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Gene: Begain (brain-enriched guanylate kinase-associated) Rattus norvegicus

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Symbol:

Begain

Name:

brain-enriched guanylate kinase-associated

RGD ID:

708347

Description:

Predicted to be involved in evoked excitatory postsynaptic potential and regulation of postsynaptic neurotransmitter receptor activity. Located in several cellular components, including dendrite; neuronal cell body; and synapse. Is active in glutamatergic synapse and postsynapse. Orthologous to human BEGAIN (brain enriched guanylate kinase associated); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

brain-enriched guanylate kinase-associated protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	133,708,010 - 133,744,264 (-)	NCBI		GRCr8
mRatBN7.2	6	127,943,651 - 127,979,876 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	127,943,651 - 127,979,841 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	128,066,312 - 128,102,557 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	128,362,113 - 128,398,358 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	127,721,997 - 127,758,239 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	132,936,964 - 132,972,569 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	132,936,970 - 132,972,511 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	142,107,875 - 142,129,457 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	133,296,175 - 133,317,921 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	133,303,261 - 133,323,875 (+)	NCBI
Celera	6	125,492,047 - 125,528,044 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Kagami-Ogata syndrome (ISO)

Marfanoid Mental Retardation Syndrome, Autosomal (ISO)

papillary thyroid carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (EXP)

cisplatin (ISO)

cocaine (EXP)

copper atom (EXP)

copper(0) (EXP)

coumarin (ISO)

D-glucose (ISO)

decabromodiphenyl ether (EXP)

dorsomorphin (ISO)

ethanol (ISO)

ethylparaben (ISO)

fipronil (EXP)

flusilazole (EXP)

FR900359 (ISO)

fructose (ISO)

gentamycin (EXP)

glucose (ISO)

herbicide (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

panobinostat (ISO)

paracetamol (EXP)

pentanal (ISO)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

thapsigargin (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

evoked excitatory postsynaptic potential (IBA,ISO)

regulation of postsynaptic neurotransmitter receptor activity (ISO)

Cellular Component

cytoplasm (IEA)

cytosol (TAS)

dendrite (IDA)

glutamatergic synapse (IDA,ISO)

membrane (IEA)

neuronal cell body (IDA)

nucleus (IDA)

postsynapse (IDA)

presynapse (ISO)

synapse (IBA,IDA)

Molecular Function

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	BEGAIN (brain-enriched guanylate kinase-associated protein), a novel neuronal PSD-95/SAP90-binding protein.	Deguchi M, etal., J Biol Chem 1998 Oct 9;273(41):26269-72.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Synaptic and nuclear localization of brain-enriched guanylate kinase-associated protein.	Yao I, etal., J Neurosci. 2002 Jul 1;22(13):5354-64.

Additional References at PubMed

PMID:22871113	PMID:27785460

Genomics

Comparative Map Data

Begain
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	133,708,010 - 133,744,264 (-)	NCBI		GRCr8
mRatBN7.2	6	127,943,651 - 127,979,876 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	127,943,651 - 127,979,841 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	128,066,312 - 128,102,557 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	128,362,113 - 128,398,358 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	127,721,997 - 127,758,239 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	132,936,964 - 132,972,569 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	132,936,970 - 132,972,511 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	142,107,875 - 142,129,457 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	133,296,175 - 133,317,921 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	133,303,261 - 133,323,875 (+)	NCBI
Celera	6	125,492,047 - 125,528,044 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

BEGAIN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	100,537,147 - 100,587,417 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	100,537,147 - 100,587,417 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	101,003,484 - 101,053,754 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	100,073,240 - 100,105,884 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	100,073,240 - 100,105,884	NCBI
Celera	14	81,058,597 - 81,067,990 (-)	NCBI		Celera
Cytogenetic Map	14	q32.2	NCBI
HuRef	14	81,184,789 - 81,217,351 (-)	NCBI		HuRef
CHM1_1	14	100,941,743 - 100,974,254 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	94,770,948 - 94,821,230 (-)	NCBI		T2T-CHM13v2.0

Begain
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	108,998,107 - 109,034,168 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	108,998,113 - 109,034,143 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	109,032,181 - 109,068,242 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	109,032,187 - 109,068,217 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	110,270,392 - 110,306,427 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	109,479,989 - 109,535,141 (-)	NCBI		MGSCv36	mm8
Celera	12	110,263,785 - 110,300,128 (-)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI
cM Map	12	59.98	NCBI

Begain
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	21,572,079 - 21,580,311 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	21,572,080 - 21,580,311 (-)	NCBI	ChiLan1.0	ChiLan1.0

BEGAIN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	101,688,579 - 101,740,523 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	100,905,073 - 100,957,017 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	81,157,642 - 81,209,503 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	100,471,147 - 100,484,789 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	100,471,969 - 100,512,416 (-)	Ensembl	panpan1.1		panPan2

BEGAIN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	68,794,403 - 68,838,471 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	68,795,049 - 68,838,789 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	68,312,154 - 68,356,461 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	69,077,572 - 69,121,859 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	69,078,224 - 69,112,547 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	68,739,219 - 68,783,609 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	68,805,347 - 68,849,655 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	69,202,993 - 69,230,912 (-)	NCBI		UU_Cfam_GSD_1.0

