LOC259246 (alpha-2u globulin PGCL1) - Rat Genome Database

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Gene: LOC259246 (alpha-2u globulin PGCL1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC259246
Name: alpha-2u globulin PGCL1
RGD ID: 708506
Description: Predicted to enable insulin-activated receptor activity and pheromone binding activity. Predicted to be involved in several processes, including locomotor rhythm; mitochondrion morphogenesis; and negative regulation of biosynthetic process. Located in extracellular space.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: allergen n I; allergen Rat n I; alpha(2)-euglobulin; alpha-2u-globulin; major urinary protein; MGC112596; MGC124936; Mup
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl577,338,853 - 77,342,299 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl577,430,401 - 77,433,847 (-)EnsemblRnor6.0rn6Rnor6.0
RGSC_v3.4578,707,324 - 78,710,745 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1578,712,436 - 78,715,858 (-)NCBI
Cytogenetic Map5 NCBI


References

Additional References at PubMed
PMID:1279439   PMID:2005132   PMID:2418834   PMID:2439333   PMID:2447393   PMID:2468522   PMID:6163771   PMID:6183262   PMID:8645715   PMID:12477932   PMID:15489334   PMID:25797582  


Genomics


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000076906   ⟹   ENSRNOP00000068371
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl577,430,401 - 77,433,847 (-)Ensembl
RefSeq Acc Id: NM_147214
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.4578,707,324 - 78,710,745 (-)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: ENSRNOP00000068371   ⟸   ENSRNOT00000076906

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708506 AgrOrtholog
Ensembl Genes ENSRNOG00000042543 Ensembl
  ENSRNOG00000046529 Ensembl
Gene3D-CATH 2.40.128.20 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7322607 IMAGE-MGC_LOAD
  IMAGE:7367233 IMAGE-MGC_LOAD
  IMAGE:7370970 IMAGE-MGC_LOAD
InterPro Calycin UniProtKB/Swiss-Prot
  Lipocalin UniProtKB/Swiss-Prot
  Lipocalin_CS UniProtKB/Swiss-Prot
  Lipocln_cytosolic_FA-bd_dom UniProtKB/Swiss-Prot
  Maj_urinary UniProtKB/Swiss-Prot
MGC_CLONE MGC:108577 IMAGE-MGC_LOAD
  MGC:112596 IMAGE-MGC_LOAD
  MGC:124936 IMAGE-MGC_LOAD
NCBI Gene 259246 ENTREZGENE
PANTHER PTHR11430 UniProtKB/Swiss-Prot
Pfam Lipocalin UniProtKB/Swiss-Prot
PhenoGen LOC259246 PhenoGen
PRINTS MAJORURINARY UniProtKB/Swiss-Prot
PROSITE LIPOCALIN UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50814 UniProtKB/Swiss-Prot
UniProt MUP_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q54AE7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2003-09-23 LOC259246  alpha-2u globulin PGCL1      Symbol and Name status set to provisional 70820 PROVISIONAL