Cep104 (centrosomal protein 104) - Rat Genome Database

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Gene: Cep104 (centrosomal protein 104) Rattus norvegicus
Analyze
Symbol: Cep104
Name: centrosomal protein 104
RGD ID: 708505
Description: Enables glutamate binding activity; glycine binding activity; and thienylcyclohexylpiperidine binding activity. Predicted to be located in centriole. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in Joubert syndrome 25. Orthologous to human CEP104 (centrosomal protein 104); INTERACTS WITH bisphenol A; methamphetamine; paracetamol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: centrosomal protein of 104 kDa; GlyBP; glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein; LOC246295
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25164,534,773 - 164,567,260 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5164,534,782 - 164,567,248 (+)Ensembl
Rnor_6.05171,262,278 - 171,294,560 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5171,262,278 - 171,294,559 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05174,753,900 - 174,786,095 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45170,762,437 - 170,793,899 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15170,785,668 - 170,805,838 (+)NCBI
Celera5162,746,921 - 162,779,233 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centriole  (ISO)
cilium  (IBA)
cytoplasm  (IEA)
spindle pole  (IEA)

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:8939461   PMID:21399614  


Genomics

Comparative Map Data
Cep104
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25164,534,773 - 164,567,260 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5164,534,782 - 164,567,248 (+)Ensembl
Rnor_6.05171,262,278 - 171,294,560 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5171,262,278 - 171,294,559 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05174,753,900 - 174,786,095 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45170,762,437 - 170,793,899 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15170,785,668 - 170,805,838 (+)NCBI
Celera5162,746,921 - 162,779,233 (+)NCBICelera
Cytogenetic Map5q36NCBI
CEP104
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813,812,086 - 3,857,211 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl13,812,086 - 3,857,396 (-)EnsemblGRCh38hg38GRCh38
GRCh3713,728,650 - 3,773,775 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613,721,204 - 3,763,657 (-)NCBINCBI36hg18NCBI36
Celera12,982,705 - 3,023,114 (-)NCBI
Cytogenetic Map1p36.32NCBI
HuRef13,024,327 - 3,069,355 (-)NCBIHuRef
CHM1_113,715,664 - 3,760,800 (-)NCBICHM1_1
T2T-CHM13v2.013,323,682 - 3,368,809 (-)NCBI
Cep104
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394154,059,649 - 154,093,189 (+)NCBIGRCm39mm39
GRCm39 Ensembl4154,059,651 - 154,093,189 (+)Ensembl
GRCm384153,975,126 - 154,008,732 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4153,975,194 - 154,008,732 (+)EnsemblGRCm38mm10GRCm38
MGSCv374153,349,670 - 153,381,334 (+)NCBIGRCm37mm9NCBIm37
MGSCv364152,819,361 - 152,851,025 (+)NCBImm8
Celera4156,263,741 - 156,294,655 (+)NCBICelera
Cytogenetic Map4E2NCBI
Cep104
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554867,853,641 - 7,876,047 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554867,849,921 - 7,877,598 (+)NCBIChiLan1.0ChiLan1.0
CEP104
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113,607,940 - 3,649,450 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13,606,659 - 3,648,832 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012,485,711 - 2,529,745 (-)NCBIMhudiblu_PPA_v0panPan3
CEP104
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1558,301,767 - 58,339,920 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl558,305,589 - 58,335,438 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha558,312,060 - 58,350,211 (-)NCBI
ROS_Cfam_1.0558,509,183 - 58,547,344 (-)NCBI
ROS_Cfam_1.0 Ensembl558,511,699 - 58,547,609 (-)Ensembl
UMICH_Zoey_3.1558,516,904 - 58,555,051 (-)NCBI
UNSW_CanFamBas_1.0558,385,797 - 58,423,948 (-)NCBI
UU_Cfam_GSD_1.0558,776,065 - 58,814,220 (-)NCBI
Cep104
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505829,338,027 - 29,369,250 (-)NCBI
SpeTri2.0NW_00493673798,346 - 127,932 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP104
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl665,274,486 - 65,310,728 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1665,274,092 - 65,310,735 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2660,132,912 - 60,157,253 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CEP104
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120127,823,789 - 127,866,172 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl20127,828,995 - 127,865,544 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605432,025,707 - 32,077,919 (+)NCBIVero_WHO_p1.0
Cep104
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248186,716,695 - 6,737,883 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248186,712,616 - 6,737,377 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH133619  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25164,566,782 - 164,566,988 (+)MAPPERmRatBN7.2