Begain
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	5,904,482 - 5,919,740 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936604	4,162,658 - 4,195,815 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936604	4,162,728 - 4,195,540 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BEGAIN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	121,389,563 - 121,434,426 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	121,389,554 - 121,434,420 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	132,475,790 - 132,478,450 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BEGAIN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	78,501,920 - 78,552,954 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	78,501,870 - 78,511,496 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	65,640,475 - 65,690,691 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Begain
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	3,596,597 - 3,634,836 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	3,596,499 - 3,634,255 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Begain
97 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	90
Count of miRNA genes:	73
Interacting mature miRNAs:	77
Transcripts:	ENSRNOT00000041903
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	94968928	139968928	Rat
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	104085867	128713626	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	72202632	130919985	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	105156861	140994061	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	100364669	140994061	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	122549046	140994061	Rat
2312560	Pur20	Proteinuria QTL 20	2.1	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	125628133	137801795	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	100671796	132340886	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	93701310	128713626	Rat
8552796	Vie3	Viral induced encephalitis QTL 3	2.6		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	6	96833997	140994061	Rat
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	106752656	132339866	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	72227641	130729205	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	85140138	130140138	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	122549046	137801795	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	94968928	137848904	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	85311061	133478515	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	88047916	133047916	Rat
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	85140138	130140138	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	72202632	130729475	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	112636280	140994061	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	116506292	130245370	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	72227641	130729205	Rat
738034	Anxrr5	Anxiety related response QTL 5	5.9		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	6	84130881	129130881	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
1300076	Glom8	Glomerulus QTL 8	7	9e-09	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	86894788	131894788	Rat
2293085	Iddm29	Insulin dependent diabetes mellitus QTL 29	7.66		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	122549046	140286318	Rat

Markers in Region

D6Wox34

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	127,944,225 - 127,944,504 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	132,937,539 - 132,937,817	NCBI	Rnor6.0
Rnor_5.0	6	142,108,450 - 142,108,728	UniSTS	Rnor5.0
RGSC_v3.4	6	133,317,068 - 133,317,346	UniSTS	RGSC3.4
Celera	6	125,492,622 - 125,492,900	UniSTS
Cytogenetic Map	6	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	87	86	55	25	55	6	214	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001111115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_024163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF064868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF064869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP478305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB801805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041903 ⟹ ENSRNOP00000049699

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	127,943,651 - 127,965,397 (-)	Ensembl
Rnor_6.0 Ensembl	6	132,936,970 - 132,958,546 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082216 ⟹ ENSRNOP00000071412

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	127,943,651 - 127,979,841 (-)	Ensembl
Rnor_6.0 Ensembl	6	132,937,891 - 132,972,511 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095766 ⟹ ENSRNOP00000088091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	127,943,651 - 127,971,058 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117298 ⟹ ENSRNOP00000086294

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	127,943,651 - 127,951,189 (-)	Ensembl

RefSeq Acc Id:

NM_001111115 ⟹ NP_001104585

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,010 - 133,729,756 (-)	NCBI
mRatBN7.2	6	127,943,651 - 127,965,397 (-)	NCBI
Rnor_6.0	6	132,936,964 - 132,958,546 (-)	NCBI
Rnor_5.0	6	142,107,875 - 142,129,457 (-)	NCBI
RGSC_v3.4	6	133,296,175 - 133,317,921 (+)	RGD
Celera	6	125,492,047 - 125,513,794 (-)	NCBI

Sequence:

show sequence

CCGGACCGAGCGGAGCGCGCTCCCGGCGGACGCGGCGCGGCGCCCAGCGCGAGGGTCCGGGATG
GGCAGCGATCAGTCTTCCCAGGCCTCTGCCGCAGACATGGAGAAACTCAGTGCGCTGCAGGAAC
AGAAGGGCGAGCTGCGCAAGCGCCTGTCCTACACCACGCACAAGTTGGAGAAGCTGGAGACGGA
GTTTGACTCCACCCGCCACTATCTGGAGATTGAGCTGAGGCGCGCACAGGAGGAGCTGGACAAG
GTCACCGAGAAACTGCGCAGGATTCAGAGCAACTACATGGCACTCCAGAGGATCAACCAAGAGC
TGGAAGACAAGCTGTACCGGATGGGCCAGCACTATGAGGAAGAGAAGCGTGCCATGAGCCACGA
GATTGTCGCCCTCAACAGCCACCTGCTGGAGGCTAAGGTGACCATTGACAAGCTGTCAGAAGAC
AACGAGCTCTATAGGAAGGACTGCAATCTAGCGGCCCAGCTGCTGCAGTGCAGCCAGACCTACG
GCAGGGTCCATAAGGTGTCCGAGCTGCCCTCGGACTTCCAGCAGCGTGTGAGCCTGCATATGGA
GAAGCATGGCTGCAGCCTGCCGTCCCCACTGTGCCATCCGTCCTACGCCGACAGCGTGCCCACC
TGCGTCATCGCCAAGGTGCTGGAGAAGCCCGACCCTGGCAGCCTGTCCTCGCGCATGTCGGATG
CCTCGGCCCGCGACCTGGCCTACCGCGACGGAGTGGAGAACCCGGGCCCGCGACCCCCGTACAA
GGGAGACATCTACTGCAGCGACACGGCTCTCTACTGCCCTGACGAGCGAGATCACGACCGGCGG
CCCAGCGTGGACACGCCGGTGACCGACGTGGGCTTCCTGCGTGCGCAGAATTCCACCGACAGCC
TGGCGGAAGAGGAGGAGGCCGAGGCGGCGGCCTTCCCGGAGGCCTACCGTCGCGAGGCCTTCCA
GGGCTACGCGGCCTCGCTGCCCACGTCCAGCTCCTACTCCAGCTTCAGCGCCACGTCCGAGGAG
AAGGAGCACGCGCAGGCCAGCACGCTGACCGCCTCGCAGCAGGCCATCTACCTGAACAGCCGCG
AAGAGCTCTTCAGCCGCAAGCCGCCCTCCGCCACCTACGGCAGCAGCCCTCGCTACGCCAAGGC
CGCGGCCACCCTGGGCTCCCCGCTCGAGGCCCAGGTAGCCCCAGGCTTCGCTCGGACTGTGTCT
CCGTACCCGGCCGAGCCCTACCGCTATCCGGCCTCCCAGCAGGCTCTCATGCCTCCCAACCTGT
GGAGCCTGCGGGCCAAGCCGAGCGGTAACCGGCTTGCCGCCCGGGAGGACATTCGAGGCCAGTG
GCGGCCCCTGAGCGTGGAGGATGTGGGCGCCTACTCTTACCAGGCCGGCGCTGCAGGCCGCGCC
GCCTCGCCCTGCAACTTCTCAGAACGTTTCTACGGCGGCGGTGGCGGCGGCGGCAGCCCGGGCA
AGAATGCCGAGGGCCGTGCCAGCCCCCTCTATGCCAGCTACAAAGCCGATAGTTTCTCGGAGGG
CGATGACCTCTCCCAGGGTCATCTGGCCGAGCCCTGCTTCCTCCGAGCGGGTGGTGATCTGAGC
CTCAGCCCCAGCCGTTCAGCTGATCCTCTCCCTGGCTATGCCACCAGTGACGGGGATGGGGATA
GGCTCGGGGTGCAGCTGTGTGGGCCTGGCAGTAGCCCGGAGCCCGAGCACGGCTCCCGGGATTC
CCTGGAGCCTAGCTCCATGGAGGCCTCTCCCGAAATGCACCCTCCAACCCGCCTCAGCCCCCAG
CAGGCCTTCCCAAGGACTGGAGGCTCTGGGCTGAGCCGCAAGGACAGTCTCACTAAGGCCCAGC
TCTACGGAACCCTGCTCAACTGACTGCCATCAGCAGGCTGCAGTCAGGGGCTCCCTACCACCCT
GCCCCATATAGGGAGTAGCTAACCCCCTCGTCCCAACCCCTGCTAAGGAACTCCAGTTCCAGTT
CCAGTTCCTGTTCCAGTTCCAGTTCCTGTTCCAGTTCCTGTTCCAGTTCCAGTTCCCGTTCCTG
TTCCAGTTCCTGTTCCAGTTCCAGTTCCCGTTCCAGTTCCCGTTCCTGTTCCAGTTCCCGTTCC
AGTTCCTGTTCCAGTTCCAGTTCCTCCTGACCCTGTTACTAACACCCCAGTAGAACCTGAAAAG
ACCCCCTCTGCCAATCGTCTTGTCCACCCCAGCCTCTGCTGCAAACCCTACCCAGAATATTTCC
GCTCTGCACCCTTCCCTGAAGTGAGCATCCCCTGTTTTATAAGTGAAGCTATTTTTTTAGGGAA
AAAGAGCGTTTGTTCACGCACTTGCTGCCAACTTCTGGATGGCAGCCTTGGCGTACCCCACACG
AAGTTCCTTCATTTCCAGTGAGGGTGCTTGGGGCCTGCCCCAGGGAAGGGGAGGCTGGGGCCCT
AGAGGGACCAGTCTCCACAAGTAGGGAGAAGCCAGCAACAAGGGAATTCTGAAGTTCTGAACAC
TGAGGAGGGGAACCAAAGCCACTTAGGGCGCAGAAAATGTCTTATGCTCGCTCCCGTGTCACAG
TGCAGCCAGCACTCCGCCCTGATCCACCCTGAGCTCTTCCGTGGCCCGGCCTGTGGGCCCAAGA
GGGGCCAGGGACACCCCCAGAACAGCCGGTGCTCGTTCCTCCCCTCCCCCTCCCAACACCACCC
GACTCTACCTCAGACATGAGGCTCCTCCCACCCTTGTGCACCTGTCGTCTGTGATGCATGCCGT
CCGTTAGAACTGTATTTCACATTCCTTAATAAAGGACAGCAGTGGAAAGAGAAAA

hide sequence

RefSeq Acc Id:

NM_024163 ⟹ NP_077077

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,010 - 133,744,230 (-)	NCBI
mRatBN7.2	6	127,943,651 - 127,979,871 (-)	NCBI
Rnor_6.0	6	132,936,964 - 132,972,569 (-)	NCBI
Rnor_5.0	6	142,107,875 - 142,129,457 (-)	NCBI
RGSC_v3.4	6	133,296,175 - 133,317,921 (+)	RGD
Celera	6	125,492,047 - 125,528,044 (-)	RGD

Sequence:

show sequence

CCCTGCGGGAAGCGGGGCGCTGGGGAGCCCCGGCCGCGGGCTCGGGCGCGCAGAGCCGGGGCCA
TGTGGACGGGCGGCCGGCGGCCGGGCCGGCTTCGCCGGGCGGCCTCTGCCGCAGACATGGAGAA
ACTCAGTGCGCTGCAGGAACAGAAGGGCGAGCTGCGCAAGCGCCTGTCCTACACCACGCACAAG
TTGGAGAAGCTGGAGACGGAGTTTGACTCCACCCGCCACTATCTGGAGATTGAGCTGAGGCGCG
CACAGGAGGAGCTGGACAAGGTCACCGAGAAACTGCGCAGGATTCAGAGCAACTACATGGCACT
CCAGAGGATCAACCAAGAGCTGGAAGACAAGCTGTACCGGATGGGCCAGCACTATGAGGAAGAG
AAGCGTGCCATGAGCCACGAGATTGTCGCCCTCAACAGCCACCTGCTGGAGGCTAAGGTGACCA
TTGACAAGCTGTCAGAAGACAACGAGCTCTATAGGAAGGACTGCAATCTAGCGGCCCAGCTGCT
GCAGTGCAGCCAGACCTACGGCAGGGTCCATAAGGTGTCCGAGCTGCCCTCGGACTTCCAGCAG
CGTGTGAGCCTGCATATGGAGAAGCATGGCTGCAGCCTGCCGTCCCCACTGTGCCATCCGTCCT
ACGCCGACAGCGTGCCCACCTGCGTCATCGCCAAGGTGCTGGAGAAGCCCGACCCTGGCAGCCT
GTCCTCGCGCATGTCGGATGCCTCGGCCCGCGACCTGGCCTACCGCGACGGAGTGGAGAACCCG
GGCCCGCGACCCCCGTACAAGGGAGACATCTACTGCAGCGACACGGCTCTCTACTGCCCTGACG
AGCGAGATCACGACCGGCGGCCCAGCGTGGACACGCCGGTGACCGACGTGGGCTTCCTGCGTGC
GCAGAATTCCACCGACAGCCTGGCGGAAGAGGAGGAGGCCGAGGCGGCGGCCTTCCCGGAGGCC
TACCGTCGCGAGGCCTTCCAGGGCTACGCGGCCTCGCTGCCCACGTCCAGCTCCTACTCCAGCT
TCAGCGCCACGTCCGAGGAGAAGGAGCACGCGCAGGCCAGCACGCTGACCGCCTCGCAGCAGGC
CATCTACCTGAACAGCCGCGAAGAGCTCTTCAGCCGCAAGCCGCCCTCCGCCACCTACGGCAGC
AGCCCTCGCTACGCCAAGGCCGCGGCCACCCTGGGCTCCCCGCTCGAGGCCCAGGTAGCCCCAG
GCTTCGCTCGGACTGTGTCTCCGTACCCGGCCGAGCCCTACCGCTATCCGGCCTCCCAGCAGGC
TCTCATGCCTCCCAACCTGTGGAGCCTGCGGGCCAAGCCGAGCGGTAACCGGCTTGCCGCCCGG
GAGGACATTCGAGGCCAGTGGCGGCCCCTGAGCGTGGAGGATGTGGGCGCCTACTCTTACCAGG
CCGGCGCTGCAGGCCGCGCCGCCTCGCCCTGCAACTTCTCAGAACGTTTCTACGGCGGCGGTGG
CGGCGGCGGCAGCCCGGGCAAGAATGCCGAGGGCCGTGCCAGCCCCCTCTATGCCAGCTACAAA
GCCGATAGTTTCTCGGAGGGCGATGACCTCTCCCAGGGTCATCTGGCCGAGCCCTGCTTCCTCC
GAGCGGGTGGTGATCTGAGCCTCAGCCCCAGCCGTTCAGCTGATCCTCTCCCTGGCTATGCCAC
CAGTGACGGGGATGGGGATAGGCTCGGGGTGCAGCTGTGTGGGCCTGGCAGTAGCCCGGAGCCC
GAGCACGGCTCCCGGGATTCCCTGGAGCCTAGCTCCATGGAGGCCTCTCCCGAAATGCACCCTC
CAACCCGCCTCAGCCCCCAGCAGGCCTTCCCAAGGACTGGAGGCTCTGGGCTGAGCCGCAAGGA
CAGTCTCACTAAGGCCCAGCTCTACGGAACCCTGCTCAACTGACTGCCATCAGCAGGCTGCAGT
CAGGGGCTCCCTACCACCCTGCCCCATATAGGGAGTAGCTAACCCCCTCGTCCCAACCCCTGCT
AAGGAACTCCAGTTCCAGTTCCAGTTCCTGTTCCAGTTCCAGTTCCTGTTCCAGTTCCTGTTCC
AGTTCCAGTTCCCGTTCCTGTTCCAGTTCCTGTTCCAGTTCCAGTTCCCGTTCCAGTTCCCGTT
CCTGTTCCAGTTCCCGTTCCAGTTCCTGTTCCAGTTCCAGTTCCTCCTGACCCTGTTACTAACA
CCCCAGTAGAACCTGAAAAGACCCCCTCTGCCAATCGTCTTGTCCACCCCAGCCTCTGCTGCAA
ACCCTACCCAGAATATTTCCGCTCTGCACCCTTCCCTGAAGTGAGCATCCCCTGTTTTATAAGT
GAAGCTATTTTTTTAGGGAAAAAGAGCGTTTGTTCACGCACTTGCTGCCAACTTCTGGATGGCA
GCCTTGGCGTACCCCACACGAAGTTCCTTCATTTCCAGTGAGGGTGCTTGGGGCCTGCCCCAGG
GAAGGGGAGGCTGGGGCCCTAGAGGGACCAGTCTCCACAAGTAGGGAGAAGCCAGCAACAAGGG
AATTCTGAAGTTCTGAACACTGAGGAGGGGAACCAAAGCCACTTAGGGCGCAGAAAATGTCTTA
TGCTCGCTCCCGTGTCACAGTGCAGCCAGCACTCCGCCCTGATCCACCCTGAGCTCTTCCGTGG
CCCGGCCTGTGGGCCCAAGAGGGGCCAGGGACACCCCCAGAACAGCCGGTGCTCGTTCCTCCCC
TCCCCCTCCCAACACCACCCGACTCTACCTCAGACATGAGGCTCCTCCCACCCTTGTGCACCTG
TCGTCTGTGATGCATGCCGTCCGTTAGAACTGTATTTCACATTCCTTAATAAAGGACAGCAGTG
GAAAGAGAAAA

hide sequence

RefSeq Acc Id:

XM_017594386 ⟹ XP_017449875

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,744,240 (-)	NCBI
mRatBN7.2	6	127,943,651 - 127,979,823 (-)	NCBI
Rnor_6.0	6	132,936,964 - 132,972,539 (-)	NCBI

Sequence:

show sequence

CGCGGGCTCGGGCGCGCAGAGCCGGGCCATGTGGACGGGCGGCCGGCGGCCGGGCGCTTCGCCG
GGCGGCCTCTGCCGCAGACATGGAGAAACTCAGGCTGCACAGCCCCTGGGTGCCCTTGTGCCTC
GGGCAGCCCCGAGTCCTGCAGGGTCGCCTGGCCAGGTCCTTACCCTCGCTCTGGGACAGTGCGC
TGCAGGAACAGAAGGGCGAGCTGCGCAAGCGCCTGTCCTACACCACGCACAAGTTGGAGAAGCT
GGAGACGGAGTTTGACTCCACCCGCCACTATCTGGAGATTGAGCTGAGGCGCGCACAGGAGGAG
CTGGACAAGGTCACCGAGAAACTGCGCAGGATTCAGAGCAACTACATGGCACTCCAGAGGATCA
ACCAAGAGCTGGAAGACAAGCTGTACCGGATGGGCCAGCACTATGAGGAAGAGAAGCGTGCCAT
GAGCCACGAGATTGTCGCCCTCAACAGCCACCTGCTGGAGGCTAAGGTGACCATTGACAAGCTG
TCAGAAGACAACGAGCTCTATAGGAAGGACTGCAATCTAGCGGCCCAGCTGCTGCAGTGCAGCC
AGACCTACGGCAGGGTCCATAAGGTGTCCGAGCTGCCCTCGGACTTCCAGCAGCGTGTGAGCCT
GCATATGGAGAAGCATGGCTGCAGCCTGCCGTCCCCACTGTGCCATCCGTCCTACGCCGACAGC
GTGCCCACCTGCGTCATCGCCAAGGTGCTGGAGAAGCCCGACCCTGGCAGCCTGTCCTCGCGCA
TGTCGGATGCCTCGGCCCGCGACCTGGCCTACCGCGACGGAGTGGAGAACCCGGGCCCGCGACC
CCCGTACAAGGGAGACATCTACTGCAGCGACACGGCTCTCTACTGCCCTGACGAGCGAGATCAC
GACCGGCGGCCCAGCGTGGACACGCCGGTGACCGACGTGGGCTTCCTGCGTGCGCAGAATTCCA
CCGACAGCCTGGCGGAAGAGGAGGAGGCCGAGGCGGCGGCCTTCCCGGAGGCCTACCGTCGCGA
GGCCTTCCAGGGCTACGCGGCCTCGCTGCCCACGTCCAGCTCCTACTCCAGCTTCAGCGCCACG
TCCGAGGAGAAGGAGCACGCGCAGGCCAGCACGCTGACCGCCTCGCAGCAGGCCATCTACCTGA
ACAGCCGCGAAGAGCTCTTCAGCCGCAAGCCGCCCTCCGCCACCTACGGCAGCAGCCCTCGCTA
CGCCAAGGCCGCGGCCACCCTGGGCTCCCCGCTCGAGGCCCAGGTAGCCCCAGGCTTCGCTCGG
ACTGTGTCTCCGTACCCGGCCGAGCCCTACCGCTATCCGGCCTCCCAGCAGGCTCTCATGCCTC
CCAACCTGTGGAGCCTGCGGGCCAAGCCGAGCGGTAACCGGCTTGCCGCCCGGGAGGACATTCG
AGGCCAGTGGCGGCCCCTGAGCGTGGAGGATGTGGGCGCCTACTCTTACCAGGCCGGCGCTGCA
GGCCGCGCCGCCTCGCCCTGCAACTTCTCAGAACGTTTCTACGGCGGCGGTGGCGGCGGCGGCA
GCCCGGGCAAGAATGCCGAGGGCCGTGCCAGCCCCCTCTATGCCAGCTACAAAGCCGATAGTTT
CTCGGAGGGCGATGACCTCTCCCAGGGTCATCTGGCCGAGCCCTGCTTCCTCCGAGCGGGTGGT
GATCTGAGCCTCAGCCCCAGCCGTTCAGCTGATCCTCTCCCTGGCTATGCCACCAGTGACGGGG
ATGGGGATAGGCTCGGGGTGCAGCTGTGTGGGCCTGGCAGTAGCCCGGAGCCCGAGCACGGCTC
CCGGGATTCCCTGGAGCCTAGCTCCATGGAGGCCTCTCCCGAAATGCACCCTCCAACCCGCCTC
AGCCCCCAGCAGGCCTTCCCAAGGACTGGAGGCTCTGGGCTGAGCCGCAAGGACAGTCTCACTA
AGGCCCAGCTCTACGGAACCCTGCTCAACTGACTGCCATCAGCAGGCTGCAGTCAGGGGCTCCC
TACCACCCTGCCCCATATAGGGAGTAGCTAACCCCCTCGTCCCAACCCCTGCTAAGGAACTCCA
GTTCCAGTTCCAGTTCCTGTTCCAGTTCCAGTTCCTGTTCCAGTTCCTGTTCCAGTTCCAGTTC
CCGTTCCTGTTCCAGTTCCTGTTCCAGTTCCAGTTCCCGTTCCAGTTCCCGTTCCTGTTCCAGT
TCCCGTTCCAGTTCCTGTTCCAGTTCCAGTTCCTCCTGACCCTGTTACTAACACCCCAGTAGAA
CCTGAAAAGACCCCCTCTGCCAATCGTCTTGTCCACCCCAGCCTCTGCTGCAAACCCTACCCAG
AATATTTCCGCTCTGCACCCTTCCCTGAAGTGAGCATCCCCTGTTTTATAAGTGAAGCTATTTT
TTTAGGGAAAAAGAGCGTTTGTTCACGCACTTGCTGCCAACTTCTGGATGGCAGCCTTGGCGTA
CCCCACACGAAGTTCCTTCATTTCCAGTGAGGGTGCTTGGGGCCTGCCCCAGGGAAGGGGAGGC
TGGGGCCCTAGAGGGACCAGTCTCCACAAGTAGGGAGAAGCCAGCAACAAGGGAATTCTGAAGT
TCTGAACACTGAGGAGGGGAACCAAAGCCACTTAGGGCGCAGAAAATGTCTTATGCTCGCTCCC
GTGTCACAGTGCAGCCAGCACTCCGCCCTGATCCACCCTGAGCTCTTCCGTGGCCCGGCCTGTG
GGCCCAAGAGGGGCCAGGGACACCCCCAGAACAGCCGGTGCTCGTTCCTCCCCTCCCCCTCCCA
ACACCACCCGACTCTACCTCAGACATGAGGCTCCTCCCACCCTTGTGCACCTGTCGTCTGTGAT
GCATGCCGTCCGTTAGAACTGTATTTCACATTCCTTAATAAAGGACAGCAGTGGAAAGAG

hide sequence

RefSeq Acc Id:

XM_039112981 ⟹ XP_038968909

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,744,242 (-)	NCBI
mRatBN7.2	6	127,943,651 - 127,979,823 (-)	NCBI

RefSeq Acc Id:

XM_039112984 ⟹ XP_038968912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,729,710 (-)	NCBI
mRatBN7.2	6	127,943,651 - 127,965,335 (-)	NCBI

RefSeq Acc Id:

XM_039112985 ⟹ XP_038968913

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,744,264 (-)	NCBI
mRatBN7.2	6	127,943,651 - 127,979,876 (-)	NCBI

RefSeq Acc Id:

XM_039112986 ⟹ XP_038968914

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,729,569 (-)	NCBI
mRatBN7.2	6	127,943,651 - 127,965,292 (-)	NCBI

RefSeq Acc Id:

XM_039112987 ⟹ XP_038968915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,729,778 (-)	NCBI
mRatBN7.2	6	127,943,651 - 127,965,402 (-)	NCBI

RefSeq Acc Id:

XM_039112988 ⟹ XP_038968916

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,730,352 (-)	NCBI
mRatBN7.2	6	127,943,651 - 127,966,007 (-)	NCBI

RefSeq Acc Id:

XM_039112990 ⟹ XP_038968918

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,717,141 (-)	NCBI
mRatBN7.2	6	127,943,651 - 127,952,830 (-)	NCBI

RefSeq Acc Id:

XM_063262539 ⟹ XP_063118609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,725,355 (-)	NCBI

RefSeq Acc Id:

XM_063262540 ⟹ XP_063118610

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,729,097 (-)	NCBI

RefSeq Acc Id:

XM_063262541 ⟹ XP_063118611

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,725,354 (-)	NCBI

RefSeq Acc Id:

XM_063262542 ⟹ XP_063118612

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,729,679 (-)	NCBI

RefSeq Acc Id:

XM_063262543 ⟹ XP_063118613

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,729,126 (-)	NCBI

RefSeq Acc Id:

XM_063262544 ⟹ XP_063118614

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,744,264 (-)	NCBI

RefSeq Acc Id:

XM_063262545 ⟹ XP_063118615

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	133,708,011 - 133,744,224 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001104585	(Get FASTA)	NCBI Sequence Viewer
	NP_077077	(Get FASTA)	NCBI Sequence Viewer
	XP_017449875	(Get FASTA)	NCBI Sequence Viewer
	XP_038968909	(Get FASTA)	NCBI Sequence Viewer
	XP_038968912	(Get FASTA)	NCBI Sequence Viewer
	XP_038968913	(Get FASTA)	NCBI Sequence Viewer
	XP_038968914	(Get FASTA)	NCBI Sequence Viewer
	XP_038968915	(Get FASTA)	NCBI Sequence Viewer
	XP_038968916	(Get FASTA)	NCBI Sequence Viewer
	XP_038968918	(Get FASTA)	NCBI Sequence Viewer
	XP_063118609	(Get FASTA)	NCBI Sequence Viewer
	XP_063118610	(Get FASTA)	NCBI Sequence Viewer
	XP_063118611	(Get FASTA)	NCBI Sequence Viewer
	XP_063118612	(Get FASTA)	NCBI Sequence Viewer
	XP_063118613	(Get FASTA)	NCBI Sequence Viewer
	XP_063118614	(Get FASTA)	NCBI Sequence Viewer
	XP_063118615	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC63267	(Get FASTA)	NCBI Sequence Viewer
	AAC63268	(Get FASTA)	NCBI Sequence Viewer
	EDL97539	(Get FASTA)	NCBI Sequence Viewer
	EDL97540	(Get FASTA)	NCBI Sequence Viewer
	EDL97541	(Get FASTA)	NCBI Sequence Viewer
	EDL97542	(Get FASTA)	NCBI Sequence Viewer
	EDL97543	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000049699
	ENSRNOP00000049699.3
	ENSRNOP00000071412
	ENSRNOP00000071412.2
	ENSRNOP00000086294.1
	ENSRNOP00000088091.1
	ENSRNOP00000099151
	ENSRNOP00000099634
	ENSRNOP00000100911
	ENSRNOP00000102527
	ENSRNOP00000104689
GenBank Protein	O88881	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_077077 ⟸ NM_024163
- Peptide Label:	isoform 2
- UniProtKB:	O88882 (UniProtKB/Swiss-Prot), O88881 (UniProtKB/Swiss-Prot), A6KBI9 (UniProtKB/TrEMBL), A0A0G2K0E5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWTGGRRPGRLRRAASAADMEKLSALQEQKGELRKRLSYTTHKLEKLETEFDSTRHYLEIELRR AQEELDKVTEKLRRIQSNYMALQRINQELEDKLYRMGQHYEEEKRAMSHEIVALNSHLLEAKVT IDKLSEDNELYRKDCNLAAQLLQCSQTYGRVHKVSELPSDFQQRVSLHMEKHGCSLPSPLCHPS YADSVPTCVIAKVLEKPDPGSLSSRMSDASARDLAYRDGVENPGPRPPYKGDIYCSDTALYCPD ERDHDRRPSVDTPVTDVGFLRAQNSTDSLAEEEEAEAAAFPEAYRREAFQGYAASLPTSSSYSS FSATSEEKEHAQASTLTASQQAIYLNSREELFSRKPPSATYGSSPRYAKAAATLGSPLEAQVAP GFARTVSPYPAEPYRYPASQQALMPPNLWSLRAKPSGNRLAAREDIRGQWRPLSVEDVGAYSYQ AGAAGRAASPCNFSERFYGGGGGGGSPGKNAEGRASPLYASYKADSFSEGDDLSQGHLAEPCFL RAGGDLSLSPSRSADPLPGYATSDGDGDRLGVQLCGPGSSPEPEHGSRDSLEPSSMEASPEMHP PTRLSPQQAFPRTGGSGLSRKDSLTKAQLYGTLLN hide sequence

RefSeq Acc Id:	NP_001104585 ⟸ NM_001111115
- Peptide Label:	isoform 1
- UniProtKB:	A6KBJ0 (UniProtKB/TrEMBL), A0A0G2K0E5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSDQSSQASAADMEKLSALQEQKGELRKRLSYTTHKLEKLETEFDSTRHYLEIELRRAQEELD KVTEKLRRIQSNYMALQRINQELEDKLYRMGQHYEEEKRAMSHEIVALNSHLLEAKVTIDKLSE DNELYRKDCNLAAQLLQCSQTYGRVHKVSELPSDFQQRVSLHMEKHGCSLPSPLCHPSYADSVP TCVIAKVLEKPDPGSLSSRMSDASARDLAYRDGVENPGPRPPYKGDIYCSDTALYCPDERDHDR RPSVDTPVTDVGFLRAQNSTDSLAEEEEAEAAAFPEAYRREAFQGYAASLPTSSSYSSFSATSE EKEHAQASTLTASQQAIYLNSREELFSRKPPSATYGSSPRYAKAAATLGSPLEAQVAPGFARTV SPYPAEPYRYPASQQALMPPNLWSLRAKPSGNRLAAREDIRGQWRPLSVEDVGAYSYQAGAAGR AASPCNFSERFYGGGGGGGSPGKNAEGRASPLYASYKADSFSEGDDLSQGHLAEPCFLRAGGDL SLSPSRSADPLPGYATSDGDGDRLGVQLCGPGSSPEPEHGSRDSLEPSSMEASPEMHPPTRLSP QQAFPRTGGSGLSRKDSLTKAQLYGTLLN hide sequence

RefSeq Acc Id:	XP_017449875 ⟸ XM_017594386
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2K0E5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEKLRLHSPWVPLCLGQPRVLQGRLARSLPSLWDSALQEQKGELRKRLSYTTHKLEKLETEFDS TRHYLEIELRRAQEELDKVTEKLRRIQSNYMALQRINQELEDKLYRMGQHYEEEKRAMSHEIVA LNSHLLEAKVTIDKLSEDNELYRKDCNLAAQLLQCSQTYGRVHKVSELPSDFQQRVSLHMEKHG CSLPSPLCHPSYADSVPTCVIAKVLEKPDPGSLSSRMSDASARDLAYRDGVENPGPRPPYKGDI YCSDTALYCPDERDHDRRPSVDTPVTDVGFLRAQNSTDSLAEEEEAEAAAFPEAYRREAFQGYA ASLPTSSSYSSFSATSEEKEHAQASTLTASQQAIYLNSREELFSRKPPSATYGSSPRYAKAAAT LGSPLEAQVAPGFARTVSPYPAEPYRYPASQQALMPPNLWSLRAKPSGNRLAAREDIRGQWRPL SVEDVGAYSYQAGAAGRAASPCNFSERFYGGGGGGGSPGKNAEGRASPLYASYKADSFSEGDDL SQGHLAEPCFLRAGGDLSLSPSRSADPLPGYATSDGDGDRLGVQLCGPGSSPEPEHGSRDSLEP SSMEASPEMHPPTRLSPQQAFPRTGGSGLSRKDSLTKAQLYGTLLN hide sequence

Ensembl Acc Id:

ENSRNOP00000071412 ⟸ ENSRNOT00000082216

Ensembl Acc Id:

ENSRNOP00000049699 ⟸ ENSRNOT00000041903

RefSeq Acc Id:	XP_038968913 ⟸ XM_039112985
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2K0E5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968909 ⟸ XM_039112981
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K0E5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968916 ⟸ XM_039112988
- Peptide Label:	isoform X8
- UniProtKB:	A0A0G2K0E5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968915 ⟸ XM_039112987
- Peptide Label:	isoform X6
- UniProtKB:	A0A0G2K0E5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968912 ⟸ XM_039112984
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2K0E5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968914 ⟸ XM_039112986
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2K0E5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968918 ⟸ XM_039112990
- Peptide Label:	isoform X1
- UniProtKB:	A6KBJ1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000086294 ⟸ ENSRNOT00000117298

Ensembl Acc Id:

ENSRNOP00000088091 ⟸ ENSRNOT00000095766

RefSeq Acc Id:	XP_063118614 ⟸ XM_063262544
- Peptide Label:	isoform X12
- UniProtKB:	A0A0G2K0E5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118615 ⟸ XM_063262545
- Peptide Label:	isoform X1
- UniProtKB:	A6KBJ1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118612 ⟸ XM_063262542
- Peptide Label:	isoform X10
- UniProtKB:	A0A0G2K0E5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118613 ⟸ XM_063262543
- Peptide Label:	isoform X11
- UniProtKB:	A0A0G2K0E5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118610 ⟸ XM_063262540
- Peptide Label:	isoform X8
- UniProtKB:	A0A0G2K0E5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118609 ⟸ XM_063262539
- Peptide Label:	isoform X1
- UniProtKB:	A6KBJ1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118611 ⟸ XM_063262541
- Peptide Label:	isoform X9
- UniProtKB:	A6KBJ1 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O88881-F1-model_v2	AlphaFold	O88881	1-611	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708347	AgrOrtholog
BioCyc Gene	G2FUF-36270	BioCyc
Ensembl Genes	ENSRNOG00000004650	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000041903	ENTREZGENE
	ENSRNOT00000041903.6	UniProtKB/Swiss-Prot
	ENSRNOT00000082216	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000082216.2	UniProtKB/Swiss-Prot
	ENSRNOT00000095766.1	UniProtKB/TrEMBL
	ENSRNOT00000117298.1	UniProtKB/TrEMBL
	ENSRNOT00000140322	ENTREZGENE
	ENSRNOT00000152282	ENTREZGENE
	ENSRNOT00000158669	ENTREZGENE
	ENSRNOT00000161251	ENTREZGENE
	ENSRNOT00000168582	ENTREZGENE
InterPro	Tjap1/BEGAIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:79146	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	79146	ENTREZGENE
PANTHER	PTHR28664	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR28664:SF2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Begain	PhenoGen
RatGTEx	ENSRNOG00000004650	RatGTEx
UniProt	A0A0G2K0E5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AA22_RAT	UniProtKB/TrEMBL
	A0A8I6GDW4_RAT	UniProtKB/TrEMBL
	A6KBI8_RAT	UniProtKB/TrEMBL
	A6KBI9	ENTREZGENE, UniProtKB/TrEMBL
	A6KBJ0	ENTREZGENE, UniProtKB/TrEMBL
	A6KBJ1	ENTREZGENE, UniProtKB/TrEMBL
	A6KBJ2_RAT	UniProtKB/TrEMBL
	BEGIN_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	O88882	ENTREZGENE
UniProt Secondary	O88882	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-12-14	Begain	brain-enriched guanylate kinase-associated			Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD