGGAGGACAAGCTTTGCCAGGTGAACTTGAGA
CATGTCTGACACAAGTGAGAGTGGTGCAGATCCAGCTCGCTCTCAGGGCAAAGCTTCAGAAAAG
GACAGCGGCTCCATGATGCAGGACCTGTTGACTGTGACCCAGAACTTGGAGGTCTCAGAGACAC
CAAAGGCTAAAAAGGCACCAGAGGTCTCAGAAGCTGCAAAGGTCCCCAAAGCCTCTGGGAACCC
AAAGGCGACAGAGGTCTCAAAGGCCCCAGAGGCTTCGGAGGCAGCTGCCACCCAGGCCTCACCT
ACCACACAGCTGAGTGAGACCCAGGTTCTGGCAGCTGAAAACAAGAGTCCAGCAGCTGACACCA
AGACACAGAAGGCTGACCTGCAGGCTATGACAATGCCTGCAACCCAGACCAAAACGGTCAGTTC
TGTTACCGATTCTAAGGTCAATACAAAGACTCCGGAGACCGAGGCTCCTGCCTCTCAGTCTGGG
GCAGATGAACCAGAGCCTGAGGGTGCAGCTGTCCAAGTTCAGGAGAATCAGGATACTCGGCCCA
AGGTCAAAGCCAAGAATACCGAAAAGGGGAAACACCTGGAAGGGGAAGAGGACGGCAACAGTGA
TCAGAGTCAGACTTCAGAAACCACAGGTGGTCGGAGGGTCTCAAAGGCCCTAATGGCCTCCATG
GCCCGTAGAGCTTCAAGGGGACCCATAGCGTTCTGGGCCCGCAGGGCATCAAGGACTCGGTTGG
CTGCCTGGGCTCGGAGAGCTTTGCTCTCCCTGAGGTCACCTAGAGCTCGGAGAGGCAAGGCCCG
AAGAAGAGCTGCCAAGCTGCAGTCATCCCAGGAACCCGAAGCACCCCCACCCAGAGATGTGGCC
CTTTTACAAGGAAGGGCAAATGATTTGGTGAAGTACCTGTTGGCTAAAGATCAGACAAAGATTC
CCATCAGGCGCTCAGATATGCTGAAGGACATCATCAAAGAATATACGGATGTATACCCTGAAAT
CATTGAACGAGCAGGCTATTCCTTGGAGAAGGTATTTGGAATCCAACTGAAAGAAATTGACAAG
AATGACCACTTGTATATTCTTCTCAGTACCTTAGAGCCAACTGATGCAGGCATCCTGGGAACGA
CCAAGGACTCACCTAAGCTGGGCCTCCTCATGGTGCTTCTTAGCATCATCTTCATGAATGGAAA
TCGGTCCAGTGAGGCTGTCATCTGGGAGGTGCTGCGCAAGTTGGGGCTGCGCCCTGGGATACAT
CACTCACTCTTTGGGGATGTGAAGAAGCTCATTACTGATGAGTTTGTGAAGCAGAAGTACCTGG
ACTACGCTAGAGTACCCAATAGCAATCCTCCTGAGTATGAGTTCTTCTGGGGCCTACGCTCTTA
CTACGAGACCAGCAAGATGAAAGTTCTCAAGTTTGCCTGTAAGGTGCAAAAGAAAGATCCCAAA
GAATGGGCAGCTCAGTACCGAGAGGCAATGGAAGCAGATTTGAAGGCTGCGGCTGAGGCTGCTG
CCGAAGCCAAGGCGAGGGCTGAGATTAGAGCTCAGATGGGCATTGGGCTTGGCTCTGAGAATGC
TGCTGGGCCCTGCAACTGGGATGAAGCTGATATTGGACCCTGGGCAAAGGCCCGGATCCAGGCG
GGAGCTGAAACTAAAGCCAAAGCCCAAGAAAGTAGTGGTGCCAGTGCTGGTACTGGTGCCGGTG
CCAGTGCCAGTGCTGGTACCAGTGTCAGTACCAGTGGCACTGCTGGTTCTGGTGCTAATGCTGG
GGCCAGTGGGGGCTTCAGTACCAACCCCAGTCTGACTGCCAGTCTCACGTTTGGGCTCTTCGCT
GGCCTTAGTGGAGCTGGGGCCAGTAACAGTAGCAGCTCTGGTGCCTGTGGTTTCTCCTACAAGT
GAGATACAGGTATCTGTCATGGGGGCAGTGAGGTGGCTGGGTCTTGGGGGGGATGGGGAGCTGA
CTCCTGGATTGAAGATAAGCCTGGGGCATGTGTAAAGATGGTAACCTGTTTGCCAGATATCAAC
TGACTGATTTTCCTTTATTTGTGTTTCCAGATTGCTAATCACAGCGTCTTCTTCTCAAGCCAGG
GTGCACTCTCAGACACTTATTCAATGCAGCACTCTAGGCAACCGCTATCAATCAATTGAAGTCG
ACACTCTATATTAAATCTATTTGCCATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006237924 ⟹ XP_006237986