Rnor_6.05171,294,094 - 171,294,299NCBIRnor6.0
Rnor_5.05174,785,629 - 174,785,834UniSTSRnor5.0
RGSC_v3.45170,794,882 - 170,795,087UniSTSRGSC3.4
Celera5162,778,767 - 162,778,972UniSTS
RH 3.4 Map51138.3UniSTS
Cytogenetic Map5q36UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:255
Count of miRNA genes:164
Interacting mature miRNAs:215
Transcripts:ENSRNOT00000031138
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 29 28 14 14 14 3 74 35 41 11
Low 3 14 29 27 5 27 8 8 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_145082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA924538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI289406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB544954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB792008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK843167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO390283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV797293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV722335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM108776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U53513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000031138   ⟹   ENSRNOP00000034972
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5164,534,956 - 164,567,248 (+)Ensembl
Rnor_6.0 Ensembl5171,262,278 - 171,294,559 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077307   ⟹   ENSRNOP00000069101
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5164,534,782 - 164,567,244 (+)Ensembl
Rnor_6.0 Ensembl5171,274,544 - 171,294,555 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108344   ⟹   ENSRNOP00000077236
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5164,539,835 - 164,567,248 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109206   ⟹   ENSRNOP00000077901
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5164,534,956 - 164,567,248 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111354   ⟹   ENSRNOP00000076639
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5164,534,956 - 164,567,248 (+)Ensembl
RefSeq Acc Id: NM_145082   ⟹   NP_659550
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25164,534,956 - 164,567,249 (+)NCBI
Rnor_6.05171,262,278 - 171,294,560 (+)NCBI
Rnor_5.05174,753,900 - 174,786,095 (+)NCBI
Celera5162,746,921 - 162,779,233 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039109276   ⟹   XP_038965204
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25164,534,773 - 164,567,260 (+)NCBI
RefSeq Acc Id: XM_039109277   ⟹   XP_038965205
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25164,535,024 - 164,567,260 (+)NCBI
RefSeq Acc Id: XM_039109278   ⟹   XP_038965206
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25164,535,024 - 164,567,260 (+)NCBI
RefSeq Acc Id: XM_039109279   ⟹   XP_038965207
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25164,534,773 - 164,567,260 (+)NCBI
RefSeq Acc Id: XR_005504363
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25164,535,024 - 164,567,252 (+)NCBI
RefSeq Acc Id: XR_005504364
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25164,535,024 - 164,567,252 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_659550   ⟸   NM_145082
- UniProtKB: D3Z8X7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000034972   ⟸   ENSRNOT00000031138
RefSeq Acc Id: ENSRNOP00000069101   ⟸   ENSRNOT00000077307
RefSeq Acc Id: XP_038965204   ⟸   XM_039109276
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965207   ⟸   XM_039109279
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038965205   ⟸   XM_039109277
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038965206   ⟸   XM_039109278
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000077901   ⟸   ENSRNOT00000109206
RefSeq Acc Id: ENSRNOP00000077236   ⟸   ENSRNOT00000108344
RefSeq Acc Id: ENSRNOP00000076639   ⟸   ENSRNOT00000111354

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z8X7-F1-model_v2 AlphaFold D3Z8X7 1-922 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708505 AgrOrtholog
BioCyc Gene G2FUF-38974 BioCyc
Ensembl Genes ENSRNOG00000025000 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000034972 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000069101 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000077236 ENTREZGENE
Ensembl Transcript ENSRNOT00000031138 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000077307 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000108344 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/Swiss-Prot
  TOG UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:246295 UniProtKB/Swiss-Prot
NCBI Gene 246295 ENTREZGENE
PhenoGen Cep104 PhenoGen
SMART TOG UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49785 UniProtKB/Swiss-Prot
UniProt A0A1P0QEF5_RAT UniProtKB/TrEMBL
  CE104_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A0A0G2JUH6 UniProtKB/Swiss-Prot
  Q62965 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-17 Cep104  centrosomal protein 104  LOC246295  glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 LOC246295        Symbol and Name status set to provisional 70820 PROVISIONAL