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	19,733,593 - 19,740,468 (-)	NCBI
Rnor_6.0	5	33,174,539 - 33,181,398 (-)	NCBI
Rnor_5.0	5	37,832,720 - 37,840,896 (-)	NCBI

Sequence:

show sequence

GCTGCCGCGCTGGCACATCTTCCTGGAGGAGGGGAGGGTGCGGCTGCAGAGAACTGAGACCTAG
AGACAGAATTTCTGTATCTGAGCACCTACTGGTTGGGGCTCGGGGAGGGGCTGGGCTTTGGGGC
CCTAAAGAAGCTTTGCCAGGTGAACTTGAGACATGTCTGACACAAGTGAGAGTGGTGCAGATCC
AGCTCGCTCTCAGGGCAAAGCTTCAGAAAAGGACAGCGGCTCCATGATGCAGGACCTGTTGACT
GTGACCCAGAACTTGGAGGTCTCAGAGACACCAAAGGCTAAAAAGGCACCAGAGGTCTCAGAAG
CTGCAAAGGTCCCCAAAGCCTCTGGGAACCCAAAGGCGACAGAGGTCTCAAAGGCCCCAGAGGC
TTCGGAGGCAGCTGCCACCCAGGCCTCACCTACCACACAGCTGAGTGAGACCCAGGTTCTGGCA
GCTGAAAACAAGAGTCCAGCAGCTGACACCAAGACACAGAAGGCTGACCTGCAGGCTATGACAA
TGCCTGCAACCCAGACCAAAACGGTCAGTTCTGTTACCGATTCTAAGGTCAATACAAAGACTCC
GGAGACCGAGGCTCCTGCCTCTCAGTCTGGGGCAGATGAACCAGAGCCTGAGGGTGCAGCTGTC
CAAGTTCAGGAGAATCAGGATACTCGGCCCAAGGTCAAAGCCAAGAATACCGAAAAGGGGAAAC
ACCTGGAAGGGGAAGAGGACGGCAACAGTGATCAGAGTCAGACTTCAGAAACCACAGGTGGTCG
GAGGGTCTCAAAGGCCCTAATGGCCTCCATGGCCCGTAGAGCTTCAAGGGGACCCATAGCGTTC
TGGGCCCGCAGGGCATCAAGGACTCGGTTGGCTGCCTGGGCTCGGAGAGCTTTGCTCTCCCTGA
GGTCACCTAGAGCTCGGAGAGGCAAGGCCCGAAGAAGAGCTGCCAAGCTGCAGTCATCCCAGGA
ACCCGAAGCACCCCCACCCAGAGATGTGGCCCTTTTACAAGGAAGGGCAAATGATTTGGTGAAG
TACCTGTTGGCTAAAGATCAGACAAAGATTCCCATCAGGCGCTCAGATATGCTGAAGGACATCA
TCAAAGAATATACGGATGTATACCCTGAAATCATTGAACGAGCAGGCTATTCCTTGGAGAAGGT
ATTTGGAATCCAACTGAAAGAAATTGACAAGAATGACCACTTGTATATTCTTCTCAGTACCTTA
GAGCCAACTGATGCAGGCATCCTGGGAACGACCAAGGACTCACCTAAGCTGGGCCTCCTCATGG
TGCTTCTTAGCATCATCTTCATGAATGGAAATCGGTCCAGTGAGGCTGTCATCTGGGAGGTGCT
GCGCAAGTTGGGGCTGCGCCCTGGGATACATCACTCACTCTTTGGGGATGTGAAGAAGCTCATT
ACTGATGAGTTTGTGAAGCAGAAGTACCTGGACTACGCTAGAGTACCCAATAGCAATCCTCCTG
AGTATGAGTTCTTCTGGGGCCTACGCTCTTACTACGAGACCAGCAAGATGAAAGTTCTCAAGTT
TGCCTGTAAGGTGCAAAAGAAAGATCCCAAAGAATGGGCAGCTCAGTACCGAGAGGCAATGGAA
GCAGATTTGAAGGCTGCGGCTGAGGCTGCTGCCGAAGCCAAGGCGAGGGCTGAGATTAGAGCTC
AGATGGGCATTGGGCTTGGCTCTGAGAATGCTGCTGGGCCCTGCAACTGGGATGAAGCTGATAT
TGGACCCTGGGCAAAGGCCCGGATCCAGGCGGGAGCTGAAACTAAAGCCAAAGCCCAAGAAAGT
AGTGGTGCCAGTGCTGGTACTGGTGCCGGTGCCAGTGCCAGTGCTGGTACCAGTGTCAGTACCA
GTGGCACTGCTGGTTCTGGTGCTAATGCTGGGGCCAGTGGGGGCTTCAGTACCAACCCCAGTCT
GACTGCCAGTCTCACGTTTGGGCTCTTCGCTGGCCTTAGTGGAGCTGGGGCCAGTAACAGTAGC
AGCTCTGGTGCCTGTGGTTTCTCCTACAAGTGAGATACAGATTGCTAATCACAGCGTCTTCTTC
TCAAGCCAGGGTGCACTCTCAGACACTTATTCAATGCAGCACTCTAGGCAACCGCTATCAATCA
ATTGAAGTCGACACTCTATATTAAATCTATTTGCCATTTCTGA

hide sequence

RefSeq Acc Id:

XM_017593115 ⟹ XP_017448604

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	19,733,593 - 19,740,645 (-)	NCBI
Rnor_6.0	5	33,174,539 - 33,181,542 (-)	NCBI

Sequence:

show sequence

GCGCATGTGCACGGTGGACTTCAAAGAACGGCTTTGCCAGGTGAACTTGAGACATGTCTGACAC
AAGTGAGAGTGGTGCAGATCCAGCTCGCTCTCAGGGCAAAGCTTCAGAAAAGGACAGCGGCTCC
ATGATGCAGGACCTGTTGACTGTGACCCAGAACTTGGAGGTCTCAGAGACACCAAAGGCTAAAA
AGGCACCAGAGGTCTCAGAAGCTGCAAAGGTCCCCAAAGCCTCTGGGAACCCAAAGGCGACAGA
GGTCTCAAAGGCCCCAGAGGCTTCGGAGGCAGCTGCCACCCAGGCCTCACCTACCACACAGCTG
AGTGAGACCCAGGTTCTGGCAGCTGAAAACAAGAGTCCAGCAGCTGACACCAAGACACAGAAGG
CTGACCTGCAGGCTATGACAATGCCTGCAACCCAGACCAAAACGGTCAGTTCTGTTACCGATTC
TAAGGTCAATACAAAGACTCCGGAGACCGAGGCTCCTGCCTCTCAGTCTGGGGCAGATGAACCA
GAGCCTGAGGGTGCAGCTGTCCAAGTTCAGGAGAATCAGGATACTCGGCCCAAGGTCAAAGCCA
AGAATACCGAAAAGGGGAAACACCTGGAAGGGGAAGAGGACGGCAACAGTGATCAGAGTCAGAC
TTCAGAAACCACAGGTGGTCGGAGGGTCTCAAAGGCCCTAATGGCCTCCATGGCCCGTAGAGCT
TCAAGGGGACCCATAGCGTTCTGGGCCCGCAGGGCATCAAGGACTCGGTTGGCTGCCTGGGCTC
GGAGAGCTTTGCTCTCCCTGAGGTCACCTAGAGCTCGGAGAGGCAAGGCCCGAAGAAGAGCTGC
CAAGCTGCAGTCATCCCAGGAACCCGAAGCACCCCCACCCAGAGATGTGGCCCTTTTACAAGGA
AGGGCAAATGATTTGGTGAAGTACCTGTTGGCTAAAGATCAGACAAAGATTCCCATCAGGCGCT
CAGATATGCTGAAGGACATCATCAAAGAATATACGGATGTATACCCTGAAATCATTGAACGAGC
AGGCTATTCCTTGGAGAAGGTATTTGGAATCCAACTGAAAGAAATTGACAAGAATGACCACTTG
TATATTCTTCTCAGTACCTTAGAGCCAACTGATGCAGGCATCCTGGGAACGACCAAGGACTCAC
CTAAGCTGGGCCTCCTCATGGTGCTTCTTAGCATCATCTTCATGAATGGAAATCGGTCCAGTGA
GGCTGTCATCTGGGAGGTGCTGCGCAAGTTGGGGCTGCGCCCTGGGATACATCACTCACTCTTT
GGGGATGTGAAGAAGCTCATTACTGATGAGTTTGTGAAGCAGAAGTACCTGGACTACGCTAGAG
TACCCAATAGCAATCCTCCTGAGTATGAGTTCTTCTGGGGCCTACGCTCTTACTACGAGACCAG
CAAGATGAAAGTTCTCAAGTTTGCCTGTAAGGTGCAAAAGAAAGATCCCAAAGAATGGGCAGCT
CAGTACCGAGAGGCAATGGAAGCAGATTTGAAGGCTGCGGCTGAGGCTGCTGCCGAAGCCAAGG
CGAGGGCTGAGATTAGAGCTCAGATGGGCATTGGGCTTGGCTCTGAGAATGCTGCTGGGCCCTG
CAACTGGGATGAAGCTGATATTGGACCCTGGGCAAAGGCCCGGATCCAGGCGGGAGCTGAAACT
AAAGCCAAAGCCCAAGAAAGTAGTGGTGCCAGTGCTGGTACTGGTGCCGGTGCCAGTGCCAGTG
CTGGTACCAGTGTCAGTACCAGTGGCACTGCTGGTTCTGGTGCTAATGCTGGGGCCAGTGGGGG
CTTCAGTACCAACCCCAGTCTGACTGCCAGTCTCACGTTTGGGCTCTTCGCTGGCCTTAGTGGA
GCTGGGGCCAGTAACAGTAGCAGCTCTGGTGCCTGTGGTTTCTCCTACAAGTGAGATACAGATT
GCTAATCACAGCGTCTTCTTCTCAAGCCAGGGTGCACTCTCAGACACTTATTCAATGCAGCACT
CTAGGCAACCGCTATCAATCAATTGAAGTCGACACTCTATATTAAATCTATTTGCCATTTCTGA

hide sequence

RefSeq Acc Id:

XM_039099392 ⟹ XP_038955320

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	19,733,593 - 19,740,483 (-)	NCBI

RefSeq Acc Id:

XM_039099393 ⟹ XP_038955321

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	19,733,593 - 19,740,053 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258038	(Get FASTA)	NCBI Sequence Viewer
	NP_001258039	(Get FASTA)	NCBI Sequence Viewer
	NP_536727	(Get FASTA)	NCBI Sequence Viewer
	XP_006237986	(Get FASTA)	NCBI Sequence Viewer
	XP_017448604	(Get FASTA)	NCBI Sequence Viewer
	XP_038955320	(Get FASTA)	NCBI Sequence Viewer
	XP_038955321	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI07468	(Get FASTA)	NCBI Sequence Viewer
	CAC20865	(Get FASTA)	NCBI Sequence Viewer
	EDL86329	(Get FASTA)	NCBI Sequence Viewer
	EDL86330	(Get FASTA)	NCBI Sequence Viewer
	EDL86331	(Get FASTA)	NCBI Sequence Viewer
	EDL86332	(Get FASTA)	NCBI Sequence Viewer
	EDL86333	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_536727 ⟸ NM_080479

- UniProtKB:

Q3B7U1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSDTSESGADPARSQGKASEKDSGSMMQDLLTVTQNLEVSETPKAKKAPEVSEAAKVPKASGNP
KATEVSKAPEASEAAATQASPTTQLSETQVLAAENKSPAADTKTQKADLQAMTMPATQTKTVSS
VTDSKVNTKTPETEAPASQSGADEPEPEGAAVQVQENQDTRPKVKAKNTEKGKHLEGEEDGNSD
QSQTSETTGGRRVSKALMASMARRASRGPIAFWARRASRTRLAAWARRALLSLRSPRARRGKAR
RRAAKLQSSQEPEAPPPRDVALLQGRANDLVKYLLAKDQTKIPIRRSDMLKDIIKEYTDVYPEI
IERAGYSLEKVFGIQLKEIDKNDHLYILLSTLEPTDAGILGTTKDSPKLGLLMVLLSIIFMNGN
RSSEAVIWEVLRKLGLRPGIHHSLFGDVKKLITDEFVKQKYLDYARVPNSNPPEYEFFWGLRSY
YETSKMKVLKFACKVQKKDPKEWAAQYREAMEADLKAAAEAAAEAKARAEIRAQMGIGLGSENA
AGPCNWDEADIGPWAKARIQAGAETKAKAQESSGASAGTGAGASASAGTSVSTSGTAGSGANAG
ASGGFSTNPSLTASLTFGLFAGLSGAGASNSSSSGACGFSYK

hide sequence

RefSeq Acc Id:

NP_001258038 ⟸ NM_001271109

- UniProtKB:

Q3B7U1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSDTSESGADPARSQGKASEKDSGSMMQDLLTVTQNLEVSETPKAKKAPEVSEAAKVPKASGNP
KATEVSKAPEASEAAATQASPTTQLSETQVLAAENKSPAADTKTQKADLQAMTMPATQTKTVSS
VTDSKVNTKTPETEAPASQSGADEPEPEGAAVQVQENQDTRPKVKAKNTEKGKHLEGEEDGNSD
QSQTSETTGGRRVSKALMASMARRASRGPIAFWARRASRTRLAAWARRALLSLRSPRARRGKAR
RRAAKLQSSQEPEAPPPRDVALLQGRANDLVKYLLAKDQTKIPIRRSDMLKDIIKEYTDVYPEI
IERAGYSLEKVFGIQLKEIDKNDHLYILLSTLEPTDAGILGTTKDSPKLGLLMVLLSIIFMNGN
RSSEAVIWEVLRKLGLRPGIHHSLFGDVKKLITDEFVKQKYLDYARVPNSNPPEYEFFWGLRSY
YETSKMKVLKFACKVQKKDPKEWAAQYREAMEADLKAAAEAAAEAKARAEIRAQMGIGLGSENA
AGPCNWDEADIGPWAKARIQAGAETKAKAQESSGASAGTGAGASASAGTSVSTSGTAGSGANAG
ASGGFSTNPSLTASLTFGLFAGLSGAGASNSSSSGACGFSYK

hide sequence

RefSeq Acc Id:

NP_001258039 ⟸ NM_001271110

- UniProtKB:

Q3B7U1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSDTSESGADPARSQGKASEKDSGSMMQDLLTVTQNLEVSETPKAKKAPEVSEAAKVPKASGNP
KATEVSKAPEASEAAATQASPTTQLSETQVLAAENKSPAADTKTQKADLQAMTMPATQTKTVSS
VTDSKVNTKTPETEAPASQSGADEPEPEGAAVQVQENQDTRPKVKAKNTEKGKHLEGEEDGNSD
QSQTSETTGGRRVSKALMASMARRASRGPIAFWARRASRTRLAAWARRALLSLRSPRARRGKAR
RRAAKLQSSQEPEAPPPRDVALLQGRANDLVKYLLAKDQTKIPIRRSDMLKDIIKEYTDVYPEI
IERAGYSLEKVFGIQLKEIDKNDHLYILLSTLEPTDAGILGTTKDSPKLGLLMVLLSIIFMNGN
RSSEAVIWEVLRKLGLRPGIHHSLFGDVKKLITDEFVKQKYLDYARVPNSNPPEYEFFWGLRSY
YETSKMKVLKFACKVQKKDPKEWAAQYREAMEADLKAAAEAAAEAKARAEIRAQMGIGLGSENA
AGPCNWDEADIGPWAKARIQAGAETKAKAQESSGASAGTGAGASASAGTSVSTSGTAGSGANAG
ASGGFSTNPSLTASLTFGLFAGLSGAGASNSSSSGACGFSYK

hide sequence

RefSeq Acc Id:	XP_006237986 ⟸ XM_006237924
- Peptide Label:	isoform X1
- UniProtKB:	Q3B7U1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDTSESGADPARSQGKASEKDSGSMMQDLLTVTQNLEVSETPKAKKAPEVSEAAKVPKASGNP KATEVSKAPEASEAAATQASPTTQLSETQVLAAENKSPAADTKTQKADLQAMTMPATQTKTVSS VTDSKVNTKTPETEAPASQSGADEPEPEGAAVQVQENQDTRPKVKAKNTEKGKHLEGEEDGNSD QSQTSETTGGRRVSKALMASMARRASRGPIAFWARRASRTRLAAWARRALLSLRSPRARRGKAR RRAAKLQSSQEPEAPPPRDVALLQGRANDLVKYLLAKDQTKIPIRRSDMLKDIIKEYTDVYPEI IERAGYSLEKVFGIQLKEIDKNDHLYILLSTLEPTDAGILGTTKDSPKLGLLMVLLSIIFMNGN RSSEAVIWEVLRKLGLRPGIHHSLFGDVKKLITDEFVKQKYLDYARVPNSNPPEYEFFWGLRSY YETSKMKVLKFACKVQKKDPKEWAAQYREAMEADLKAAAEAAAEAKARAEIRAQMGIGLGSENA AGPCNWDEADIGPWAKARIQAGAETKAKAQESSGASAGTGAGASASAGTSVSTSGTAGSGANAG ASGGFSTNPSLTASLTFGLFAGLSGAGASNSSSSGACGFSYK hide sequence

RefSeq Acc Id:	XP_017448604 ⟸ XM_017593115
- Peptide Label:	isoform X1
- UniProtKB:	Q3B7U1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDTSESGADPARSQGKASEKDSGSMMQDLLTVTQNLEVSETPKAKKAPEVSEAAKVPKASGNP KATEVSKAPEASEAAATQASPTTQLSETQVLAAENKSPAADTKTQKADLQAMTMPATQTKTVSS VTDSKVNTKTPETEAPASQSGADEPEPEGAAVQVQENQDTRPKVKAKNTEKGKHLEGEEDGNSD QSQTSETTGGRRVSKALMASMARRASRGPIAFWARRASRTRLAAWARRALLSLRSPRARRGKAR RRAAKLQSSQEPEAPPPRDVALLQGRANDLVKYLLAKDQTKIPIRRSDMLKDIIKEYTDVYPEI IERAGYSLEKVFGIQLKEIDKNDHLYILLSTLEPTDAGILGTTKDSPKLGLLMVLLSIIFMNGN RSSEAVIWEVLRKLGLRPGIHHSLFGDVKKLITDEFVKQKYLDYARVPNSNPPEYEFFWGLRSY YETSKMKVLKFACKVQKKDPKEWAAQYREAMEADLKAAAEAAAEAKARAEIRAQMGIGLGSENA AGPCNWDEADIGPWAKARIQAGAETKAKAQESSGASAGTGAGASASAGTSVSTSGTAGSGANAG ASGGFSTNPSLTASLTFGLFAGLSGAGASNSSSSGACGFSYK hide sequence

RefSeq Acc Id:

ENSRNOP00000074736 ⟸ ENSRNOT00000080358

RefSeq Acc Id:

ENSRNOP00000042515 ⟸ ENSRNOT00000044483

RefSeq Acc Id:	XP_038955320 ⟸ XM_039099392
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038955321 ⟸ XM_039099393
- Peptide Label:	isoform X2

Protein Domains

MAGE

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693585

Promoter ID:

EPDNEW_R4110

Type:

initiation region

Name:

Maged2_2

Description:

MAGE family member D2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R4111

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	33,182,120 - 33,182,180	EPDNEW

RGD ID:

13693586

Promoter ID:

EPDNEW_R4111

Type:

multiple initiation site

Name:

Maged2_1

Description:

MAGE family member D2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R4110

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	33,182,729 - 33,182,789	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
5	37835623	37835624	C	T	snv	DOB/Oda (KyushuU), BUF/MNa (KyushuU), HWY/Slc (KyushuU), BDIX/NemOda (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), LE/Stm (KyushuU)
5	37836412	37836413	G	T	snv	SBH/Ygl (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), FHH/EurMcwi (MCW)
5	37836984	37836985	C	T	snv	SR/JrHsd (MCW), SBN/Ygl (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), GH/OmrMcwi (MCW)
5	37836996	37836997	T	G	snv	FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), SBN/Ygl (MCW)

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
5	33178210	33178211	C	G	snv	LE/Stm (RGD), WKY/Gcrc (RGD), SR/JrHsd (RGD), LEW/NCrlBR (RGD), CDS, CDR, BBDP/Wor (RGD), SHR/NHsd (RGD), F344/NCrl (RGD), SBH/Ygl (RGD), MHS/Gib (RGD)
5	33178216	33178217	G	A	snv	LE/Stm (RGD), F344/NCrl (RGD), BBDP/Wor (RGD), CDR, SR/JrHsd (RGD), SHR/NHsd (RGD), SBH/Ygl (RGD), MHS/Gib (RGD), LEW/NCrlBR (RGD)
5	33178221	33178222	A	G	snv	BBDP/Wor (RGD), SR/JrHsd (RGD), SHR/NHsd (RGD), F344/NCrl (RGD), CDR, LEW/NCrlBR (RGD), LE/Stm (RGD)
5	33178231	33178232	G	T	snv	SR/JrHsd (RGD), SHR/NHsd (RGD), F344/NCrl (RGD), CDR, LE/Stm (RGD)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
X	40059232	40059233	C	T	snv	HCR/2Mco (UMich), HCR/1Mco (UMich), LCR/1Mco (UMich), LCR/2Mco (UMich)
X	40060000	40060001	C	G	snv	HCR/2Mco (UMich), LCR/1Mco (UMich), HCR/1Mco (UMich), LCR/2Mco (UMich)
X	40060006	40060007	G	A	snv	HCR/2Mco (UMich), LCR/1Mco (UMich), HCR/1Mco (UMich), LCR/2Mco (UMich)
X	40060011	40060012	A	G	snv	LCR/2Mco (UMich), HCR/2Mco (UMich), HCR/1Mco (UMich), LCR/1Mco (UMich)
X	40060021	40060022	G	T	snv	LCR/2Mco (UMich), HCR/2Mco (UMich), LCR/1Mco (UMich), FHL/EurMcwi (MCW), HCR/1Mco (UMich), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), FHH/EurMcwi (MCW)
X	40060038	40060039	T	A	snv	HCR/1Mco (UMich), LCR/2Mco (UMich), HCR/2Mco (UMich), LCR/1Mco (UMich)
X	40060063	40060064	G	T	snv	LCR/1Mco (UMich), HCR/2Mco (UMich), LCR/2Mco (UMich), HCR/1Mco (UMich)
X	40060066	40060067	T	C	snv	LCR/2Mco (UMich), LCR/1Mco (UMich), HCR/1Mco (UMich), HCR/2Mco (UMich)
X	40060069	40060070	C	G	snv	HCR/2Mco (UMich), HCR/1Mco (UMich), LCR/1Mco (UMich), LCR/2Mco (UMich)
X	40060593	40060594	C	T	snv	FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), ACI/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
X	40060605	40060606	T	G	snv	FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:70899	AgrOrtholog
Ensembl Genes	ENSRNOG00000002449	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000042515	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000074736	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000044483	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000080358	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.1200	UniProtKB/TrEMBL
	1.10.10.1210	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7135182	IMAGE-MGC_LOAD
	IMAGE:7459969	IMAGE-MGC_LOAD
InterPro	MAGE	UniProtKB/TrEMBL
	MAGE	UniProtKB/TrEMBL
	MAGE_WH1	UniProtKB/TrEMBL
	MAGE_WH2	UniProtKB/TrEMBL
	MAGED2	UniProtKB/TrEMBL
KEGG Report	rno:113947	UniProtKB/TrEMBL
MGC_CLONE	MGC:124946	IMAGE-MGC_LOAD
	MGC:93244	IMAGE-MGC_LOAD
NCBI Gene	113947	ENTREZGENE
PANTHER	PTHR11736	UniProtKB/TrEMBL
	PTHR11736:SF11	UniProtKB/TrEMBL
Pfam	MAGE	UniProtKB/TrEMBL
PhenoGen	Maged2	PhenoGen
PROSITE	MAGE	UniProtKB/TrEMBL
SMART	MAGE	UniProtKB/TrEMBL
UniProt	Q3B7U1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-10	Maged2	MAGE family member D2	Maged2	melanoma antigen, family D, 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-07-09	Maged2	melanoma antigen, family D, 2			Symbol and Name updated to reflect Human and Mouse nomenclature	70877	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM